FC878536

Overview
NameFC878536
Unique NameFC878536
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878536 vs. ExPASy Swiss-Prot
Match: ZN207_HUMAN (Zinc finger protein 207 OS=Homo sapiens GN=ZNF207 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.269e-44
Identity = 97/184 (52.72%), Postives = 110/184 (59.78%), Query Frame = 2
Query:   83 MGRKKKKASKPWCWYCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIPPEDLREHXXXXXXXXXXXXXXXXXXXPAA---KKRATPALLGAGPSGVSQGILPTPMAGPPSVYNPHMQMNMMGGIPPHFMQHPRMMMQGMRPMFPAV 625
            MGRKKKK  KPWCWYCNR+FDDEKILIQHQKAKHFKCHICHKKLYTGPGL+IHCMQVHKE ID VPN++P R++IE+EIYGMEGIP +D+ E                             A        P    QG +P PMA P     P     M  GIPP  M     +M GM P+ P +
Sbjct:    1 MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIP-PMAQPGLPPVPGAP-GMPPGIPP-LMPGVPPLMPGMPPVMPGM 181          
BLAST of FC878536 vs. ExPASy Swiss-Prot
Match: ZN207_PONAB (Zinc finger protein 207 OS=Pongo abelii GN=ZNF207 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.228e-44
Identity = 96/184 (52.17%), Postives = 109/184 (59.24%), Query Frame = 2
Query:   83 MGRKKKKASKPWCWYCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIPPEDLREHXXXXXXXXXXXXXXXXXXXPAA---KKRATPALLGAGPSGVSQGILPTPMAGPPSVYNPHMQMNMMGGIPPHFMQHPRMMMQGMRPMFPAV 625
            MGRKKKK  KPWCWYCNR+FDDEKIL QHQKAKHFKCHICHKKLYTGPGL+IHCMQVHKE ID VPN++P R++IE+EIYGMEGIP +D+ E                             A        P    QG +P PMA P     P     M  GIPP  M     +M GM P+ P +
Sbjct:    1 MGRKKKKQLKPWCWYCNRDFDDEKILTQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEGIPEKDMDEGRRLLEQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIP-PMAQPGLPPVPGAP-GMPPGIPP-LMPGVPPLMPGMPPVMPGM 181          
The following BLAST results are available for this feature:
BLAST of FC878536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ZN207_HUMAN1.269e-4452.72Zinc finger protein 207 OS=Homo sapiens GN=ZNF207 ... [more]
ZN207_PONAB8.228e-4452.17Zinc finger protein 207 OS=Pongo abelii GN=ZNF207 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA73AH04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878536 ID=FC878536; Name=FC878536; organism=Citrus clementina; type=EST; length=736bp
TAATTAATAAGTTTATTTTAAGTGTAGTGACTAATCTAATAATTAAGTTG
CAGAATAGTTTGTTAAGTTAATCTCGGTCAAAATGGGTAGGAAGAAGAAG
AAGGCGTCCAAACCATGGTGCTGGTACTGCAATAGAGAATTTGACGATGA
AAAAATTTTGATACAACATCAGAAAGCGAAACATTTCAAATGTCACATTT
GTCACAAGAAACTGTACACAGGACCGGGACTGTCAATACACTGTATGCAG
GTACACAAAGAAGCTATAGACAAAGTACCAAATTCATTACCAAATAGATC
AAATATTGAAATAGAAATCTATGGTATGGAAGGTATTCCGCCAGAAGACT
TGAGGGAGCATGAAAAACAGAAATCAGGAGGCGGGGGAGGCAAAGGGTCT
GACAGTGAAGATGATGAGCCAGCTGCTAAGAAAAGAGCTACTCCAGCCTT
ACTGGGCGCGGGTCCCTCGGGCGTGTCCCAGGGCATCCTGCCGACGCCCA
TGGCCGGCCCGCCCTCCGTCTACAACCCCCACATGCAGATGAACATGATG
GGCGGTATCCCTCCTCACTTTATGCAGCATCCTAGAATGATGATGCAAGG
TATGAGGCCGATGTTCCCGGCCGTCAGTATCCCTACCTCCACACCTAGCA
GTAAGCCTACCTTCCCTGCGTATAGCAACGCCCACAATAAGCGCCCCGCC
GACCCTGGCGGAGGCGGCGCCGACGGCCCCCGCGCC
back to top