FC878526

Overview
NameFC878526
Unique NameFC878526
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length868
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 9.667e-53
Identity = 130/225 (57.78%), Postives = 140/225 (62.22%), Query Frame = 3
Query:  198 MGFDDGCNTGLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASD--EDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            MGFDD CNTGLVLGLG        P+   NN N    Q          EPSL+L L G+               S+ V  G ++           L RQ S HS VS SFSSGRVVKRERD                SD  EDE+G++ARKKLRLTK+QSALLEESFK HSTLNPKQKQ LARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETL DE
Sbjct:    1 MGFDDTCNTGLVLGLG--------PSPIPNNYNSTIRQSSVYK----LEPSLTLCLSGD--------------PSVTVVTGADQ-----------LCRQTSSHSGVS-SFSSGRVVKRERDGGEESPEEEEMTERVISDYHEDEEGISARKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLADE 187          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.823e-51
Identity = 128/235 (54.47%), Postives = 149/235 (63.40%), Query Frame = 3
Query:  198 MGFDDGCNTGLVLGLGFASAIETTPTNKANNI----NIVNHQQLQLPKGTCFEPSLSLGLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXX------RASDE--DEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            MG DD CNTGLVLGLG    +  TP N  + I    + V+H+ ++L      +PSL+L L GE                      Y+    AG  +   + RQ S HS +S SFSSGRV KRER++                   R SD+  DE+GV+ARKKLRLTK+QSALLE++FK HSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE
Sbjct:    1 MGLDDSCNTGLVLGLG----LSPTPNNYNHAIKKSSSTVDHRFIRL------DPSLTLSLSGE---------------------SYKIKTGAGAGDQ--ICRQTSSHSGIS-SFSSGRV-KREREISGGDGEEEAEETTERVVCSRVSDDHDDEEGVSARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 200          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.957e-37
Identity = 97/214 (45.33%), Postives = 131/214 (61.21%), Query Frame = 3
Query:  225 GLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            GL LGL F        +N + ++   +     L + + +  S +  +P     +++   T+     IDVN+    +A  G  +  +    +SP+S VS+S  +G+  +RE D              R   +DEDG N+RKKLRL+K+QSA+LEE+FK HSTLNPKQKQALA+QL LR RQVEVWFQNRRARTKLKQTEVDCEFL++CCE LT+E
Sbjct:    9 GLSLGLNFPKKQINLKSNPSVSVT-PSSSSFGLFRRSSWNESFTSSVPNS---DSSQKETRTFIRGIDVNRP-PSTAEYGDEDAGV----SSPNSTVSSS--TGKRSEREEDTDPQGS--------RGISDDEDGDNSRKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEE 203          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.556e-37
Identity = 104/235 (44.26%), Postives = 128/235 (54.47%), Query Frame = 3
Query:  210 DGCNTGLVLGLGF---ASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEI--YPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSG-----------RVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            DG    LVLGLG    A         +    ++V   +         EPS+ L L   +  +  + T  ++  +   DVN+    +A A   E       A+P  + S + S G           R                     RASD+DE G +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCETLT+E
Sbjct:   15 DGGRLELVLGLGVGVGAGVRRGEEEERGRREDVVGAGRWAAMAAASPEPSVRLSLVSSLGLHWPSETGRSEAAARGFDVNRAPSVAAGAPGMEDDEEGPGAAPALSSSPNDSGGSFPLDLSGQGLRGHAEAAAQGGGGGGGGERSSSRASDDDE-GASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEE 248          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.556e-37
Identity = 104/235 (44.26%), Postives = 128/235 (54.47%), Query Frame = 3
Query:  210 DGCNTGLVLGLGF---ASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEI--YPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSG-----------RVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            DG    LVLGLG    A         +    ++V   +         EPS+ L L   +  +  + T  ++  +   DVN+    +A A   E       A+P  + S + S G           R                     RASD+DE G +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCETLT+E
Sbjct:   15 DGGRLELVLGLGVGVGAGVRRGEEEERGRREDVVGAGRWAAMAAASPEPSVRLSLVSSLGLHWPSETGRSEAAARGFDVNRAPSVAAGAPGMEDDEEGPGAAPALSSSPNDSGGSFPLDLSGHGLRGHAEAAAQGGGGGGGGERSSSRASDDDE-GASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEE 248          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSJ (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. japonica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.556e-37
Identity = 101/222 (45.50%), Postives = 120/222 (54.05%), Query Frame = 3
Query:  207 DDGCNTGLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTC--FEPSLSLGLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            D G   GL LG G     +    ++          +   P   C   EPSL+L LP +    AA   T   S                          A   S++S   ++   VKRER               R  D+D+DG + RKKLRLTKEQSALLE+ F++HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLK+CCETLT+E
