FC878554

Overview
NameFC878554
Unique NameFC878554
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878554 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 2 
Query:  104 RKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDW 223
            RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW
Sbjct:   61 RKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDW 99
The following BLAST results are available for this feature:
BLAST of FC878554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN2.435e-1175.00Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ12YF05RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878554 ID=FC878554; Name=FC878554; organism=Citrus clementina; type=EST; length=739bp
TGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAG
CGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCGACGACTCCGCTGTCG
GCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCT
TGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACAAGCCCACACATCCTA
ACTCTCCCACTGTTTATGACTGGTAAGTACGTGCGTGTGTCCTCACTCAC
TCACTCGCTCGCTCGCTCGCTCTTCACTTGCATAGATGCTGCATGCATGT
TCTAACTTATTATTCTTTCTTTAGACTTTTATCAGTTGAACGCAAAGGCA
ACTTGTACTATATCTATATATGTTTAATCATGTTCGGTTGCTGATAAATA
TATATATATTTTTTAATTTGTTCTCTGTTTCTCTCCCTTTTTTTTTTTTA
ATAACTGAATTAGTTCCCCGATCGGAAAAAAAACCGCAGCTTATTATATT
CATGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTTTTAAAAAGAAAAAT
GATGAAACCAAATCAATGGAGCAACAACTCAAACATCTCTGTTTTTGTTT
TGTCGTTCTTACTGGCTTCTCTCANCAACCAAATAAAGGCTAAGAGGAAG
GAGGAAAACGTGGCACTCTGTCTCATGGGCGCGTTGAAATAGATCTTGTC
TTATTCAGTAATGATCACTCAATTCACACTCTTTTGTGA
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