FC878537

Overview
NameFC878537
Unique NameFC878537
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_HELAN (Seryl-tRNA synthetase OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.369e-52
Identity = 99/142 (69.72%), Postives = 120/142 (84.51%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHT 436
            N+INK++++L++ G D S ++  T E K  +A K+ EV+EA  A+ +KLE VGNLVHDSVPVSNDEA+NA+VRTWGE+R E  LKNHVELVELLGIADLKKGA++AGGRG+YLKGDGVRLNQALINFGLDFLEK+ YT L T
Sbjct:   57 NRINKEVAKLRISGGDASSLIKNTEENKDSTAKKQAEVQEARTALYSKLETVGNLVHDSVPVSNDEADNAVVRTWGERREETNLKNHVELVELLGIADLKKGANVAGGRGYYLKGDGVRLNQALINFGLDFLEKRKYTALQT 198          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_ARATH (Seryl-tRNA synthetase OS=Arabidopsis thaliana GN=At5g27470 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.859e-47
Identity = 93/141 (65.96%), Postives = 115/141 (81.56%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEP---KLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYT 424
            NK+NKQ++QLK+  +D SE++ +T + KQ S  KE EVREA+AA+KAKLE VGNLVHDSVPV  DEANN +++ WGEKR      KLKNHV+LVELLGIAD K+GA+IAG RGF+LKGDG+ LNQALINFGL FL+K+ +T
Sbjct:   57 NKLNKQVAQLKIKKEDASEIIQQTEKNKQDSTAKEAEVREAYAALKAKLEQVGNLVHDSVPVDKDEANNLVIKLWGEKRFSTPGLKLKNHVDLVELLGIADTKRGAEIAGARGFFLKGDGLMLNQALINFGLTFLKKRGFT 197          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYSC_DICDI (Seryl-tRNA synthetase, cytoplasmic OS=Dictyostelium discoideum GN=serS PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.578e-24
Identity = 55/141 (39.01%), Postives = 87/141 (61.70%), Query Frame = 2
Query:   14 KINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHT 436
            K+NK ++  K  G+   E++ +  E+ Q     + EV E    ++ KL  +GN+VH+SVP+ N+E NN I++TWGE +T   L +H EL+E++   D ++G  ++G R ++LKG GV LNQA+INF L  + K+    L T
Sbjct:   59 KLNKSVAMKKKAGESADEIIAQAEELNQSIIKLKAEVSEVELLLRKKLRPIGNIVHESVPIDNNEDNNQIIKTWGECKTSEGLLHHHELLEMIDGYDPERGTLVSGHRCYFLKGIGVLLNQAIINFALMHMTKRGSVPLQT 199          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_AQUAE (Seryl-tRNA synthetase OS=Aquifex aeolicus GN=serS PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.296e-22
Identity = 62/140 (44.29%), Postives = 83/140 (59.29%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT---EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSY 421
            NK++K+I +LK  GKD +E+  +  E+K++    E E+R+    +K  L  + NL H SVPV  DE +N  VR WGE R    EP  K H E+ E LGI D K+GA ++G R   + G G RL +ALINF LD   KK Y
Sbjct:   54 NKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVGEDEKDNVEVRRWGEPRKFDFEP--KPHWEIGERLGILDFKRGAKLSGSRFTVIAGWGARLERALINFMLDLHTKKGY 191          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_NITMS (Seryl-tRNA synthetase OS=Nitrosopumilus maritimus (strain SCM1) GN=serS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.250e-21
Identity = 55/141 (39.01%), Postives = 86/141 (60.99%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGE-KRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLL 430
            N+I  +I+Q K  G+D S ++ +   +  + A  E +  E  +        V NLVH+SVPV  D+  N  +R WGE  + + K+ +H+++ E L + DL++ A +AG R +YLK D VRLNQ+LI+F LDFL +K Y+L+
Sbjct:   52 NEIGNEIAQKKKAGEDTSTILDEMKNVSAELAKLESQQEEIESKYAKLAFTVPNLVHESVPVGPDDTANKEMRKWGEIPQFDFKINDHIDMSENLDLVDLERAAKVAGARFYYLKNDLVRLNQSLIHFALDFLAEKEYSLV 192          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_THETN (Seryl-tRNA synthetase OS=Thermoanaerobacter tengcongensis GN=serS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.404e-19
Identity = 57/144 (39.58%), Postives = 80/144 (55.56%), Query Frame = 2
Query:    2 NHLNKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT---EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDF-LEKKSY 421
            N  N  +  I++LK  GKD SE++ K  E+  +  D E E+RE    ++  L  + N+ H+SVP+   + +N  VR WGE R    EP  K H E+ E LGI D +  + + G R  + KG G RL +ALINF LD  +EK  Y
Sbjct:   49 NKRNTESDNIARLKREGKDASELIAKMKELSDKIKDMEQELREIEEEMEKILWTIPNIPHESVPIGESDEDNVEVRRWGEPRKFDFEP--KPHWEIGEALGILDFEAASRVTGSRFVFYKGLGARLERALINFMLDLHIEKHGY 190          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_CALS8 (Seryl-tRNA synthetase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=serS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.446e-19
Identity = 51/142 (35.92%), Postives = 85/142 (59.86%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDF-LEKKSYTLL 430
