FC878530

Overview
NameFC878530
Unique NameFC878530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length838
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878530 vs. ExPASy Swiss-Prot
Match: UGPI7_ARATH (Uncharacterized GPI-anchored protein At4g28100 OS=Arabidopsis thaliana GN=At4g28100 PE=1 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 2.109e-89
Identity = 177/260 (68.08%), Postives = 197/260 (75.77%), Query Frame = 1 
Query:   82 TLVILVSA---FHLSFAGLLAEPASGHDQPLKPGEYASTNTVPAFPAQTQAATCRLDLSAELFGGVNEACGRDLDRSRCCPVLAAWLFAAHSRYALQVXXXXXXXXXXXXXXXXX---SQKCVNSLQSALVSKNVKIPQPNASCDAILCFCGIRLHQISSLSCPAAFNVTAGFRNVTPTAAVKNLEKNCRNSSYSGCTKCLGALQKLK--GGSKNGTAEHEDNRASKMFSRDCQLMGLTWLLARNKTAYIPTVSAVLRAI 837
            TL+IL+     F    + LL EP     QP         NTVPAFP +TQA +CRLDLS ELFGGVNEACGR+LDRSRCCPVLAAWLFAAH+R ALQ+                    SQKCVN+LQSAL++K +KIPQPN+SCDAILCFCGIRLHQISSLSCPAAFNV++GF+N TPTAAVKNLEK CRNSSYSGCT+CLGALQKLK  GG+K  T E    R +KM S+DCQLMGLTWLLARNKTAYIPTVSAVLRAI
Sbjct:    6 TLLILLLCSLLFSTVLSNLLVEPV----QP---------NTVPAFPVETQAQSCRLDLSNELFGGVNEACGRNLDRSRCCPVLAAWLFAAHARSALQLPAPAPTPESSDPDEPMKPDDSQKCVNTLQSALLTKQIKIPQPNSSCDAILCFCGIRLHQISSLSCPAAFNVSSGFKNATPTAAVKNLEKECRNSSYSGCTRCLGALQKLKVRGGNKKTTTE----RGTKMMSKDCQLMGLTWLLARNKTAYIPTVSAVLRAI 248
The following BLAST results are available for this feature:
BLAST of FC878530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UGPI7_ARATH2.109e-8968.08Uncharacterized GPI-anchored protein At4g28100 OS=... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA18DG08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878530 ID=FC878530; Name=FC878530; organism=Citrus clementina; type=EST; length=838bp
CGTTAATGTTCAAAACCCAGTAGAAAAAAAACCCACTTCTTTTGCTTTCA
CTTGAAAATGCCACCTTTCACCTTTATTTTCACGTTAGTGATTCTGGTAT
CCGCTTTTCATCTCTCATTTGCCGGTTTACTTGCCGAACCGGCATCCGGT
CACGACCAACCGTTGAAACCTGGAGAGTACGCGTCCACCAACACGGTCCC
AGCGTTCCCGGCCCAGACCCAGGCAGCCACCTGCCGGCTCGACCTCTCCG
CCGAGCTTTTCGGCGGGGTTAATGAAGCATGCGGCCGTGACCTTGACCGG
AGCCGGTGCTGTCCCGTACTAGCGGCTTGGCTGTTCGCGGCTCACTCCCG
GTACGCTCTCCAGGTCCCGGCGGCGGCTCCAGCCGCTGAGCCGGACCAAC
CCATGATGCCTGATGACTCGCAGAAGTGCGTCAACTCGCTGCAAAGCGCT
TTGGTGAGCAAGAACGTGAAGATTCCGCAACCCAATGCGAGTTGCGATGC
GATTCTGTGTTTTTGTGGGATTAGGCTTCATCAAATCAGCTCGCTTAGCT
GCCCGGCTGCGTTTAATGTGACTGCCGGCTTTCGAAATGTGACGCCCACT
GCTGCTGTTAAAAATCTGGAGAAGAATTGCAGAAATTCTTCGTACTCAGG
CTGTACTAAATGCCTTGGTGCACTTCAAAAGCTAAAAGGCGGGAGCAAGA
ACGGAACAGCAGAACACGAAGACAACAGGGCAAGCAAGATGTTCAGCAGG
GACTGCCAGCTGATGGGGCTGACGTGGCTCCTGGCGCGCAACAAAACGGC
GTACATCCCCACCGTTTCAGCGGTGTTGCGGGCCATAA
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