Sbjct:   11 DAGLALGLSLGGGGGGTTDAAAAHRGGC-------RRPSPSSQCPPLEPSLTLSLPDDAAAGAAATATATASGG---------------------GGPAHSVSSLSVGAAAAAAVKRERAEEADGERVSSTAAGR--DDDDDG-STRKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEE 201          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSI (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. indica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.556e-37
Identity = 101/222 (45.50%), Postives = 120/222 (54.05%), Query Frame = 3
Query:  207 DDGCNTGLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTC--FEPSLSLGLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            D G   GL LG G     +    ++          +   P   C   EPSL+L LP +    AA   T   S                          A   S++S   ++   VKRER               R  D+D+DG + RKKLRLTKEQSALLE+ F++HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLK+CCETLT+E
Sbjct:   11 DAGLALGLSLGGGGGGTTDAAAAHRGGC-------RRPSPSSQCPPLEPSLTLSLPDDAAAGAAATATATASGG---------------------GGPAHSVSSLSVGAAAAAAVKRERAEEADGERVSSTAAGR--DDDDDG-STRKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEE 201          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.556e-37
Identity = 77/88 (87.50%), Postives = 84/88 (95.45%), Query Frame = 3
Query:  603 RASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            RASDED DG +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCETLT+E
Sbjct:  165 RASDED-DGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEE 251          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.556e-37
Identity = 77/88 (87.50%), Postives = 84/88 (95.45%), Query Frame = 3
Query:  603 RASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            RASDED DG +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCETLT+E
Sbjct:   78 RASDED-DGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEE 164          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSJ (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. japonica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.295e-36
Identity = 71/87 (81.61%), Postives = 82/87 (94.25%), Query Frame = 3
Query:  606 ASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            A+ +D++G N+RKKLRL+KEQSALLE+ FK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE LK+CCETLT+E
Sbjct:   82 AAADDDEGCNSRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEE 168          
The following BLAST results are available for this feature:
BLAST of FC878526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
HAT9_ARATH9.667e-5357.78Homeobox-leucine zipper protein HAT9 OS=Arabidopsi... [more]
HAT22_ARATH1.823e-5154.47Homeobox-leucine zipper protein HAT22 OS=Arabidops... [more]
HAT4_ARATH1.957e-3745.33Homeobox-leucine zipper protein HAT4 OS=Arabidopsi... [more]
HOX27_ORYSJ2.556e-3744.26Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX27_ORYSI2.556e-3744.26Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX19_ORYSJ2.556e-3745.50Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX19_ORYSI2.556e-3745.50Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX11_ORYSJ2.556e-3787.50Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX11_ORYSI2.556e-3787.50Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX15_ORYSJ6.295e-3681.61Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YP19RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YP19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878526 ID=FC878526; Name=FC878526; organism=Citrus clementina; type=EST; length=868bp
CAAAAAGAAAAAAGAAAAAAAAAAACAAAAAACAAAAAAGTCTTACTCAT
TCTCTCTTCTTAATAAAGAGGCCCGTTTGCTCCCCCATTTCTCTCAAACT
AAACTCTCCAAATTTCCTCTCTTTTTTTCTTTATTTTTCTCTCCTTCGCT
TCAGAAGTCCCGAGTGTTTCTCAAGACTCTCGAATCTCATATCTTAAATG
GGTTTTGATGATGGGTGTAACACGGGCCTCGTGCTAGGGTTAGGTTTCGC
ATCAGCCATAGAAACTACTCCAACAAATAAGGCGAACAATATAAATATTG
TCAACCACCAGCAGCTGCAGCTGCCTAAGGGTACATGTTTTGAGCCATCG
CTTAGTCTGGGCCTTCCTGGTGAGATTTACCCTGAGGCTGCTACTGCTAC
TACCAAAAAGAATAGTAATAGTATTGATGTGAACAAAGGTTATGAGGAAT
CCGCAGCAGCAGGCGTCGCCGAATATCAAATACTAAATCGTCAGGCTTCT
CCTCACAGTGCTGTTTCTAATTCCTTCTCTAGCGGTAGAGTCGTCAAGAG
GGAGAGAGACCTTAGCAGTGAAGAGATAGAGGTTGAAAAAGTTATTTCCT
CAAGAGCCAGTGATGAAGATGAAGACGGTGTTAATGCCAGAAAGAAACTT
AGGCTCACCAAAGAACAATCTGCTCTTCTTGAGGAAAGCTTCAAACAGCA
TAGCACTCTCAATCCGAAGCAAAAGCAAGCTTTGGCAAGGCAACTAAACC
TACGGCCAAGACAAGTTGAAGTATGGTTCCAGAATAGGAGAGCCAGGACA
AAGCTCAAGCAAACAGAAGTGGACTGTGAATTCTTGAAGAAATGCTGTGA
AACACTAACTGATGAAAA
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