FC878620

Overview
NameFC878620
Unique NameFC878620
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length847
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878620 vs. ExPASy Swiss-Prot
Match: GYAR_THELI (Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18
Identity = 60/168 (35.71%), Postives = 91/168 (54.17%), Query Frame = 2
Query:  272 KFKFLKAWESP-LPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHIDIAECRRRGITVANTGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP 766
            KF  ++ W+ P  P    L    + V+A+++     V  E L   P ++++   + G ++IDI E  +RGI V NT  V ++  ADLA  LL+ + R I  +D FV+  +W   +++  G    + +G  L GK +GIVG G IG  +AKR   FG  I Y SRT+KP
Sbjct:   21 KFYEIELWKDPKAPPRGVLLEKVREVDALVTLVTDKVDKELLENAPKLKIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEW---KKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKRAKGFGMKIIYYSRTRKP 185          
BLAST of FC878620 vs. ExPASy Swiss-Prot
Match: GYAR_PYRHO (Glyoxylate reductase OS=Pyrococcus horikoshii GN=gyaR PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 60/189 (31.75%), Postives = 96/189 (50.79%), Query Frame = 2
Query:  296 ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHIDIAECRRRGITVANTGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCDILIICCGLT 847
            E  +P +  LK   + V+A+++     +  E     P +R+V   + G ++IDI E  +RGI V NT +V ++  ADLA  LL+   R++   DRFV+  +W +   A     +   +G  + GK +GI+GLG IG  +AKR   F   I Y SRT+K  V       +  + +L    D +++   LT
Sbjct:   31 EKEIPREILLKK-VKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWF---LGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLT 215          
BLAST of FC878620 vs. ExPASy Swiss-Prot
Match: GYAR_THEON (Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.316e-17
Identity = 56/194 (28.87%), Postives = 98/194 (50.52%), Query Frame = 2
Query:  284 LKAWESPLPLD-QFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHIDIAECRRRGITVANTGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCDILIICCGLT 847
            ++ WE    +  + L    + V+A+++     + AE     P +++V   + G ++IDI E  + G+ + NT +V +   AD+A  LL+   R +  +D+FV+  +W +   A     +   +G  + G+ +GIVG G IG  +A+R   FG  I YNSRT+KP V       +  + EL    D +++   LT
Sbjct:   25 VEVWEDEHEISREVLLEKVRDVDALVTMLSERIDAEVFDAAPRLKIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMF---LGYDVYGRTIGIVGFGRIGQAIARRAKGFGMRILYNSRTRKPEVEKELGAEFMPLDELLKESDFVVLVVPLT 215          
BLAST of FC878620 vs. ExPASy Swiss-Prot
Match: GYAR_PYRFU (Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.316e-17
Identity = 60/195 (30.77%), Postives = 97/195 (49.74%), Query Frame = 2
Query:  284 LKAWESP--LPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHIDIAECRRRGITVANTGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCDILIICCGLT 847
            ++ WE    +P ++ L+   + V+A+++     +  E     P +R+V   + G ++ID+ E  RRGI V NT +V +   AD A  LL+   R++   D+FV+  +W R   A     +   +G +L GK +GIVG G IG  +A+R   F   I Y SRT+K          Y  + E+    D +I+   LT
Sbjct:   25 VEVWEEEREIPREKLLEK-VKDVDALVTMLSERIDQEVFENAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWF---LGYELYGKTIGIVGFGRIGQAIARRAKGFNMRILYYSRTRKSQAEKELGAEYRPLEEVLKESDFVILAVPLT 215          
BLAST of FC878620 vs. ExPASy Swiss-Prot
Match: GYAR_PYRAB (Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.249e-17
