FC878527

Overview
NameFC878527
Unique NameFC878527
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878527 vs. ExPASy Swiss-Prot
Match: HA22I_ARATH (HVA22-like protein i OS=Arabidopsis thaliana GN=HVA22I PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.539e-31
Identity = 78/182 (42.86%), Postives = 104/182 (57.14%), Query Frame = 2
Query:    5 LTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYYWQNCAQLSQEKFFDIIKFLAGQSARFSNAPAHENQKRNGEKQHAPSAP---PLPENGFNSPRTPKPGKSKFGFGSPRSSTINRAVSEPTK--SNLAQVNMRVTSEPGS 535
            LTV ER  DA  SW PMY E KLAFFIYLW PKT+GT +VY+S  RPY+S+HE DID  +LELR R  D+A+ YWQ  A   Q +  +I++++A QS      P    QKR G    AP+ P   P+P++        +P +      S  SS+ N   +EPT+  S  ++    VTS P +
Sbjct:   50 LTVFERVGDAFVSWVPMYSEAKLAFFIYLWYPKTRGTTYVYESFFRPYLSQHENDIDHSLLELRTRAGDMAVIYWQRVASYGQTRILEILQYVAAQSTPRPQPP----QKRGGRANQAPAKPKKAPVPQS--------EPEEVSLSSSSSSSSSENEG-NEPTRKVSGPSRPRPTVTSVPAA 218          
BLAST of FC878527 vs. ExPASy Swiss-Prot
Match: HA22J_ARATH (HVA22-like protein j OS=Arabidopsis thaliana GN=HVA22J PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.441e-29
Identity = 61/138 (44.20%), Postives = 89/138 (64.49%), Query Frame = 2
Query:    2 MLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYYWQNCAQLSQEKFFDIIKFLAGQSARFSNAPAHENQKRNGEKQHAPSAPPLPENGFNSPRTPKP 415
            +++  ER  D   SW P+YGE+K+ FF+YLW PKT+GT  VY+++L+PY+++HET+IDR+I+ELRAR WD  I+Y+ N AQ  Q       +++  QS RFS A A++         +A S P   +N   SPR P+P
Sbjct:   49 LISSFERVGDFFISWLPLYGEMKVVFFVYLWYPKTKGTRHVYETLLKPYMAQHETEIDRKIMELRARAWDFFIFYFNNFAQAGQSTLIQGFQYVLAQSVRFSAAAANQPPTERNVNMNAQS-PVEMDNDPPSPRAPRP 185          
BLAST of FC878527 vs. ExPASy Swiss-Prot
Match: HA22H_ARATH (HVA22-like protein h OS=Arabidopsis thaliana GN=HVA22H PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 4.192e-29
Identity = 77/210 (36.67%), Postives = 110/210 (52.38%), Query Frame = 2
Query:    5 LTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYYWQNCAQLSQEKFFDIIKFLAGQSA--------RFSNAPAHENQKR---NGEKQHAPSAPPL------PENGFNSPRTPKPGKSKFGFGSPRSSTINRAVSEPTKSNLAQVNMRVTSEPGSPEDGYIPDSPTTPGTP 583
            LT+ ER  DA+ASW P+Y E KLAFFIYLW PKT+GT +VY S  +PYV+KHE +IDR ++ELR +  DLA+ Y +      Q +  +I+ F+A QS         + + AP  E QK+       Q A S P +      P+     P +PKP        SPR     +  ++  K++++Q  +   + PG P     P  P  P +P
Sbjct:   50 LTIFERVGDALASWVPLYCEAKLAFFIYLWFPKTRGTTYVYDSFFQPYVAKHENEIDRSLIELRTKAGDLAVIYCRKAVSYGQTRIVEILHFVALQSTPKPKPKEKKQAAAPEEEEQKQPDLKATSQAASSNPQVRLQSKKPQLVTKEPISPKP------LSSPRKQQQLQTETKEAKASVSQTKLTTLTPPGPP-----PPPPPPPPSP 248          
BLAST of FC878527 vs. ExPASy Swiss-Prot
Match: HA22G_ARATH (Putative HVA22-like protein g OS=Arabidopsis thaliana GN=HVA22G PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.648e-25
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 2
Query:    5 LTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYYWQNCAQLSQEKFFDIIKFLAGQSARFSNA 313
            LT+ ER  DA+ SW PMY E KLAFFIYLW PKT+GT +VY S  RPY++KHE +IDR +++++ R  D+A+ Y Q      Q KFF+I++++  QS   S A
Sbjct:   39 LTIFERIGDALVSWLPMYSEAKLAFFIYLWFPKTKGTTYVYDSFFRPYIAKHENEIDRNLVKVKTRAKDMAMIYLQKAINQGQTKFFEILQYITEQSTPKSKA 141          
BLAST of FC878527 vs. ExPASy Swiss-Prot