            N+ +K+I +LK  GKD +E++ +  E+  +  + + +V+E    ++  L  + N+ H+SVP+  D+  N  VR WGE R  + ++K H E+ E LGI D ++ + ++G R  + +G G RL +ALINF LD  +EK  Y  L
Sbjct:   52 NQKSKEIPKLKKEGKDTTELMNELKELSDKIKELDSQVKEVEDEIEKILLTIPNIPHESVPIGKDDTENVEVRRWGEPRVPDFEIKPHWEIGEKLGILDFERASKVSGSRFTFYRGLGARLERALINFMLDLHIEKHGYVEL 193          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYSC_SCHPO (Seryl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=SPAC29A4.15 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.904e-19
Identity = 56/147 (38.10%), Postives = 85/147 (57.82%), Query Frame = 2
Query:    8 LNKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV---GNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKN---HVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLL 430
            +N++ K+I       +D SE++ + N + ++   K+  + +  A  K  L VV   GN+VHDSVPVS DE NN I+R W  +    + KN   H E++  L   D ++G  ++G RG++L+  GV  N ALI +GLDFLEK+ Y  L
Sbjct:   56 INRVQKEIGLKMKAKEDASELLEEKNSLTER---KKNLIEQETAKNKEMLNVVSSIGNIVHDSVPVSMDEDNNEIIRKWAPEGVTVEKKNCLSHHEVLTRLDGYDPERGVKVSGHRGYFLRQYGVFFNLALIQYGLDFLEKRGYIAL 199          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_ANATD (Seryl-tRNA synthetase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=serS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.916e-18
Identity = 51/143 (35.66%), Postives = 86/143 (60.14%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEP--KLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDF-LEKKSYTLL 430
            N+ +K++ +LK  GKD ++++ +  ++  +  + + +V+E    ++  L  + N+ H+SVPV  D+  N  VR WGE R EP  ++K H E+   LGI D ++ + ++G R  + +G G RL +ALINF LD  +EK  YT L
Sbjct:   52 NQKSKEVPKLKKEGKDVTDLMNELKDLSDKIKELDSKVKEVEDEIEKILLTIPNIPHESVPVGKDDTENVEVRRWGEVR-EPDFEIKPHWEIGVNLGILDFERASKVSGSRFTFYRGLGARLERALINFMLDLHIEKHGYTEL 193          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS1_ENTFA (Seryl-tRNA synthetase 1 OS=Enterococcus faecalis GN=serS1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.385e-18
Identity = 55/135 (40.74%), Postives = 75/135 (55.56%), Query Frame = 2
Query:    5 HLNKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT---EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLD 400
            H N+++ +I+QLK   KD S+ +    E+ +Q    + EV        A  E + NL H+SVPV  DEA N  VR W   +T   EP  K H E+ E LGI D ++GA ++G R  Y KG G RL +A+ NF LD
Sbjct:   51 HRNQVSGEIAQLKRAQKDASQQLLNMQEVSEQIKVLDQEVVHLQEQCTAIAERLPNLPHESVPVGADEAANVEVRRWSTPKTFSFEP--KPHWEIGEALGILDFERGAKVSGSRFLYYKGLGARLERAVYNFMLD 183          
The following BLAST results are available for this feature:
BLAST of FC878537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
SYS_HELAN1.369e-5269.72Seryl-tRNA synthetase OS=Helianthus annuus PE=2 SV... [more]
SYS_ARATH3.859e-4765.96Seryl-tRNA synthetase OS=Arabidopsis thaliana GN=A... [more]
SYSC_DICDI1.578e-2439.01Seryl-tRNA synthetase, cytoplasmic OS=Dictyosteliu... [more]
SYS_AQUAE4.296e-2244.29Seryl-tRNA synthetase OS=Aquifex aeolicus GN=serS ... [more]
SYS_NITMS1.250e-2139.01Seryl-tRNA synthetase OS=Nitrosopumilus maritimus ... [more]
SYS_THETN3.404e-1939.58Seryl-tRNA synthetase OS=Thermoanaerobacter tengco... [more]
SYS_CALS84.446e-1935.92Seryl-tRNA synthetase OS=Caldicellulosiruptor sacc... [more]
SYSC_SCHPO9.904e-1938.10Seryl-tRNA synthetase, cytoplasmic OS=Schizosaccha... [more]
SYS_ANATD4.916e-1835.66Seryl-tRNA synthetase OS=Anaerocellum thermophilum... [more]
SYS1_ENTFA8.385e-1840.74Seryl-tRNA synthetase 1 OS=Enterococcus faecalis G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ5YP21RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YP21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878537 ID=FC878537; Name=FC878537; organism=Citrus clementina; type=EST; length=580bp
CAACCATTTGAACAAAATCAATAAGCAAATCTCTCAGCTCAAACTCTTTG
GTAAGGATTTCTCTGAGATGGTTACAAAGACAAATGAGATCAAGCAACAA
TCGGCAGATAAAGAAGTTGAGGTCCGTGAGGCTTGGGCTGCAGTAAAAGC
AAAGCTGGAAGTAGTTGGAAACCTTGTGCATGATTCAGTACCAGTCAGCA
ATGATGAAGCAAATAATGCTATAGTTAGAACATGGGGTGAGAAAAGGACG
GAGCCAAAACTGAAGAATCATGTTGAGCTTGTTGAGCTTCTTGGCATTGC
GGATCTGAAGAAAGGTGCTGATATAGCAGGAGGAAGAGGTTTCTATCTGA
AAGGAGATGGTGTACGGCTTAATCAAGCTTTGATTAATTTTGGTCTTGAT
TTTTTGGAGAAAAAGAGTTATACATTGTTACATACTCCACCTCCTCCGCC
AGTTCTTTCACCACCACCACCGCCGCCGCCACCAGTATACTCGCCACCTC
CTCCGCCACCGTCACCACCACCACCAGTATACTTGCCACCTCCTCCTCCT
CCACCACCCCCACCTCCTTCGCCACCTCCG
back to top