FC878520

Overview
NameFC878520
Unique NameFC878520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878520 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 506.523 bits (1303), Expect = 1.597e-147
Identity = 235/257 (91.44%), Postives = 245/257 (95.33%), Query Frame = 1
Query:   40 MATPSTKPTPLLKHELDIVIPTIRNLDFLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPLFFNTLYDPYREGADFVRGYPFSLREGVHTAVSHGLWLNIPDYDAPTQLVKPRE*NTRYVDAVLTVPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCMKVICDHMGMG 810
            MA  S  PTPLLK ELDIVIPTIRNLDFLEMWRPFF+PYHLIIVQDGDPSK I VP+GFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYI+TIDDDCFVAKDPSGK+INALEQHIKNLL PSTP FFNTLYDPYREGADFVRGYPFS+REG  TAVSHGLWLNIPDYDAPTQLVKPRE NTRYVDAV+T+PKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWC+KVICDH+G+G
Sbjct:    1 MAGSSVTPTPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIINVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYREGADFVRGYPFSMREGAATAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGLG 257          

HSP 2 Score: 38.5058 bits (88), Expect = 1.597e-147
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:  801 GNGV*KTGLPYIWHSKASNP 860
            G GV KTGLPYIWHSKASNP
Sbjct:  255 GLGV-KTGLPYIWHSKASNP 273          
BLAST of FC878520 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 503.827 bits (1296), Expect = 1.344e-146
Identity = 232/253 (91.70%), Postives = 244/253 (96.44%), Query Frame = 1
Query:   52 STKPTPLLKHELDIVIPTIRNLDFLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPLFFNTLYDPYREGADFVRGYPFSLREGVHTAVSHGLWLNIPDYDAPTQLVKPRE*NTRYVDAVLTVPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCMKVICDHMGMG 810
            ST  TPLLK ELDIVIPTIRNLDFLEMWR FF+PYHLIIVQDGDP+KTIKVP+GFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYI+TIDDDCFVAKDPSGK+INALEQHIKNLLSPSTP FFNTLYDPYREGADFVRGYPFSLREG HTAVSHGLWLNIPDYDAPTQLVKP+E N RYVDAV+T+PKGTLFPMCGMNLAFDR+LIGPAMYFGLMGDGQPIGRYDDMWAGWC+KVICDH+ +G
Sbjct:   11 STPSTPLLKDELDIVIPTIRNLDFLEMWRAFFQPYHLIIVQDGDPTKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAHTAVSHGLWLNIPDYDAPTQLVKPKERNERYVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICDHLSLG 263          

HSP 2 Score: 38.1206 bits (87), Expect = 1.344e-146
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3
Query:  816 KTGLPYIWHSKASNP 860
            KTGLPYIWHSKASNP
Sbjct:  265 KTGLPYIWHSKASNP 279          
BLAST of FC878520 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 499.59 bits (1285), Expect = 1.476e-145
Identity = 232/251 (92.43%), Postives = 241/251 (96.02%), Query Frame = 1
Query:   58 KPTPLLKHELDIVIPTIRNLDFLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPLFFNTLYDPYREGADFVRGYPFSLREGVHTAVSHGLWLNIPDYDAPTQLVKPRE*NTRYVDAVLTVPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCMKVICDHMGMG 810
            KPTPLLK ELDIVIPTIRNLDFLEMWRPFFE YHLIIVQDGDPSK IKVP+GFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYI+TIDDDCFVAKDP+G EINALEQHIKNLLSPSTP FFNTLYDPYREG DFVRGYPFSLREGV TAVSHGLWLNIPDYDAPTQLVKP E NTR+VDAVLT+PKG+LFPMCGMNLAF+RELIGPAMYFGLMGDGQPIGRYDDMWAGWC+KVICDH+G G
Sbjct:    6 KPTPLLKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKVIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGHEINALEQHIKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPHERNTRFVDAVLTIPKGSLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGYG 256          

