FC878541

Overview
NameFC878541
Unique NameFC878541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length824
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878541 vs. ExPASy Swiss-Prot
Match: LMAN1_RAT (Protein ERGIC-53 OS=Rattus norvegicus GN=Lman1 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.529e-49
Identity = 102/270 (37.78%), Postives = 159/270 (58.89%), Query Frame = 2
Query:   29 LILAPSLFLAFNLFGSDTDPIFQVDERFE---RRKQLVHSFKNPFYLVR--GTISFWASSGSTVITNDYVRLTPAEKSRAGTIWNTKPTTFHNWEVEMSFKVGSTSALGADGFAMWYTKESRKEGPIFGNQDQWDGLGVVFDTFDNDGSSDNPSINVFRNDGSWSYNSGQDGKHQSLGQCRLYYRN--YETQIKMTYIDSRLQILTK---LQNQNDWSVCTTV-SANLPSGYYFGLTAATGGLVDNHDVYKFEVTRLGEQGRREDTPNAD 805
            L+L+ S F+  +  G D         + E   RR +  +SFK P +LV+  GT+ FWA +G+ + + D +R+ P+ KS+ G++W      F NWEVE++F+V     +GADG A+WYT+    +GP+FG+ D W+G+G+ FD+FDNDG  +NP+I V  N+G  +Y+   DG  Q+L  C+  +RN  Y  + K+TY    L ++       ++ND+  C  V +  +P+  +FG++AATGGL D+HDV  F   +L E G+   TP  D
Sbjct:   20 LLLSFSQFVGSDGMGGDAAAPGAAGTQAELPHRRFEYKYSFKGP-HLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQGLDGPVFGSADMWNGVGIFFDSFDNDGKKNNPAIVVVGNNGQINYDHQNDGATQALASCQRDFRNKPYPVRAKITYYQKTLTVMINNGFTPDKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPEKD 288          
BLAST of FC878541 vs. ExPASy Swiss-Prot
Match: LMAN1_HUMAN (Protein ERGIC-53 OS=Homo sapiens GN=LMAN1 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.751e-48
Identity = 93/238 (39.08%), Postives = 148/238 (62.18%), Query Frame = 2
Query:  116 RRKQLVHSFKNPFYLVR--GTISFWASSGSTVITNDYVRLTPAEKSRAGTIWNTKPTTFHNWEVEMSFKVGSTSALGADGFAMWYTKESRKEGPIFGNQDQWDGLGVVFDTFDNDGSSDNPSINVFRNDGSWSYNSGQDGKHQSLGQCRLYYRN--YETQIKMTYIDSRLQILTK---LQNQNDWSVCTTV-SANLPSGYYFGLTAATGGLVDNHDVYKFEVTRLGEQGRREDTPNAD 805
            RR +  +SFK P +LV+  GT+ FWA +G+ + ++D +R+ P+ KS+ G++W      F NWEVE++F+V     +GADG A+WY +    EGP+FG+ D W+G+G+ FD+FDNDG  +NP+I +  N+G   Y+   DG  Q+L  C+  +RN  Y  + K+TY  + L ++       ++ND+  C  V +  +P+  +FG++AATGGL D+HDV  F   +L E G+   TP+ +
Sbjct:   44 RRFEYKYSFKGP-HLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKE 280          
BLAST of FC878541 vs. ExPASy Swiss-Prot
Match: LMAN1_MOUSE (Protein ERGIC-53 OS=Mus musculus GN=Lman1 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.902e-48
Identity = 94/238 (39.50%), Postives = 146/238 (61.34%), Query Frame = 2
Query:  116 RRKQLVHSFKNPFYLVR--GTISFWASSGSTVITNDYVRLTPAEKSRAGTIWNTKPTTFHNWEVEMSFKVGSTSALGADGFAMWYTKESRKEGPIFGNQDQWDGLGVVFDTFDNDGSSDNPSINVFRNDGSWSYNSGQDGKHQSLGQCRLYYRN--YETQIKMTYIDSRLQILTK---LQNQNDWSVCTTV-SANLPSGYYFGLTAATGGLVDNHDVYKFEVTRLGEQGRREDTPNAD 805
