FC878535

Overview
NameFC878535
Unique NameFC878535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878535 vs. ExPASy Swiss-Prot
Match: MKS1_ARATH (Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.778e-17
Identity = 69/169 (40.83%), Postives = 85/169 (50.30%), Query Frame = 1 
Query:  238 PSAGQRRQDQLQIQGPRPPPLSIHRDSHXXXXXXXXXXXXTEQ-QPHHHSERQQPVIIYSISPKVINVTVADFMTTVQRLT----GAXXXXXXXXXXXPAARIAVVEKVMDSPRDKASSAAVINNDYVVEETEDQGRGEGAEFEVGRVPGILSPS-TLPPLVQEMYFSP 726
            PS  Q ++ QLQI GPRP PLS+H+DSH              + QP  +  R+ PV+IY++SPKV++ T ++FM  VQRLT    G            PAAR+A  E    SPR     AA    D  VE   +    E AEF  G  PGILSPS  L P      FSP
Sbjct:   12 PSDQQNQKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPRE-PVVIYAVSPKVVHATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENA--SPRGGKEPAA---RDETVE--INTAMEEAAEFG-GYAPGILSPSPALLPTASTGIFSP 171
The following BLAST results are available for this feature:
BLAST of FC878535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MKS1_ARATH4.778e-1740.83Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA85CD05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA85CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878535 ID=FC878535; Name=FC878535; organism=Citrus clementina; type=EST; length=842bp
AAAAAATTTTGAGGTCAAAGTCAATTATATGAAGCCCCGTTCCAATGAAT
ATATGGTGTTTTTTTGAAAATCATCTCTTTCGTCAAACCATTCATTTCTG
GAGCGGTAGAGATTTTTTTTTTTTCCCCATCTTAGCTCTCTCTCAAGTCT
CAAATCTCAATCATTTTTCATCTGTAAAATCACACCCCTGCACTTTTATA
TTTTCTCGATTTTGACCATATGGACTCGTCAAACTTGCCCAGCGCGGGCC
AGAGGAGACAGGATCAGCTGCAAATCCAAGGCCCCCGGCCTCCGCCGCTA
AGCATCCACAGAGACTCCCACAAGATCAAGAAACCACCAAAGCCACCGCT
GCCGCCGACGGAGCAGCAACCCCACCACCACAGCGAACGACAGCAGCCGG
TGATCATCTACTCCATCTCTCCCAAAGTCATCAACGTCACAGTCGCCGAC
TTCATGACCACTGTCCAGCGCCTGACCGGTGCCTCTTCTTCTTCTTCCGG
CGACGGAGACGTTTCTCCAGCTGCGAGAATAGCGGTGGTGGAGAAAGTCA
TGGACAGTCCCAGGGATAAGGCCAGTTCCGCTGCTGTAATAAATAATGAT
TACGTGGTGGAAGAAACAGAAGATCAAGGAAGAGGAGAAGGGGCTGAATT
TGAAGTGGGTCGAGTTCCGGGGATACTGTCCCCGTCGACGTTGCCGCCGC
TGGTTCAAGAAATGTACTTCTCTCCAACGGCGGCGTCGGCATCGGCGGGG
GCTGACCCATTTGGGTTATCTACGCATGGGAATTATGGGTTCTTGAATAA
CAGTCCATCTCCTTCGGGTTTGTTCTCATCAGGTTTTTTGGG
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