FC878552

Overview
NameFC878552
Unique NameFC878552
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length868
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878552 vs. ExPASy Swiss-Prot
Match: FBK9_ARATH (F-box/kelch-repeat protein At1g23390 OS=Arabidopsis thaliana GN=At1g23390 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 9.058e-67
Identity = 136/274 (49.64%), Postives = 182/274 (66.42%), Query Frame = 1
Query:   34 GDSGSNTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLHTQSQRTMAPYL--TTAHAYDARSHVWIEIKN-NQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKIVVAGGACDFEDDPLAVEMYSVDT--RTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGVTVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQV 840
            GD G     S + GDILE+ILS +PL+DL SAC VS+SWNRAVF SLRR+ K  PWL ++  +QR   PY   T A AYD +S  WIE+   + P     + RSSHSTLLY LSP++ SFS D  HL W HV  PRVWR DP+VA+VG  +++AGG CDFE+D  AVE++ +++    WE C+SMP  L +SA+STWLSVAV+S ++YVTEK SGVT SF+P T+ W+    L     E  ++   I F+ +RLI  G+ G+  +   +++W+V
Sbjct:   11 GDFGEE--ESSIDGDILESILSYLPLLDLDSACQVSKSWNRAVFYSLRRL-KTMPWLFVY--NQRNSPPYTMATMAMAYDPKSEAWIELNTASSPVEHVSVARSSHSTLLYALSPARFSFSTDAFHLTWQHVAPPRVWRIDPIVAVVGRSLIIAGGVCDFEEDRFAVELFDIESGDGAWERCESMPDFLYESASSTWLSVAVSSEKMYVTEKRSGVTCSFNPVTRSWTKLLDL--CPGECSLYSRSIGFSVNRLIMAGIIGDEYNPTGIELWEV 277          
BLAST of FC878552 vs. ExPASy Swiss-Prot
Match: FBK69_ARATH (F-box/kelch-repeat protein At3g24760 OS=Arabidopsis thaliana GN=At3g24760 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.836e-13
Identity = 75/293 (25.60%), Postives = 128/293 (43.69%), Query Frame = 1
Query:   28 PEGDSGSNTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFS---SLRRVNKIKPWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDP-LHLAWHHVDAPRVWRTDPVVALV-----GDKIVVAGGACDFE-----DDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGVTVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLE 864
            PE +S +  N +I   D+ E+IL  +P+  L     VS+ W   + S   S        PWL L        + +   + A+D  S+ W+ +  +  SS D L+ S+    L+T +P    FSF P L   W      R  R +P++ +        K+++ GG+         ++ LAV++Y     +WE+C  +PA  +       L+ A+  R+ YV + YS    SF   +  WS    L+       + ++ +   N  L+  G+ G      S  +W  +I+ GS+E
Sbjct:    6 PEIESSTFNNLNI---DVTESILYHLPIPSLVRFTLVSKQWRSLITSLPPSPSPSPSSPPWLFLF--GIHNTSSFHNQSFAFDPLSNTWLRLPPSSSSS-DHLVGSNR--FLFTTAPR---FSFSPILKPNWRFTSPVRFPRINPLLTVFTTLSNSSKLILVGGSSRIGGLVDIEERLAVQIYDPVLDSWELCSPLPADFRSGQDHQTLTSALFKRRFYVFDNYSCFISSFCLDSYTWSDVQTLK----PPGLSFAYLNSCNGMLVLGGMCG-----FSFNLW--SIEEGSME 276          
The following BLAST results are available for this feature:
BLAST of FC878552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FBK9_ARATH9.058e-6749.64F-box/kelch-repeat protein At1g23390 OS=Arabidopsi... [more]
FBK69_ARATH9.836e-1325.60F-box/kelch-repeat protein At3g24760 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA13DF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA13DF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878552 ID=FC878552; Name=FC878552; organism=Citrus clementina; type=EST; length=868bp
TCGAAAATGGATAAACAAGCAGCGGCCCCAGAAGGTGATAGTGGCAGCAA
TACTAATAATAGTATTGTCCATGGAGACATCTTAGAGGCCATACTGTCGC
AGGTGCCACTGATCGACCTCGCCTCTGCTTGTTACGTGTCTAGATCATGG
AACCGCGCCGTCTTCTCTTCTCTCCGTCGCGTCAACAAAATCAAGCCTTG
GCTGCTGCTGCATACGCAGTCGCAGAGAACTATGGCCCCCTACCTCACAA
CCGCGCACGCTTACGATGCCCGCTCCCACGTGTGGATCGAAATCAAGAAC
AATCAACCCTCGTCCTTCGACTTCCTCCTCCGCTCCTCCCATTCCACGCT
TCTCTACACCCTCTCGCCTTCCAAGCTCTCCTTCTCCTTTGACCCCCTCC
ATCTCGCCTGGCACCACGTGGACGCCCCTCGCGTGTGGAGGACCGACCCC
GTTGTCGCCTTGGTCGGAGACAAAATAGTCGTCGCCGGCGGGGCCTGCGA
CTTCGAAGACGACCCGCTGGCCGTGGAGATGTACAGCGTCGACACTCGCA
CGTGGGAAATCTGCCAAAGCATGCCAGCCGTTCTCAAAGACTCAGCTGCC
TCAACTTGGCTGTCGGTTGCGGTAAATTCTCGTCAACTTTACGTGACTGA
GAAGTACTCGGGCGTTACGGTCTCATTCGACCCCAGTACTAAGGGCTGGT
CCGGACCGTTCCATTTACGTCAATTTGATCACGAGAAGAAGGTATTTTAT
TCCGTGATCACGTTTGCAAACGACCGTTTGATTGCGGTGGGGCTCACTGG
GGAAGCTGAGGACGTCAAGAGTTTAAAGATATGGCAGGTAAATATAAAAG
GGGGGTCGTTGGAAGAGT
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