            RR +  +SFK P +LV+  GT+ FWA +G+ + + D +R+ P+ KS+ G++W      F NWEVE++F+V     +GADG A+WYT+    +GP+FG+ D W+G+G+ FD+FDNDG  +NP+I V  N+G  +Y+   DG  Q+L  C+  +RN  Y  + K+TY    L ++       ++ND+  C  V +  +P+  +FG++AATGGL D+HDV  F   +L E G+   T   D
Sbjct:   52 RRFEYKYSFKGP-HLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKAKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQGLDGPVFGSADTWNGVGIFFDSFDNDGKKNNPAIVVIGNNGQINYDHQNDGATQALASCQRDFRNKPYPVRAKITYYQKTLTVMINNGFTPDKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTAEKD 288          
BLAST of FC878541 vs. ExPASy Swiss-Prot
Match: LMAN1_CERAE (Protein ERGIC-53 OS=Cercopithecus aethiops GN=LMAN1 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.902e-48
Identity = 93/238 (39.08%), Postives = 147/238 (61.76%), Query Frame = 2
Query:  116 RRKQLVHSFKNPFYLVR--GTISFWASSGSTVITNDYVRLTPAEKSRAGTIWNTKPTTFHNWEVEMSFKVGSTSALGADGFAMWYTKESRKEGPIFGNQDQWDGLGVVFDTFDNDGSSDNPSINVFRNDGSWSYNSGQDGKHQSLGQCRLYYRN--YETQIKMTYIDSRLQILTK---LQNQNDWSVCTTV-SANLPSGYYFGLTAATGGLVDNHDVYKFEVTRLGEQGRREDTPNAD 805
            RR +  +SFK P +LV+  GT+ FWA +G+ + ++D +R+ P+ KS+ G++W      F NWEVE++F+V     +GADG A+WYT+    EGP+FG+ D W+G+G+ FD+FDNDG  +NP+I +  N+G   Y+   DG  Q+L  C+  +RN  Y  + K+ Y    L ++       ++ND+  C  V +  +P+  +FG++AATGGL D+HDV  F   +L E G+   TP+ +
Sbjct:   44 RRFEYKYSFKGP-HLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKAKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKIIYYQKTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGVSAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKE 280          
BLAST of FC878541 vs. ExPASy Swiss-Prot
Match: LMAN2_HUMAN (Vesicular integral-membrane protein VIP36 OS=Homo sapiens GN=LMAN2 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.876e-42
Identity = 94/248 (37.90%), Postives = 146/248 (58.87%), Query Frame = 2
Query:   47 LFLAFNLFGSDTDPIFQVDERFERRKQLVHSFKNPFYLV-RGTISFWASSGSTVITNDYVRLTPAEKSRAGTIWNTKPTTFHNWEVEMSFKVGSTSA--LGADGFAMWYTKESRKEGPIFGNQDQWDGLGVVFDTFDNDGSSDN--PSINVFRNDGSWSYNSGQDGKHQSLGQCRLYYRN--YETQIKMTYIDSRLQILTKLQNQNDWSVCTTVS-ANLPSGYYFGLTAATGGLVDNHDVYKFEVTRL 766
            LFL   L GS T  I   +    +R+   HS   P+  V   ++  W   GST++T+ YVRLTP E+S+ G+IWN +P    +WE+ + FKV  T    L  DG A+WYT++    GP+FG++D + GL +  DT+ ND +++   P I+V  N+GS SY+  +DG+   L  C   +RN  ++T + + Y   RL ++T L+++N+W  C  ++   LP+GYYFG +A TG L DNHD+   ++ +L