Identity = 56/193 (29.02%), Postives = 94/193 (48.70%), Query Frame = 2
Query:  284 LKAWESPLPLD-QFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHIDIAECRRRGITVANTGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCDILIICCGL 844
            ++ WE    +  + L    + V+A+++     +  E     P +R+V   + G ++ID+ E  +RGI V NT  V ++  ADLA  LL+   R++   D+F +  +W +   A     +   +G  + GK +GI+G G IG  +AKR   F   I Y SRT+KP V       +  + EL    D +++   L
Sbjct:   26 VEVWEDEREIPREILLEKVKDVDALVTMLSERIDREVFERAPRLRIVANYAVGYDNIDVEEATKRGIYVTNTPGVLTDATADLAFALLLATARHLVKGDKFTRSGEWKKRGVAWHPKWF---LGYDVYGKTIGIIGFGRIGQAIAKRARGFDMRILYYSRTRKPEVEKELNAEFKPLDELLRESDFVVLAVPL 215          
BLAST of FC878620 vs. ExPASy Swiss-Prot
Match: GYAR_PYRKO (Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.407e-16
Identity = 58/189 (30.69%), Postives = 95/189 (50.26%), Query Frame = 2
Query:  296 ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHIDIAECRRRGITVANTGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCDILIICCGLT 847
            E  +P +  LK   + V+A+++     + +E     P +R+V   + G ++ID+ E  RRGI V NT +V ++  AD A  LL+   R +  +D F +  +W R   A     +   +G  + GK +GIVG G IG  VA+R   FG  I Y SR++KP         + ++ +L    D +++   LT
Sbjct:   31 EREIPREVLLKK-VRDVDALVTMLSERIDSEVFDAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHPRWF---LGYDVYGKTIGIVGFGRIGQAVARRARGFGMRILYYSRSRKPEAEKELGAEFRSLEDLLRESDFVVLAVPLT 215          
BLAST of FC878620 vs. ExPASy Swiss-Prot
Match: GYAR_THEGJ (Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.347e-16
Identity = 57/189 (30.16%), Postives = 92/189 (48.68%), Query Frame = 2
Query:  296 ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHIDIAECRRRGITVANTGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCDILIICCGLT 847
            E  +P +  L+   + V+A+++     +  E     P +R+V   + G +++D+ E  RRGI V NT +V +   AD A  LL+   R +  +D F +  +W R   A     +   +G  + GK +GI+G G IG  VA+R   FG  I Y SRT+KP         +  + EL    D +++   LT
Sbjct:   31 EREIPREVLLEK-VRDVDALVTMLSERIDGEVFDNAPRLRIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLATARRLIEADSFTRSGEWKRKGIAWHPLMF---LGHDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEEELKAEFKPLEELLKESDFVVLAVPLT 215          
BLAST of FC878620 vs. ExPASy Swiss-Prot
Match: GYAR_THEPD (Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.191e-15
Identity = 52/148 (35.14%), Postives = 82/148 (55.41%), Query Frame = 2
Query:  308 PLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHIDIAECRRRGITVANTGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISY 745
            P  + L  + +  +A+L      + AE +   P ++++ T S G +HIDI E  +RGI V +T  V ++ VA+  VGL++ + R I  +D+ ++  QW +P      + Y L  G +L GK +G+VGLG IG   AKRL +F   I Y
Sbjct:   36 PSREELLRNIRDKDALLCLLTDKIDAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILAVTRRIVEADKIIRTGQWDKP-----WNPYFL-TGPELKGKTIGLVGLGRIGVATAKRLSSFDVKILY 177          
BLAST of FC878620 vs. ExPASy Swiss-Prot
Match: GYAR_AERPE (Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.721e-15
Identity = 61/200 (30.50%), Postives = 102/200 (51.00%), Query Frame = 2
Query:  269 NKFKFLKAWES--PLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHIDIAECRRRGITVANTGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCDILIICCGLT 847
