FC878523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878523 vs. ExPASy Swiss-Prot
Match: YORF_SCHPO (Uncharacterized RING finger protein P8B7.15c OS=Schizosaccharomyces pombe GN=SPBP8B7.15c PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 6.042e-28 Identity = 82/245 (33.47%), Postives = 117/245 (47.76%), Query Frame = 2 Query: 107 VYYKFKSARDYDSIPMDGPF-ISVGTLKEKIFESKHLGRGKDFDLLVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMPIVTEQEPKVDAVVEDTQPEKSGFHGVDSSAMNTLDSEWDEFGNDLYAIPEAPPVQSSNPLLDVAPTNKADEDSKIKALIDTPALDWQRQGPDSFAPXXXXXXXXXXXXXXXXXXLERXTPPQGYVCHRCKVPGHFIQHCPTNGDPKYDVK-RFKHPTGIPKSML 835 +YYKFKS +D I DG +SV +K +I K LG G DFDLL+ NA +NEEY D+ +IP++TSV++RRVP + + K S A T + D + + + P+ S ++ +P++ ED+ I+ + + W R+ D A + PP GY+C+RC GH+IQ CPTN DP YD K R K TGIP+S L Sbjct: 5 IYYKFKSQKDPSRITFDGTIGMSVFDVKREIIMQKKLGNGLDFDLLLYNANSNEEYDDDTFIIPRSTSVIVRRVPAQ--------------------KSGKGTAARYVSGAPKTTGARSDSVKRPVPMLQKKAPITSGESNINKSPSSS--EDAAIQQMFQVSSDQW-RETQDKMASATPIYKPNQRRIAAS---VPDKPPPPGYICYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFL 223
BLAST of FC878523 vs. ExPASy Swiss-Prot
Match: RBBP6_HUMAN (Retinoblastoma-binding protein 6 OS=Homo sapiens GN=RBBP6 PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.179e-23 Identity = 76/245 (31.02%), Postives = 118/245 (48.16%), Query Frame = 2 Query: 107 VYYKFKSARDYDSIPMDGPFISVGTLKEKIFESKHLGRGKDFDLLVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMPIVTEQEPKVDAVVEDTQPEKSGFHGVDSSAMNTLDSEWDEFGNDLYAIPEAPPVQSSNPLLDVAPTNKADEDSKIKALIDTPALDWQRQGPDSFAPXXXXXXXXXXXXXXXXXXLERXTPPQGYVCHRCKVPGHFIQHCPTNGDPKYDV-KRFKHPTGIPKSMLI 838 V+YKF S +YD++ DG IS+ LK++I + L + D DL +TNAQT EEY D+ LIPKN+SV++RR+ PI + V+ T+P + +D S+ + ++ + N +A N ++ED KIKA++ ++ P ++ PP Y C RC PGH+I++CPTNGD ++ R K TGIP+S ++ Sbjct: 4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKEEYTDDNALIPKNSSVIVRRI------PIGGVKSTSKTYVISRTEPAMATTKAIDDSSASISLAQLTKTAN-------------------LAEANASEED-KIKAMMSQSGHEYD---PINYMKKPL------------------GPPPPSYTCFRCGKPGHYIKNCPTNGDKNFESGPRIKKSTGIPRSFMM 200
BLAST of FC878523 vs. ExPASy Swiss-Prot
Match: RBBP6_MOUSE (Retinoblastoma-binding protein 6 OS=Mus musculus GN=Rbbp6 PE=1 SV=5) HSP 1 Score: 108.612 bits (270), Expect = 4.480e-23 Identity = 75/245 (30.61%), Postives = 117/245 (47.76%), Query Frame = 2 Query: 107 VYYKFKSARDYDSIPMDGPFISVGTLKEKIFESKHLGRGKDFDLLVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMPIVTEQEPKVDAVVEDTQPEKSGFHGVDSSAMNTLDSEWDEFGNDLYAIPEAPPVQSSNPLLDVAPTNKADEDSKIKALIDTPALDWQRQGPDSFAPXXXXXXXXXXXXXXXXXXLERXTPPQGYVCHRCKVPGHFIQHCPTNGDPKYDV-KRFKHPTGIPKSMLI 838 V+YKF S +YD++ DG IS+ LK++I + L + D DL +TNAQT EEY D+ LIPKN+SV++RR+ PI + V+ T+P +D ++ + ++ + N +A N ++ED KIKA++ ++ P ++ PP Y C RC PGH+I++CPTNGD ++ R K TGIP+S ++ Sbjct: 4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADSDLQITNAQTKEEYTDDNALIPKNSSVIVRRI------PIGGVKSTSKTYVISRTEPVMGTTKAIDDASASISLAQLTKTAN-------------------LAEANASEED-KIKAMMSQSGHEYD---PINYMKKTLV-----------------GPPPPSYTCFRCGKPGHYIKNCPTNGDKNFESGPRIKKSTGIPRSFMM 201
BLAST of FC878523 vs. ExPASy Swiss-Prot
Match: MPE1_YEAST (Protein MPE1 OS=Saccharomyces cerevisiae GN=MPE1 PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.954e-22 Identity = 67/245 (27.35%), Postives = 105/245 (42.86%), Query Frame = 2 Query: 107 VYYKFKSARDYDSIPMDGPFISVGTLKEKIFESKHLGRGKDFDLLVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMPIVTEQEPKVDAVVEDTQPEKSGFHGVDSSAMNTLDSEWDEFGNDLYAIPEAPPV--QSSNPLLDVAPTNKADEDSKIKALIDTPALDWQRQGPDSFAPXXXXXXXXXXXXXXXXXXLERXTPPQGYVCHRCKVPGHFIQHCPTNGDPKYDVKRFKHPTGIPKSML 835 ++Y+FKS R+ I DG ++V LK +I + LG G DF L + N T EEY D+A +IP++TSV+++R P + + + V A GN + P V + + A + E+ +I ++ T W++ + A PP GY+C+RC H+I++CPTN DP ++ KR + TGIPK L Sbjct: 5 IFYRFKSQRNTSRILFDGTGLTVFDLKREIIQENKLGDGTDFQLKIYNPDTEEEYDDDAFVIPRSTSVIVKRSPAIKSFSVHSRLKGNVGAAA---------------------------LGNATRYVTGRPRVLQKRQHTATTTANVSGTTEEERIASMFATQENQWEQTQEEMSAATPVFFKSQTNKNSAQE---NEGPPPPGYMCYRCGGRDHWIKNCPTNSDPNFEGKRIRRTTGIPKKFL 219 The following BLAST results are available for this feature:
BLAST of FC878523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878523 ID=FC878523; Name=FC878523; organism=Citrus clementina; type=EST; length=838bpback to top |