FC878529

Overview
NameFC878529
Unique NameFC878529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878529 vs. ExPASy Swiss-Prot
Match: UBP5_ARATH (Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2)

HSP 1 Score: 357.451 bits (916), Expect = 5.985e-98
Identity = 175/238 (73.53%), Postives = 204/238 (85.71%), Query Frame = 1
Query:  178 MAEVT---TRSRGELTPEEERVLIRDIAISSEASSKEGDTFFLINQRWWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVEVL 882
            MAEV+   + S  +L+PEEERV IRDIAI++EA+SKEGDTF+LI QRWWQ WI+YVNQDQP NT DGSSL EH +S GSS  K+PS IDNSDL+ D++ EDP    EI++TL EGRDY+LLPQEVWNQL SWYGGGPTLAR+VISSGLSQTELAVEVYPLRLQLL+MP+ + S IRISKKETI ELHRRAC IF L+ E + IWDYYGH+K++LMND+D+TLDDAN+QMDQDILVEVL
Sbjct:    1 MAEVSMGSSSSSTDLSPEEERVFIRDIAIAAEANSKEGDTFYLITQRWWQEWIEYVNQDQPCNTNDGSSLSEHCDSPGSSTLKKPSRIDNSDLIYDSSLEDPSNTSEIIETLQEGRDYVLLPQEVWNQLRSWYGGGPTLARRVISSGLSQTELAVEVYPLRLQLLLMPKSDHSAIRISKKETIRELHRRACEIFDLDSEHVRIWDYYGHQKYSLMNDLDKTLDDANLQMDQDILVEVL 238          
BLAST of FC878529 vs. ExPASy Swiss-Prot
Match: UBP9_ARATH (Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana GN=UBP9 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.005e-36
Identity = 81/223 (36.32%), Postives = 131/223 (58.74%), Query Frame = 1
Query:  214 TPEEERVLIRDIAISSEASSKEGDTFFLINQRWWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMD-RTLDDANIQMDQDILVEV 879
            TPEEE+ ++ ++   SE + KEG+ +F+I++RW+  W  YV Q             + + S  SS + RP  IDN D++    +E     P++   L+E  DY+L+PQEVW +L  WY GGP + RK+I  G      +VEVYPL L L        + IR+ K+ +I EL+ + C++  +  E+  IWDY+  RK+ L++ +  ++L+++++ MDQDIL+EV
Sbjct:   20 TPEEEKRIVSELITESEDNLKEGNLYFVISKRWYTSWEKYVEQST-----------KEYISGESSEASRPGPIDNHDIIE---SESDVNDPQLRRLLMERVDYVLVPQEVWKRLVEWYSGGPPIERKLICQGFYTRSYSVEVYPLCLMLTDGRDESRTVIRLGKQASIRELYEKVCALTGVPQEKAHIWDYFDKRKNGLLDSLSYKSLEESSLHMDQDILLEV 228          
BLAST of FC878529 vs. ExPASy Swiss-Prot
Match: UBP10_ARATH (Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana GN=UBP10 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 2.239e-36
Identity = 81/224 (36.16%), Postives = 135/224 (60.27%), Query Frame = 1
Query:  214 TPEEERVLIRDIAISSEASSKEGDTFFLINQRWWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLV-NDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMD-RTLDDANIQMDQDILVEV 879
            TPEEE+ ++ ++   SE + K+G+ +F+I++RW+  W +YV ++  N    G S          S + RP  IDN D++ +D+   DP    ++   L+EG DY+L+P++VW +L  WY GGP + RK+I  G      +VEVYPL L L        + IR+ K+ +I EL+ + C++  +  E+  IWDY+  RK+ L++ +  ++L+++++ MDQDILVEV
Sbjct:   20 TPEEEKRIVSELTSESEDNLKQGNLYFVISKRWYTSWQEYV-ENSANECSTGES----------SEAPRPGPIDNHDIIESDSDINDP----QLRRLLVEGEDYVLVPKQVWKRLVEWYSGGPPIERKLICQGFYTRSYSVEVYPLCLMLTDGRDESRTVIRLGKQASIRELYEKVCAMTGVPQEKAHIWDYFDKRKNGLLDPLSYKSLEESSLHMDQDILVEV 228          
BLAST of FC878529 vs. ExPASy Swiss-Prot
Match: UBP11_ARATH (Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana GN=UBP11 PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.774e-33
Identity = 81/223 (36.32%), Postives = 126/223 (56.50%), Query Frame = 1
Query:  214 TPEEERVLIRDIAISSEASSKEGDTFFLINQRWWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMN-DMDRTLDDANIQMDQDILVEV 879
            TPEEER ++ ++   +EA  KEG+ +F+I+ RW+  W  +V             L E F S   S   RP  IDN D+++   +E   + P++   L EG DY L+ QEVW +L  WY GGP + RK+IS G      +VEVY L L L        + IR+SK+ +IG+L+   C+   +  E+  IWDY+  +K  L++   ++++++A +Q +QDIL+EV