Match: REEP1_MOUSE (Receptor expression-enhancing protein 1 OS=Mus musculus GN=Reep1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.037e-11
Identity = 45/154 (29.22%), Postives = 74/154 (48.05%), Query Frame = 2
Query:    2 MLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYYWQNCAQLSQEKFFDIIKFLAGQSA---RFSNAPAHENQKRNGEKQHAPSAPPLPENGFNSPRTPKPGKSKFGFGSPRSS 454
            + T  E F D    WFP Y ELK+AF  +L SP T+G+  +Y+  + P +S  E +ID  +++ + R +D  +++ +    L+      ++    GQ A   R  +    +     G+   APS PP P  G +S +  +P  S+    S  SS
Sbjct:   47 LFTTAETFTDIFLCWFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVHFGKR--GLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGTGRSSGKHSQPKMSRSASESAGSS 198          
BLAST of FC878527 vs. ExPASy Swiss-Prot
Match: REEP1_HUMAN (Receptor expression-enhancing protein 1 OS=Homo sapiens GN=REEP1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.769e-11
Identity = 45/154 (29.22%), Postives = 74/154 (48.05%), Query Frame = 2
Query:    2 MLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYYWQNCAQLSQEKFFDIIKFLAGQSA---RFSNAPAHENQKRNGEKQHAPSAPPLPENGFNSPRTPKPGKSKFGFGSPRSS 454
            + T  E F D    WFP Y ELK+AF  +L SP T+G+  +Y+  + P +S  E +ID  +++ + R +D  +++ +    L+      ++    GQ A   R  +    +     G+   APS PP P +G  S +  +P  S+    S  SS
Sbjct:   47 LFTTAETFTDIFLCWFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVHFGKR--GLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASGKHGQPKMSRSASESASSS 198          
The following BLAST results are available for this feature:
BLAST of FC878527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
HA22I_ARATH1.539e-3142.86HVA22-like protein i OS=Arabidopsis thaliana GN=HV... [more]
HA22J_ARATH1.441e-2944.20HVA22-like protein j OS=Arabidopsis thaliana GN=HV... [more]
HA22H_ARATH4.192e-2936.67HVA22-like protein h OS=Arabidopsis thaliana GN=HV... [more]
HA22G_ARATH1.648e-2550.49Putative HVA22-like protein g OS=Arabidopsis thali... [more]
REEP1_MOUSE1.037e-1129.22Receptor expression-enhancing protein 1 OS=Mus mus... [more]
REEP1_HUMAN1.769e-1129.22Receptor expression-enhancing protein 1 OS=Homo sa... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA18DG07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878527 ID=FC878527; Name=FC878527; organism=Citrus clementina; type=EST; length=844bp
AATGTTGACAGTTCTTGAGAGGTTTCTTGATGCAATTGCTTCATGGTTTC
CGATGTATGGAGAGCTGAAGCTGGCATTTTTCATCTACTTGTGGTCTCCA
AAGACACAGGGAACTGGGTTTGTTTATCAAAGTGTGTTGAGGCCTTACGT
GTCGAAGCACGAAACAGACATTGATAGAAGGATTCTGGAATTGAGAGCAA
GACTGTGGGATCTGGCTATTTACTATTGGCAAAATTGCGCACAACTGAGT
CAAGAGAAATTCTTTGACATAATCAAGTTCTTGGCTGGCCAATCTGCTAG
GTTCTCTAACGCCCCTGCCCATGAGAATCAGAAACGCAACGGTGAGAAGC
AGCATGCACCGAGCGCGCCGCCGCTACCGGAAAACGGGTTTAACTCACCC
AGAACCCCAAAACCGGGCAAGTCCAAATTCGGATTCGGATCCCCGCGGTC
CAGCACAATCAACCGGGCCGTGTCGGAGCCGACGAAATCCAATCTCGCGC
AAGTCAACATGCGGGTCACATCGGAACCCGGTTCCCCCGAAGACGGTTAC
ATCCCAGACTCGCCCACCACGCCAGGCACGCCCAACGAAAGTCTCCTCCA
AGCTCGCCAAAGGCTCCGGCGTCAGAAACCACAGCACTAGAATTGGCGCC
AAAAAGATTGCACGTCAATTGCTCTGCTTGATCAATTGTACAGATGAAAA
AAGAAGGAAAAAAAAAACCCACAATTCTTTCTTTAATGATAAAAAATTAG
TTAATTTTTTTATTTAGTCAAAATTCTGTTTCTTTTACACGGAATACACT
GAGCATGCGACTGATTAATTGAAAACACGCGGAGGAGATTTTGA
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