FC878625

Overview
NameFC878625
Unique NameFC878625
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length839
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC878625 vs. ExPASy Swiss-Prot
Match: PPR76_ARATH (Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.242e-73
Identity = 142/249 (57.03%), Postives = 176/249 (70.68%), Query Frame = 2 
Query:   53 RRRRYNNIMCVT-VRRRHYATKYIAKITSTSPTGRSVTAEVTPPQPIPSDTRGYPIPRRHVICKATNLLL---QXXXXXXXXXXXXXXXXXXXXXXXXXEILKSLNCPRLAYNFFHFCPSFSPAFHHDAFTYNRLILVLSKSSLPDRFDLVGTLLDDMERSMTRGTISTVNILIGFFGCSNDLKRCIGLVKKWDLKMNCYTYKCLLQAHLRSRDVLEAFRVYGEMRAKGYKLDIFGYNMLLDALAKNEK 787
            RRR +N++  +T   RRHYATKY+AK+TS+SP+GRS++AEV+ P P+P+D RGYP+PRRH+IC+ATNL+                              EILKSLN P LA  FF   PS  P   +D F YNR+IL+LS+S+LPDRFD V ++LD M +S   G ISTVNILIGFFG + DL+ C+ LVKKWDLKMN +TYKCLLQA+LRSRD  +AF VY E+R  G+KLDIF YNMLLDALAK+EK
Sbjct:    5 RRRFFNSVNTITRPNRRHYATKYVAKVTSSSPSGRSLSAEVSLPNPLPADVRGYPLPRRHLICRATNLITGASNLSDAFSDLSDYLSSLSLSLTPDEASEILKSLNSPLLAVEFFKLVPSLCPYSQNDPFLYNRIILILSRSNLPDRFDRVRSILDSMVKSNVHGNISTVNILIGFFGNTEDLQMCLRLVKKWDLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKDEK 253
The following BLAST results are available for this feature:
BLAST of FC878625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PPR76_ARATH1.242e-7357.03Pentatricopeptide repeat-containing protein At1g51... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA80CC12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878625 ID=FC878625; Name=FC878625; organism=Citrus clementina; type=EST; length=839bp
AAATAATATTTAGCAAAGTTGAGAGCTGCCACAGCAGCCTGCAGCCATGC
ACCGCCGCCGCCGCTACAACAACATCATGTGCGTCACCGTCAGGCGCCGC
CATTACGCGACTAAGTACATAGCCAAGATCACCTCAACATCCCCTACAGG
TCGTTCCGTCACAGCCGAGGTGACCCCACCGCAGCCAATCCCATCCGACA
CGCGCGGCTACCCTATACCGCGCCGCCACGTCATCTGCAAAGCCACCAAC
CTCCTCCTCCAGTCCCGCCCCTCCGGGTCATCCATCTCCGACTTCTTCTC
CTCCCTCTCGCCGCCCCTCACTCCCTCCGAGGCCTCCGAGATCCTCAAAT
CCCTAAACTGCCCCCGCCTCGCCTACAATTTCTTCCACTTTTGCCCCTCG
TTCTCCCCCGCCTTTCACCACGACGCCTTCACTTACAATCGCCTCATACT
AGTCCTCTCCAAATCCAGCCTTCCGGACAGATTCGACCTCGTCGGCACCC
TCCTCGACGATATGGAGAGGTCCATGACACGTGGTACGATCTCCACCGTC
AATATTCTCATCGGATTCTTCGGCTGTTCCAATGACCTCAAAAGATGTAT
TGGGTTGGTTAAGAAATGGGATTTGAAGATGAACTGCTACACGTACAAGT
GTTTGCTGCAAGCGCACTTGAGGTCACGTGACGTGCTCGAGGCGTTTAGG
GTTTATGGCGAGATGAGAGCGAAAGGGTACAAGTTGGATATCTTTGGCTA
CAATATGTTGCTGGATGCCTTGGCCAAAAATGAAAAGTATTTTGACAGGT
TGATCAAGCTTACAAGGTTTTTTGAGACATGAAGAGAAA
back to top