Sbjct:   33 LFLLL-LLGSVTADITDGNSEHLKRE---HSLIKPYQGVGSSSMPLWDFQGSTMLTSQYVRLTPDERSKEGSIWNHQPCFLKDWEMHVHFKVHGTGKKNLHGDGIALWYTRDRLVPGPVFGSKDNFHGLAIFLDTYPNDETTERVFPYISVMVNNGSLSYDHSKDGRWTELAGCTADFRNRDHDTFLAVRYSRGRLTVMTDLEDKNEWKNCIDITGVRLPTGYYFGASAGTGDLSDNHDIISMKLFQL 276          
BLAST of FC878541 vs. ExPASy Swiss-Prot
Match: LMAN2_CANFA (Vesicular integral-membrane protein VIP36 OS=Canis familiaris GN=LMAN2 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.199e-42
Identity = 85/219 (38.81%), Postives = 134/219 (61.19%), Query Frame = 2
Query:  134 HSFKNPFYLV-RGTISFWASSGSTVITNDYVRLTPAEKSRAGTIWNTKPTTFHNWEVEMSFKVGSTSA--LGADGFAMWYTKESRKEGPIFGNQDQWDGLGVVFDTFDNDGSSDN--PSINVFRNDGSWSYNSGQDGKHQSLGQCRLYYRN--YETQIKMTYIDSRLQILTKLQNQNDWSVCTTVS-ANLPSGYYFGLTAATGGLVDNHDVYKFEVTRL 766
            HS   P+  V   ++  W   GST++T+ YVRLTP E+S+ G+IWN +P    +WE+ + FKV  T    L  DG A+WYT++    GP+FG++D + GL +  DT+ ND +++   P I+V  N+GS SY+  +DG+   L  C   +RN  ++T + + Y   RL ++T L+++N+W  C  ++   LP+GYYFG +A TG L DNHD+   ++ +L
Sbjct:   58 HSLIKPYQGVGSSSMPLWDFQGSTILTSQYVRLTPDERSKEGSIWNHQPCFLKDWEMHVHFKVHGTGKKNLHGDGIALWYTRDRLVPGPVFGSKDNFHGLAIFLDTYPNDETTERVFPYISVMVNNGSLSYDHSKDGRWTELAGCTADFRNRDHDTFLAVRYSRGRLTVMTDLEDKNEWKNCIDITGVRLPTGYYFGASAGTGDLSDNHDIISMKLFQL 276          
BLAST of FC878541 vs. ExPASy Swiss-Prot
Match: LMAN2_MOUSE (Vesicular integral-membrane protein VIP36 OS=Mus musculus GN=Lman2 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.178e-42
Identity = 85/219 (38.81%), Postives = 134/219 (61.19%), Query Frame = 2
Query:  134 HSFKNPFYLV-RGTISFWASSGSTVITNDYVRLTPAEKSRAGTIWNTKPTTFHNWEVEMSFKVGSTSA--LGADGFAMWYTKESRKEGPIFGNQDQWDGLGVVFDTFDNDGSSDN--PSINVFRNDGSWSYNSGQDGKHQSLGQCRLYYRN--YETQIKMTYIDSRLQILTKLQNQNDWSVCTTVS-ANLPSGYYFGLTAATGGLVDNHDVYKFEVTRL 766
            HS   P+  V   ++  W   GST++T+ YVRLTP E+S+ G+IWN +P    +WE+ + FKV  T    L  DG A+WYT++    GP+FG++D + GL +  DT+ ND +++   P I+V  N+GS SY+  +DG+   L  C   +RN  ++T + + Y   RL ++T L+++N+W  C  ++   LP+GYYFG +A TG L DNHD+   ++ +L
Sbjct:   60 HSLIKPYQGVGSSSMPLWDFQGSTMLTSQYVRLTPDERSKEGSIWNHQPCFLKDWEMHVHFKVHGTGKKNLHGDGIALWYTRDRLVPGPVFGSKDNFHGLAIFLDTYPNDETTERVFPYISVMVNNGSLSYDHSKDGRWSELAGCTADFRNRDHDTFLAVRYSRGRLTVMTDLEDKNEWKNCIDITGVRLPTGYYFGASAGTGDLSDNHDIISIKLFQL 278          
BLAST of FC878541 vs. ExPASy Swiss-Prot
Match: LMA2L_PONAB (VIP36-like protein OS=Pongo abelii GN=LMAN2L PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.244e-38