Sbjct:   18 TPEEERRIVTELNNEAEADLKEGNLYFVISNRWYTRWQRFVGL-----------LTEEFRSGEPSEVTRPGPIDNHDIID---SESDASDPQLRMMLEEGVDYTLVQQEVWRKLVKWYKGGPPVPRKLISQGFYTKSFSVEVYLLCLTLTDSRDESTTIIRLSKQASIGQLYEMVCAGKGVAKEKARIWDYFEKKKSVLLDPSSEQSVEEAGLQFNQDILLEV 226          
BLAST of FC878529 vs. ExPASy Swiss-Prot
Match: UBP15_MOUSE (Ubiquitin carboxyl-terminal hydrolase 15 OS=Mus musculus GN=Usp15 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.540e-19
Identity = 66/216 (30.56%), Postives = 103/216 (47.69%), Query Frame = 1
Query:  244 DIAISSEASSKEGDTFFLINQRWWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWY---GGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPR-GECSTIRISKKETIGELHRRACSIFYL-NLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 876
            DIA   + S ++GDT++L++ RW++ W  YV  D  +    G              +  P  IDNS L+ D  A+       + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L          T R SK +TI  + +    IF + + ++  +W+ Y       +N  D T+ DA +   Q +++E
Sbjct:   15 DIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------SLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKEARLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE 212          
BLAST of FC878529 vs. ExPASy Swiss-Prot
Match: UBP15_HUMAN (Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 5.540e-19
Identity = 66/216 (30.56%), Postives = 103/216 (47.69%), Query Frame = 1
Query:  244 DIAISSEASSKEGDTFFLINQRWWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWY---GGGPTLARKVISSGLSQTELAVEVYPLRLQLLVMPR-GECSTIRISKKETIGELHRRACSIFYL-NLEQICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 876
            DIA   + S ++GDT++L++ RW++ W  YV  D  +    G              +  P  IDNS L+ D  A+       + + L++  DYILLP E WN+L SWY    G   +ARKV+  G+      VEVY   L+L          T R SK +TI  + +    IF + + ++  +W+ Y       +N  D T+ DA +   Q +++E
Sbjct:   15 DIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQ------------NVYPGPIDNSGLLKDGDAQ------SLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE 212          
BLAST of FC878529 vs. ExPASy Swiss-Prot
Match: UBP4_MOUSE (Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.733e-16
Identity = 58/206 (28.16%), Postives = 100/206 (48.54%), Query Frame = 1
Query:  274 KEGDTFFLINQRWWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQLLV-MPRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 876
            + G  ++LI+ RW++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L          +   SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T+ DA +   Q +++E
Sbjct:   29 QRGAQWYLIDSRWFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQT------LKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVDDGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIE 216          
BLAST of FC878529 vs. ExPASy Swiss-Prot
Match: UBP4_BOVIN (Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.488e-16
Identity = 58/206 (28.16%), Postives = 100/206 (48.54%), Query Frame = 1
Query:  274 KEGDTFFLINQRWWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQLLV-MPRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 876
            + G  ++LI+ RW++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L          +   SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T+ DA +   Q +++E
Sbjct:   29 QRGAQWYLIDSRWFKQWKKYVGFD----SWDMYNVGEH--------NLYPGPIDNSGLFSDPESQT------LKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTVQDAGLYQGQVLVIE 216          
BLAST of FC878529 vs. ExPASy Swiss-Prot
Match: UBP4_HUMAN (Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 9.780e-16
Identity = 58/206 (28.16%), Postives = 100/206 (48.54%), Query Frame = 1
Query:  274 KEGDTFFLINQRWWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQLLV-MPRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 876
            + G  ++LI+ RW++ W  YV  D    + D  ++ EH        +  P  IDNS L +D  ++       + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L          +   SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T+ DA +   Q +++E
Sbjct:   29 QRGAQWYLIDSRWFKQWKKYVGFD----SWDMYNVGEH--------NLFPGPIDNSGLFSDPESQT------LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTVQDAGLYQGQVLVIE 216          
BLAST of FC878529 vs. ExPASy Swiss-Prot
Match: UBP4_PONAB (Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.845e-15
Identity = 57/206 (27.67%), Postives = 100/206 (48.54%), Query Frame = 1
Query:  274 KEGDTFFLINQRWWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG---GGPTLARKVISSGLSQTELAVEVYPLRLQLLV-MPRGECSTIRISKKETIGELHRRACSIFYLNLE-QICIWDYYGHRKHALMNDMDRTLDDANIQMDQDILVE 876
            + G  ++LI+ RW++ W  YV       + D  ++ EH        +  P  IDNS L +D  ++       + + L++  DY+L+P E WN+L +WYG   G   + RKV+  GL      VEVY L L+L          +   SK +TI  + +    +F +  E +  +W+ Y    +  ++ +D T+ DA + + Q +++E
Sbjct:   29 QRGAQWYLIDSRWFKQWKKYVGF----GSWDMYNVGEH--------NLFPGPIDNSGLFSDPESQT------LKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAEREARLWNKYMSNTYEQLSKLDNTVQDAGLYLGQVLVIE 216          
The following BLAST results are available for this feature:
BLAST of FC878529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
UBP5_ARATH5.985e-9873.53Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabido... [more]
UBP9_ARATH1.005e-3636.32Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabido... [more]
UBP10_ARATH2.239e-3636.16Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabid... [more]
UBP11_ARATH1.774e-3336.32Putative ubiquitin carboxyl-terminal hydrolase 11 ... [more]
UBP15_MOUSE5.540e-1930.56Ubiquitin carboxyl-terminal hydrolase 15 OS=Mus mu... [more]
UBP15_HUMAN5.540e-1930.56Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo s... [more]
UBP4_MOUSE5.733e-1628.16Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus mus... [more]
UBP4_BOVIN7.488e-1628.16Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos tau... [more]
UBP4_HUMAN9.780e-1628.16Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sa... [more]
UBP4_PONAB2.845e-1527.67Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo a... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA73AH02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878529 ID=FC878529; Name=FC878529; organism=Citrus clementina; type=EST; length=882bp
CGCAAAGCCTGGGTTTCTCTCTTCACTCAAAATACCTTATTTTTATTTTA
ATTATTATTTTGAATTTCTATAATTTTCAATATTTCCCCTTCGCACTCCG
TTCGGCGTCTGAGAAAATCGAATTTGAAAATCTACGGAATTTATTCGTTT
AATCAGATTTGCTAGCGAGGGAGAGAAATGGCGGAGGTGACGACGCGTAG
CCGCGGGGAGCTGACGCCAGAAGAAGAGAGGGTTTTGATCAGAGACATTG
CGATTTCCTCCGAAGCTTCTAGCAAAGAAGGCGATACATTTTTTCTCATC
AATCAAAGATGGTGGCAACATTGGATTGATTATGTAAACCAAGATCAGCC
AAATAACACAGGCGATGGATCCTCTTTGTTGGAACATTTCAATTCAGCTG
GTTCAAGTGCGTCAAAGAGGCCTTCTGGTATTGATAATTCTGATTTGGTA
AATGATGCAACAGCGGAGGACCCTGGCGCCGGCCCTGAAATTGTGGATAC
TTTGCTGGAAGGCCGAGATTATATACTGCTTCCACAAGAAGTTTGGAACC
AATTGCATTCATGGTATGGAGGTGGCCCGACATTGGCAAGGAAAGTAATC
AGTTCAGGTCTCTCTCAGACAGAGTTGGCTGTAGAGGTGTATCCTCTGCG
CCTTCAACTACTTGTGATGCCAAGAGGTGAATGCTCTACCATAAGAATAA
GCAAAAAGGAAACCATTGGAGAACTTCATCGAAGAGCTTGCAGTATTTTT
TATCTTAATTTAGAACAAATATGCATTTGGGATTACTATGGCCATCGGAA
ACATGCTCTGATGAATGACATGGATAGAACACTTGATGATGCAAACATAC
AGATGGATCAGGATATTCTGGTGGAGGTCCTT
back to top