FC878593

Overview
NameFC878593
Unique NameFC878593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878593 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.655e-34
Identity = 90/241 (37.34%), Postives = 123/241 (51.04%), Query Frame = 2
Query:  176 VTCALAPDMGVTSRDIVIDKFTNIWALFYVPILCQSTK---------------LPLLVYFHGGGFCVGSAAWSCYHEFLATLAKKAGCIIMSVNYRLAPENPLPAAYEDGFTSLMWLKQQATSSCGGSVDWL-SRQCNFSSIFLAGDSAGANIAHNVALRLGNSNNKVATLKPLTFKGTILIQPFFGGEARTNSEKYLAQPPRSALSLAASDTYWRLALPRGSNRDHPWSNPMSKGSTELE 850
            VT    P  GV S D++ID+  N+ +  Y P      +               +P++++FHGG F   SA  + Y      L     C+++SVNYR APENP P AY+DG+ +L W+  ++         WL S++ +   IFLAGDS+G NIAHNVALR G S   V         G IL+ P FGG  RT SEK L    +  +++   D YW+  LP G +R+HP  NP S     LE
Sbjct:   53 VTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS---------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVL--------GNILLNPMFGGNERTESEKSL--DGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLE 274          
BLAST of FC878593 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.217e-31
Identity = 87/233 (37.34%), Postives = 118/233 (50.64%), Query Frame = 2
Query:  194 PDMGVTSRDIVIDKFTNIWALFYVPILCQSTK-------------LPLLVYFHGGGFCVGSAAWSCYHEFLATLAKKAGCIIMSVNYRLAPENPLPAAYEDGFTSLMWLKQQATSSCGGSVDWL-SRQCNFSSIFLAGDSAGANIAHNVALRLGNSNNKVATLKPLTFKGTILIQPFFGGEARTNSEKYLAQPPRSALSLAASDTYWRLALPRGSNRDHPWSNPMSKGSTELE 850
            P  GV S D++ID+ TN+ +  Y P    ++              +P++V+FHGG F   SA  + Y      L    G +++SVNYR APEN  P AY+DG+  L W+          S  WL S++ +   IFLAGDS+G NI HNVA+R   S   V         G IL+ P FGG  RT SEK L    +  +++   D YWR  LP G +R+HP  +P    S  LE
Sbjct:   59 PVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWV---------NSSSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRIDVL--------GNILLNPMFGGTERTESEKRL--DGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLE 272          
BLAST of FC878593 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.217e-29
Identity = 74/188 (39.36%), Postives = 104/188 (55.32%), Query Frame = 2
Query:  290 LPLLVYFHGGGFCVGSAAWSCYHEFLATLAKKAGCIIMSVNYRLAPENPLPAAYEDGFTSLMWLKQQATSSCGGSVDWL-SRQCNFSSIFLAGDSAGANIAHNVALRLGNSNNKVATLKPLTFKGTILIQPFFGGEARTNSEKYLAQPPRSALSLAASDTYWRLALPRGSNRDHPWSNPMSKGSTELE 850
            +P+L++FHGG F   SA  + Y  F   L    G +++SV+YR +PE+  P AY+DG+ +L W+K +          WL S + +   ++LAGDS+G NIAHNVA+R  N   KV         G IL+ P FGG+ RT SEK L    +  +++   D YWR  LP G +RDHP  NP       L+
Sbjct:  106 VPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV---------WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNEGVKVL--------GNILLHPMFGGQERTQSEKTL--DGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLK 274          
BLAST of FC878593 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.038e-29
Identity = 75/202 (37.13%), Postives = 108/202 (53.47%), Query Frame = 2
