FC878523

Overview
NameFC878523
Unique NameFC878523
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length838
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878523 vs. ExPASy Swiss-Prot
Match: YORF_SCHPO (Uncharacterized RING finger protein P8B7.15c OS=Schizosaccharomyces pombe GN=SPBP8B7.15c PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.042e-28
Identity = 82/245 (33.47%), Postives = 117/245 (47.76%), Query Frame = 2
Query:  107 VYYKFKSARDYDSIPMDGPF-ISVGTLKEKIFESKHLGRGKDFDLLVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMPIVTEQEPKVDAVVEDTQPEKSGFHGVDSSAMNTLDSEWDEFGNDLYAIPEAPPVQSSNPLLDVAPTNKADEDSKIKALIDTPALDWQRQGPDSFAPXXXXXXXXXXXXXXXXXXLERXTPPQGYVCHRCKVPGHFIQHCPTNGDPKYDVK-RFKHPTGIPKSML 835
            +YYKFKS +D   I  DG   +SV  +K +I   K LG G DFDLL+ NA +NEEY D+  +IP++TSV++RRVP +                    +  K       S A  T  +  D     +  + +  P+ S    ++ +P++   ED+ I+ +    +  W R+  D  A                   +    PP GY+C+RC   GH+IQ CPTN DP YD K R K  TGIP+S L
Sbjct:    5 IYYKFKSQKDPSRITFDGTIGMSVFDVKREIIMQKKLGNGLDFDLLLYNANSNEEYDDDTFIIPRSTSVIVRRVPAQ--------------------KSGKGTAARYVSGAPKTTGARSDSVKRPVPMLQKKAPITSGESNINKSPSSS--EDAAIQQMFQVSSDQW-RETQDKMASATPIYKPNQRRIAAS---VPDKPPPPGYICYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFL 223          
BLAST of FC878523 vs. ExPASy Swiss-Prot
Match: RBBP6_HUMAN (Retinoblastoma-binding protein 6 OS=Homo sapiens GN=RBBP6 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.179e-23
Identity = 76/245 (31.02%), Postives = 118/245 (48.16%), Query Frame = 2
Query:  107 VYYKFKSARDYDSIPMDGPFISVGTLKEKIFESKHLGRGKDFDLLVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMPIVTEQEPKVDAVVEDTQPEKSGFHGVDSSAMNTLDSEWDEFGNDLYAIPEAPPVQSSNPLLDVAPTNKADEDSKIKALIDTPALDWQRQGPDSFAPXXXXXXXXXXXXXXXXXXLERXTPPQGYVCHRCKVPGHFIQHCPTNGDPKYDV-KRFKHPTGIPKSMLI 838
            V+YKF S  +YD++  DG  IS+  LK++I   + L +  D DL +TNAQT EEY D+  LIPKN+SV++RR+      PI   +      V+  T+P  +    +D S+ +   ++  +  N                   +A  N ++ED KIKA++     ++    P ++                         PP  Y C RC  PGH+I++CPTNGD  ++   R K  TGIP+S ++
Sbjct:    4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKEEYTDDNALIPKNSSVIVRRI------PIGGVKSTSKTYVISRTEPAMATTKAIDDSSASISLAQLTKTAN-------------------LAEANASEED-KIKAMMSQSGHEYD---PINYMKKPL------------------GPPPPSYTCFRCGKPGHYIKNCPTNGDKNFESGPRIKKSTGIPRSFMM 200          
BLAST of FC878523 vs. ExPASy Swiss-Prot
Match: RBBP6_MOUSE (Retinoblastoma-binding protein 6 OS=Mus musculus GN=Rbbp6 PE=1 SV=5)

HSP 1 Score: 108.612 bits (270), Expect = 4.480e-23
Identity = 75/245 (30.61%), Postives = 117/245 (47.76%), Query Frame = 2
Query:  107 VYYKFKSARDYDSIPMDGPFISVGTLKEKIFESKHLGRGKDFDLLVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMPIVTEQEPKVDAVVEDTQPEKSGFHGVDSSAMNTLDSEWDEFGNDLYAIPEAPPVQSSNPLLDVAPTNKADEDSKIKALIDTPALDWQRQGPDSFAPXXXXXXXXXXXXXXXXXXLERXTPPQGYVCHRCKVPGHFIQHCPTNGDPKYDV-KRFKHPTGIPKSMLI 838
            V+YKF S  +YD++  DG  IS+  LK++I   + L +  D DL +TNAQT EEY D+  LIPKN+SV++RR+      PI   +      V+  T+P       +D ++ +   ++  +  N                   +A  N ++ED KIKA++     ++    P ++                         PP  Y C RC  PGH+I++CPTNGD  ++   R K  TGIP+S ++