Identity = 89/250 (35.60%), Postives = 132/250 (52.80%), Query Frame = 2
Query:   47 LFLAFNLFGSDTDPI-FQVDERFERRKQLVHSFKNPFYLV-RGTISFWASSGSTVITNDYVRLTPAEKSRAGTIWNTKPTTFHNWEVEMSFKVGSTSA--LGADGFAMWYTKESRKEGPIFGNQDQWDGLGVVFDTFDNDGSSDN---PSINVFRNDGSWSYNSGQDGKHQSLGQCRLYYRN--YETQIKMTYIDSRLQILTKLQNQNDWSVCTTV-SANLPSGYYFGLTAATGGLVDNHDVYKFEVTRL 766
            + L   L GS   P      + FE  K+  HS   P+  V  G+ S W   G+ ++   Y+RLTP  +S+ G +WN  P    +WE+++ FK+       L  DG A+WYTK+  + GP+FGN D++ GLGV  DT+ N+        P I+   N+GS SY+  +DG+   LG C    RN  Y+T + + Y+   L I+  +  +++W  C  V    LP GYYFG ++ TG L DNHDV   ++  L
Sbjct:   26 MLLLLLLLGSGQGPQQVGAGQTFEYLKR-EHSLSKPYQGVGTGSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQVHFKIHGQGKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQERVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFEL 274          
BLAST of FC878541 vs. ExPASy Swiss-Prot
Match: LMA2L_HUMAN (VIP36-like protein OS=Homo sapiens GN=LMAN2L PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.244e-38
Identity = 89/250 (35.60%), Postives = 132/250 (52.80%), Query Frame = 2
Query:   47 LFLAFNLFGSDTDPI-FQVDERFERRKQLVHSFKNPFYLV-RGTISFWASSGSTVITNDYVRLTPAEKSRAGTIWNTKPTTFHNWEVEMSFKVGSTSA--LGADGFAMWYTKESRKEGPIFGNQDQWDGLGVVFDTFDNDGSSDN---PSINVFRNDGSWSYNSGQDGKHQSLGQCRLYYRN--YETQIKMTYIDSRLQILTKLQNQNDWSVCTTV-SANLPSGYYFGLTAATGGLVDNHDVYKFEVTRL 766
            + L   L GS   P      + FE  K+  HS   P+  V  G+ S W   G+ ++   Y+RLTP  +S+ G +WN  P    +WE+++ FK+       L  DG A+WYTK+  + GP+FGN D++ GLGV  DT+ N+        P I+   N+GS SY+  +DG+   LG C    RN  Y+T + + Y+   L I+  +  +++W  C  V    LP GYYFG ++ TG L DNHDV   ++  L
Sbjct:   26 MLLLLLLLGSGQGPQQVGAGQTFEYLKR-EHSLSKPYQGVGTGSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQVHFKIHGQGKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQERVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFEL 274          
BLAST of FC878541 vs. ExPASy Swiss-Prot
Match: LMA2L_BOVIN (VIP36-like protein OS=Bos taurus GN=LMAN2L PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.903e-37
Identity = 87/250 (34.80%), Postives = 131/250 (52.40%), Query Frame = 2
Query:   47 LFLAFNLFGSDTDPI-FQVDERFERRKQLVHSFKNPFYLV-RGTISFWASSGSTVITNDYVRLTPAEKSRAGTIWNTKPTTFHNWEVEMSFKVGSTSA--LGADGFAMWYTKESRKEGPIFGNQDQWDGLGVVFDTFDNDGSSDN---PSINVFRNDGSWSYNSGQDGKHQSLGQCRLYYRN--YETQIKMTYIDSRLQILTKLQNQNDWSVCTTV-SANLPSGYYFGLTAATGGLVDNHDVYKFEVTRL 766