HSP 2 Score: 38.891 bits (89), Expect = 1.476e-145
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:  801 GNGV*KTGLPYIWHSKASNP 860
            G GV KTGLPYIWHSKASNP
Sbjct:  254 GYGV-KTGLPYIWHSKASNP 272          
BLAST of FC878520 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 497.278 bits (1279), Expect = 1.242e-144
Identity = 229/249 (91.97%), Postives = 240/249 (96.39%), Query Frame = 1
Query:   64 TPLLKHELDIVIPTIRNLDFLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPLFFNTLYDPYREGADFVRGYPFSLREGVHTAVSHGLWLNIPDYDAPTQLVKPRE*NTRYVDAVLTVPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCMKVICDHMGMG 810
            TPLLK ELDIVIPTIRNLDFLEMWRPFF+PYHLIIVQDGDPSK IKVP+GFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYI+TIDDDCFVAKDPSGK+INALEQHIKNLL PSTP FFNTLYDPYR+GADFVRGYPFS+REG  TAVSHGLWLNIPDYDAPTQLVKP E NTRYVDAV+T+PKGTLFPMCGMNLAFDR+LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICDH+G+G
Sbjct:    5 TPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYRDGADFVRGYPFSMREGAPTAVSHGLWLNIPDYDAPTQLVKPHERNTRYVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLGLG 253          

HSP 2 Score: 38.1206 bits (87), Expect = 1.242e-144
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3
Query:  816 KTGLPYIWHSKASNP 860
            KTGLPYIWHSKASNP
Sbjct:  255 KTGLPYIWHSKASNP 269          
The following BLAST results are available for this feature:
BLAST of FC878520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UPTG2_SOLTU1.597e-14791.44Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
UPTG_MAIZE1.344e-14691.70Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG_PEA1.476e-14592.43Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG1_SOLTU1.242e-14491.97Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ5YP17RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YP17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878520 ID=FC878520; Name=FC878520; organism=Citrus clementina; type=EST; length=860bp
CCGGAAGTCTCTCTCTCATTTTGTCTCAAATTTTTGAAGATGGCAACTCC
TTCAACAAAGCCAACGCCACTGCTGAAACACGAGCTGGATATCGTGATAC
CGACGATTCGAAACTTGGATTTCTTGGAGATGTGGAGGCCATTTTTTGAG
CCGTATCATTTGATCATCGTACAAGATGGTGACCCATCAAAGACCATCAA
GGTCCCTGACGGCTTTGACTACGAGCTCTACAACAGAAACGACATCAACC
GCATTCTGGGTCCTAAGGCTTCTTGCATTTCCTTCAAGGACTCTGCTTGT
CGATGCTTTGGCTACATGGTCTCTAAGAAGAAATATATTTTCACCATTGA
TGATGATTGCTTTGTTGCCAAAGATCCCTCTGGCAAAGAGATCAATGCAC
TCGAGCAGCACATAAAGAACCTGTTGTCACCATCCACTCCATTATTCTTC
AACACCCTTTATGATCCATACAGGGAAGGTGCGGACTTTGTCCGTGGATA
CCCTTTCAGTCTCCGTGAAGGTGTCCACACGGCTGTATCTCATGGCCTCT
GGCTGAACATCCCTGACTATGATGCACCCACTCAGCTGGTCAAGCCTCGT
GAGTGAAACACCAGGTATGTGGACGCTGTTCTGACGGTTCCTAAGGGAAC
CCTGTTCCCAATGTGCGGTATGAATCTGGCATTCGACCGTGAGCTGATTG
GACCGGCAATGTACTTTGGACTCATGGGTGATGGACAGCCAATAGGACGT
TATGATGATATGTGGGCTGGCTGGTGCATGAAGGTAATATGTGATCATAT
GGGAATGGGGTGTGAAAAACCGGTCTGCCTTACATATGGCACAGCAAAGC
TAGCAACCCA
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