            +K+  ++ W+   P P +  L + A+  +A+ +     +  + L   P +R+V   + G ++ID+    R GI V NT  V +E  A+    L++   R +  +D FV+  +W R R    G    + +G +L GK +GI+G+G IGS VA+   AFG  I Y+SR++K  +       Y ++ +L    DIL I   LT
Sbjct:   21 SKYYDVEVWDKYQPPPYETLL-SKAREADALYTLLTDRIDCDLLSQAPRLRIVAQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRWGEWWRLRT---GWHPMMMLGVELRGKTLGILGMGRIGSRVAEIGKAFGMRIIYHSRSRKREIEKELGAEYRSLEDLLRESDILSIHLPLT 216          
BLAST of FC878620 vs. ExPASy Swiss-Prot
Match: GYAR_KORCO (Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.832e-14
Identity = 51/155 (32.90%), Postives = 78/155 (50.32%), Query Frame = 2
Query:  296 ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHIDIAECRRRGITVANTGNVFSEDVADLAVGLLIDLLRNISASDRFVKQ--W---LRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISY 745
            E+P P  + +    +  +A++S    P+ AE     P +R+V   + G ++ID+ E  +RGI V NT  V +E  AD A  LL+   R +  +DR+V++  W     P      D Y         G+ +GIVG+G IG+ VA+R   FG  I Y
Sbjct:   31 EAP-PSKKVIIERVKDCDALVSLLTDPIDAEVFEAAPKLRIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFALLMAAARRVVEADRYVREGKWKVAWHPMMMLGYDVY---------GRTLGIVGMGRIGAAVARRAKGFGMRILY 175          
The following BLAST results are available for this feature:
BLAST of FC878620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
GYAR_THELI1.503e-1835.71Glyoxylate reductase OS=Thermococcus litoralis GN=... [more]
GYAR_PYRHO7.461e-1831.75Glyoxylate reductase OS=Pyrococcus horikoshii GN=g... [more]
GYAR_THEON6.316e-1728.87Glyoxylate reductase OS=Thermococcus onnurineus (s... [more]
GYAR_PYRFU6.316e-1730.77Glyoxylate reductase OS=Pyrococcus furiosus GN=gya... [more]
GYAR_PYRAB8.249e-1729.02Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR ... [more]
GYAR_PYRKO1.407e-1630.69Glyoxylate reductase OS=Pyrococcus kodakaraensis G... [more]
GYAR_THEGJ5.347e-1630.16Glyoxylate reductase OS=Thermococcus gammatolerans... [more]
GYAR_THEPD1.191e-1535.14Glyoxylate reductase OS=Thermofilum pendens (strai... [more]
GYAR_AERPE7.721e-1530.50Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR P... [more]
GYAR_KORCO3.832e-1432.90Glyoxylate reductase OS=Korarchaeum cryptofilum (s... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA3CB02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA3CB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878620 ID=FC878620; Name=FC878620; organism=Citrus clementina; type=EST; length=847bp
AACTAGCAAGTGTTTGAAACGGAGCCGTTTCGAGGAGCACAATGAAGGAG
GGGCAAAGTAAGCGTCTGAGAAATCACAAGATTTTTCCTTTTTTAAAAAA
AAAAAAAAAATTCTTAATTAATTAAGTTGACCAGTCAAGTGAGTGGAACC
GACGATGGAAGCATGTCATGGGCATGGCAAAGAAAAAGAATCCCAAGACC
TCCCGAGAGTACTCCTGTTTAAGCCGCCACCGGACTTTCACCTCTTCGGA
GACGAATGCTTTTCCTCAAACAAGTTCAAGTTCTTGAAGGCGTGGGAATC
TCCTCTCCCACTTGACCAATTCTTGAAAACACATGCACAGTCAGTCGAAG
CCATTCTCTCATCGGGTGGCGCCCCGGTGACAGCCGAGACCTTGCGGCTG
ATGCCGGCCGTTCGATTGGTGATGACCACGAGCGCCGGACTCAACCACAT
CGACATCGCCGAGTGCCGACGCCGCGGCATCACTGTAGCTAATACTGGAA
ACGTTTTCTCCGAAGATGTTGCTGATTTGGCCGTGGGGTTGCTTATTGAT
TTGTTAAGGAACATTTCTGCTTCTGATCGGTTTGTTAAACAATGGCTTCG
GCCTCGTCAAGCTGCTGAAGGGGACTGCTATTCTCTCGGCATCGGCAGTA
AGCTGGGAGGTAAGCGAGTTGGGATTGTTGGATTGGGAAGCATTGGCTCA
TTAGTTGCTAAAAGACTAGATGCCTTTGGATGCTCCATATCATACAACTC
AAGGACGAAGAAACCATCTGTCTCATACCCTTTCTATTCAAATGTCTGTG
AACTTGCAGCTAACTGCGATATCCTCATTATTTGCTGTGGATTAACT
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