Query:  293 PLLVYFHGGGFCVGSAAWSCYHEFLATLAKKAGCIIMSVNYRLAPENPLPAAYEDGFTSLMWLKQQATSSCGGSVDWLSRQCNFSSIFLAGDSAGANIAHNVALRLGNSNNKVATLKPLTFKGTILIQPFFGGEARTNSEKYLAQPPRSALSLAASDTYWRLALPRGSNRDHPWSNPMSKGSTELEQYCGLLPFA-TLVCIS 895
            P++++FHGG F   SA+ + Y        K +  +++SVNYR APE+  P AY+DG+T+L W+  Q     GG           + +FL+GDS+G NIAH+VA+R  +   KV         G IL+   FGG  RT SE+ L    +  ++L   D YW+  LP  ++RDHP  NP       L    G LPFA +L+ +S
Sbjct:  114 PVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQ--------ARVFLSGDSSGGNIAHHVAVRAADEGVKVC--------GNILLNAMFGGTERTESERRL--DGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRL----GGLPFAKSLIIVS 293          
BLAST of FC878593 vs. ExPASy Swiss-Prot
Match: AAAD_HUMAN (Arylacetamide deacetylase OS=Homo sapiens GN=AADAC PE=1 SV=4)

HSP 1 Score: 77.0258 bits (188), Expect = 1.596e-13
Identity = 70/241 (29.05%), Postives = 105/241 (43.57%), Query Frame = 2
Query:  233 KFTNIWALFYVPILCQSTKLPLLVYFHGGGFCVGSAAWSCYHEFLATLAKKAGCIIMSVNYRLAPENPLPAAYEDGFTSLMW-LKQQATSSCGGSVDWLSRQCNFSSIFLAGDSAGANIA----------HNVALRLGNSNNKVATLKPL-------------TFKGTILIQPFFGGEARTNSEKYLAQPPRSALSLAASDTY----WRLALPRGSNRDHPWSNPMSKGSTEL-EQYCGLL 868
            KF NI    YVP          L Y HGGG+CVGSAA S Y       A +   +++S NYRLAP+   P  +ED + +L W L+++  +  G          N   I ++GDSAG N+A           +V ++L   +     L+PL              F    L+  F+     T+     A   R  + + +S  +    W   LP    + H ++NP + GS+EL ++Y G L
Sbjct:   85 KFNNILVRVYVPKRKSEALRRGLFYIHGGGWCVGSAALSGYDLLSRWTADRLDAVVVSTNYRLAPKYHFPIQFEDVYNALRWFLRKKVLAKYG---------VNPERIGISGDSAGGNLAAAVTQQLLDDPDVKIKLKIQSLIYPALQPLDVDLPSYQENSNFLFLSKSLMVRFWSEYFTTDRSLEKAMLSRQHVPVESSHLFKFINWSSLLPERFIKGHVYNNP-NYGSSELAKKYPGFL 315          
BLAST of FC878593 vs. ExPASy Swiss-Prot
Match: AAAD_RABIT (Arylacetamide deacetylase OS=Oryctolagus cuniculus GN=AADAC PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.067e-13
Identity = 47/126 (37.30%), Postives = 63/126 (50.00%), Query Frame = 2
Query:  236 FTNIWALFYVPILCQSTKLPLLVYFHGGGFCVGSAAWSCYHEFLATLAKKAGCIIMSVNYRLAPENPLPAAYEDGFTSLMW-LKQQATSSCGGSVDWLSRQCNFSSIFLAGDSAGANIAHNVALRL 610
            F N+    YVP     T    L Y HGGG+CVGSAA S Y       A +   +++S NYRLAPE   P  +ED + +L W L+Q      G   +          + ++GDSAG N+A  VA +L
Sbjct:   85 FNNVPVRVYVPKRKSKTLRRGLFYIHGGGWCVGSAALSGYDLLSRRTADRLDVVVVSTNYRLAPEYHFPIQFEDVYDALKWFLRQDVLEKYGVDPE---------RVGVSGDSAGGNLAAAVAQQL 201          
BLAST of FC878593 vs. ExPASy Swiss-Prot
Match: LIP2_MORS1 (Lipase 2 OS=Moraxella sp. (strain TA144) GN=lip2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.011e-12
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  278 QSTKLPLLVYFHGGGFCVGSAAWSCYHEFLATLAKKAGCIIMSVNYRLAPENPLPAAYEDGFTSLMWLKQQATSSCGGSVDWLSRQCNFSSIFLAGDSAGANIAHNVA 601
            +ST    +++FHGGGFC+G      +HEF  T+  + G  ++SV+YR+APE P P A +D   +  WL +  + S G S          S I L+GDSAG  +A  VA
Sbjct:  154 KSTDEAAMLFFHGGGFCIGDI--DTHHEFCHTVCAQTGWAVVSVDYRMAPEYPAPTALKDCLAAYAWLAEH-SQSLGASP---------SRIVLSGDSAGGCLAALVA 249          