            + L   L GS   P      + FE  K+  HS   P+  V   + S W   G+ ++   Y+RLTP  +S+ G +WN  P    +WE+++ F++       L  DG A+WYTK+  + GP+FGN D++ GLGV  DT+ N+        P I+   N+GS SY+  +DG+   LG C    RN  Y+T + + Y+   L I+  +  +++W  C  V    LP GYYFG ++ TG L DNHDV   ++  L
Sbjct:   26 MLLLLLLLGSGQGPRQVGAGQTFEYLKR-EHSLSKPYQGVGTSSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQVHFRIHGQGKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQERVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFEL 274          
The following BLAST results are available for this feature:
BLAST of FC878541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
LMAN1_RAT3.529e-4937.78Protein ERGIC-53 OS=Rattus norvegicus GN=Lman1 PE=... [more]
LMAN1_HUMAN1.751e-4839.08Protein ERGIC-53 OS=Homo sapiens GN=LMAN1 PE=1 SV=... [more]
LMAN1_MOUSE3.902e-4839.50Protein ERGIC-53 OS=Mus musculus GN=Lman1 PE=2 SV=... [more]
LMAN1_CERAE3.902e-4839.08Protein ERGIC-53 OS=Cercopithecus aethiops GN=LMAN... [more]
LMAN2_HUMAN1.876e-4237.90Vesicular integral-membrane protein VIP36 OS=Homo ... [more]
LMAN2_CANFA3.199e-4238.81Vesicular integral-membrane protein VIP36 OS=Canis... [more]
LMAN2_MOUSE4.178e-4238.81Vesicular integral-membrane protein VIP36 OS=Mus m... [more]
LMA2L_PONAB6.244e-3835.60VIP36-like protein OS=Pongo abelii GN=LMAN2L PE=3 ... [more]
LMA2L_HUMAN6.244e-3835.60VIP36-like protein OS=Homo sapiens GN=LMAN2L PE=1 ... [more]
LMA2L_BOVIN6.903e-3734.80VIP36-like protein OS=Bos taurus GN=LMAN2L PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AH06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878541 ID=FC878541; Name=FC878541; organism=Citrus clementina; type=EST; length=824bp
CAAGATGAGGGGAGCACTACTCGCCTTCCTTATCCTGGCCCCTTCACTTT
TTTTGGCGTTCAATTTGTTCGGTAGTGACACAGACCCAATCTTTCAGGTC
GATGAGCGTTTTGAGCGAAGAAAACAGCTCGTACACTCTTTTAAGAACCC
CTTCTATTTAGTGAGAGGAACAATATCTTTCTGGGCATCCTCTGGGAGCA
CTGTCATCACCAATGACTACGTCAGATTGACCCCTGCTGAGAAGAGCCGT
GCCGGTACCATCTGGAACACTAAGCCGACCACCTTCCACAACTGGGAAGT
GGAAATGAGCTTTAAAGTTGGCTCCACCTCTGCCCTTGGTGCCGATGGAT
TTGCCATGTGGTACACCAAAGAGTCCAGAAAGGAGGGACCCATATTTGGT
AATCAAGATCAGTGGGATGGTCTGGGTGTGGTATTTGACACTTTTGATAA
TGACGGCTCGAGTGACAATCCATCCATCAATGTATTTCGCAACGACGGCT
CGTGGTCTTATAATTCTGGACAAGACGGCAAGCACCAGTCTCTCGGCCAA
TGCCGCCTCTACTATAGAAATTACGAGACACAGATCAAGATGACCTACAT
CGACTCTAGACTTCAGATCTTGACCAAGTTACAAAATCAGAATGACTGGA
GCGTCTGTACTACCGTATCCGCTAACCTACCCTCTGGTTACTACTTTGGT
CTCACCGCCGCCACCGGCGGTCTGGTCGACAACCATGACGTGTACAAGTT
TGAGGTGACGAGGCTGGGTGAGCAGGGGAGGAGGGAGGATACCCCCAACG
CCGACGGAGGAAGACCACCCGTGT
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