Sbjct:    4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADSDLQITNAQTKEEYTDDNALIPKNSSVIVRRI------PIGGVKSTSKTYVISRTEPVMGTTKAIDDASASISLAQLTKTAN-------------------LAEANASEED-KIKAMMSQSGHEYD---PINYMKKTLV-----------------GPPPPSYTCFRCGKPGHYIKNCPTNGDKNFESGPRIKKSTGIPRSFMM 201          
BLAST of FC878523 vs. ExPASy Swiss-Prot
Match: MPE1_YEAST (Protein MPE1 OS=Saccharomyces cerevisiae GN=MPE1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.954e-22
Identity = 67/245 (27.35%), Postives = 105/245 (42.86%), Query Frame = 2
Query:  107 VYYKFKSARDYDSIPMDGPFISVGTLKEKIFESKHLGRGKDFDLLVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMPIVTEQEPKVDAVVEDTQPEKSGFHGVDSSAMNTLDSEWDEFGNDLYAIPEAPPV--QSSNPLLDVAPTNKADEDSKIKALIDTPALDWQRQGPDSFAPXXXXXXXXXXXXXXXXXXLERXTPPQGYVCHRCKVPGHFIQHCPTNGDPKYDVKRFKHPTGIPKSML 835
            ++Y+FKS R+   I  DG  ++V  LK +I +   LG G DF L + N  T EEY D+A +IP++TSV+++R P      + +  +  V A                              GN    +   P V  +  +     A  +   E+ +I ++  T    W++   +  A                        PP GY+C+RC    H+I++CPTN DP ++ KR +  TGIPK  L
Sbjct:    5 IFYRFKSQRNTSRILFDGTGLTVFDLKREIIQENKLGDGTDFQLKIYNPDTEEEYDDDAFVIPRSTSVIVKRSPAIKSFSVHSRLKGNVGAAA---------------------------LGNATRYVTGRPRVLQKRQHTATTTANVSGTTEEERIASMFATQENQWEQTQEEMSAATPVFFKSQTNKNSAQE---NEGPPPPGYMCYRCGGRDHWIKNCPTNSDPNFEGKRIRRTTGIPKKFL 219          
The following BLAST results are available for this feature:
BLAST of FC878523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YORF_SCHPO6.042e-2833.47Uncharacterized RING finger protein P8B7.15c OS=Sc... [more]
RBBP6_HUMAN1.179e-2331.02Retinoblastoma-binding protein 6 OS=Homo sapiens G... [more]
RBBP6_MOUSE4.480e-2330.61Retinoblastoma-binding protein 6 OS=Mus musculus G... [more]
MPE1_YEAST4.954e-2227.35Protein MPE1 OS=Saccharomyces cerevisiae GN=MPE1 P... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ5YP18RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YP18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878523 ID=FC878523; Name=FC878523; organism=Citrus clementina; type=EST; length=838bp
CTTCGATTATCATCGCTTCATTATTTTGTGATCTTCTCTTTGATATATTC
TATTATTCCATACTTTTTTTATTCATCAATCAGAAAAAAAAAACAAAGGA
ATGGCTGTGTATTACAAGTTTAAGAGTGCAAGAGACTATGATTCTATCCC
AATGGATGGTCCGTTTATATCAGTTGGTACTTTGAAAGAAAAAATTTTTG
AATCAAAGCATTTAGGCAGGGGTAAGGACTTCGACCTCCTGGTCACTAAT
GCCCAAACTAATGAAGAGTACCTTGATGAGGCAATGTTAATTCCCAAAAA
TACATCTGTGTTAATTCGTCGGGTTCCTGGACGGCCTCGCATGCCTATTG
TAACTGAGCAAGAGCCTAAGGTGGACGCTGTGGTGGAGGACACACAACCT
GAAAAGAGTGGCTTCCACGGTGTTGATTCTTCTGCCATGAATACTTTGGA
CTCTGAGTGGGATGAATTTGGCAATGATTTATATGCAATTCCTGAGGCAC
CACCTGTTCAATCAAGCAACCCACTTCTGGATGTTGCTCCAACAAATAAA
GCTGACGAGGACAGCAAAATTAAGGCTTTAATTGATACTCCAGCCTTGGA
CTGGCAGCGGCAAGGTCCTGACAGCTTTGCCCCTGGTAGAGGATTTGGCA
GGGGGATGGGCGGAAGGATGGGCGGACGTGGTTTCGGTTTGGAGCGTANA
ACACCTCCACAAGGCTATGTATGTCACAGGTGTAAAGTTCCTGGACATTT
TATTCAACACTGCCCTACAAATGGTGACCCAAAATATGATGTTAAAAGAT
TTAAACATCCAACTGGAATTCCGAAGTCGATGCTCATT
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