BLAST of FC878593 vs. ExPASy Swiss-Prot
Match: YFZ3_SCHPO (AB hydrolase superfamily protein C1039.03 OS=Schizosaccharomyces pombe GN=SPAC1039.03 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.549e-11
Identity = 54/195 (27.69%), Postives = 93/195 (47.69%), Query Frame = 2
Query:  293 PLLVYFHGGGFCVGSAAWSCYHEFLATLAKKAGCIIMSVNYRLAPENPLPAAYEDGFTSLMWLKQQATSSCGGSVDWLSRQCNFSSIFLAGDSAGANIAHNVALRLGNSNNKVATLKPLTFKGTILIQPFFGGEARTNSEK---YLAQPPRSALSLAASDTYWRLALPRGSNRDHPWSNPMSKGSTELEQYCGLL 868
            P  ++FHGGG+ +G+   +  + F   + ++A C++++V+YRLAPE+P PA  +DG+ +L++        C  + D L    N + I + G SAG NIA  ++ ++  S    A   PL  +  +L+ P     A   + K        P+  L  A    Y R  LP   +  +P ++P     +  +  C  L
Sbjct:  101 PCFLWFHGGGWVLGNI--NTENSFATHMCEQAKCVVVNVDYRLAPEDPFPACIDDGWEALLY--------CYENADTLG--INPNKIAVGGSSAGGNIAAVLSHKVAAS---PANFPPLVLQ--LLVVPVCDNTANAKTHKSWELFENTPQ--LPAAKMMWYRRHYLPNEKDWSNPEASPFFYPDSSFKNVCPAL 276          
The following BLAST results are available for this feature:
BLAST of FC878593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GI1L1_ARATH3.655e-3437.34Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L3_ARATH2.217e-3137.34Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH1.217e-2939.36Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ6.038e-2937.13Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
AAAD_HUMAN1.596e-1329.05Arylacetamide deacetylase OS=Homo sapiens GN=AADAC... [more]
AAAD_RABIT6.067e-1337.30Arylacetamide deacetylase OS=Oryctolagus cuniculus... [more]
LIP2_MORS13.011e-1238.89Lipase 2 OS=Moraxella sp. (strain TA144) GN=lip2 P... [more]
YFZ3_SCHPO2.549e-1127.69AB hydrolase superfamily protein C1039.03 OS=Schiz... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA8CC08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA8CC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878593 ID=FC878593; Name=FC878593; organism=Citrus clementina; type=EST; length=895bp
CTCATTCTCTTTCAGTGAGAAAAAAAGAAGAATGGCAGCCACTATAGATC
CAAGTTTAAGCGGCTTAGAGATGCATAAAAATCTCAATCCACAGGGAGCT
GTTATTGATGAAATTGAAGGGCTCATTAGAGTTTACAAAGATGGACATGT
GGAGAGACTCCCTATTGTTCCATGTGTCACGTGTGCTTTGGCTCCGGACA
TGGGCGTGACATCAAGAGACATAGTCATTGACAAATTCACAAACATTTGG
GCACTTTTTTATGTCCCAATCCTATGCCAAAGTACTAAACTTCCTTTGCT
TGTCTACTTCCACGGAGGAGGATTTTGCGTCGGCTCGGCTGCTTGGAGTT
GCTACCACGAGTTCCTAGCAACGCTAGCGAAGAAAGCCGGTTGCATAATC
ATGTCTGTCAATTACCGTTTAGCCCCTGAAAATCCTCTGCCAGCTGCTTA
TGAAGATGGGTTTACTTCCCTAATGTGGCTTAAACAACAGGCAACGTCAT
CATGTGGGGGTAGTGTTGACTGGTTGTCAAGGCAATGCAATTTCAGTAGC
ATATTCTTAGCTGGTGATAGTGCTGGTGCCAATATAGCCCACAATGTAGC
CTTAAGGCTTGGTAATTCTAACAATAAAGTTGCAACCTTGAAGCCATTAA
CTTTCAAGGGTACGATTTTAATTCAACCATTTTTCGGAGGAGAAGCACGT
ACAAATTCTGAGAAGTATTTGGCACAGCCACCACGGTCGGCGCTGAGCTT
GGCCGCCTCGGATACTTACTGGCGATTAGCCTTGCCTCGTGGATCAAACC
GTGATCATCCTTGGAGCAATCCGATGTCCAAGGGCTCAACAGAGTTGGAG
CAATATTGCGGGCTTTTGCCCTTTGCCACATTGGTGTGCATTTCT
back to top