FC878685

Overview
NameFC878685
Unique NameFC878685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length836
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC878685 vs. ExPASy Swiss-Prot
Match: ATL3G_ARATH (RING-H2 finger protein ATL3G OS=Arabidopsis thaliana GN=ATL3G PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.999e-23
Identity = 67/130 (51.54%), Postives = 76/130 (58.46%), Query Frame = -3 
Query:  289 LKRSYSFGFERSLASERMVTEAVTASPWRYRRGSFWSKRPSPFGSL-TKSRVFSFRHYRGMKSPFLRRRG----FFPLXXXXXXXXXXXXXXXXXXSPMFPXXXXXXXXXXXXRCGDPEALLSPDRFNRR 663
            LKRSYSF  ER   SER+  E  T SPWRYRR S W+KR SPFG+L +KSRVFSFR+YR  KSPF RRR     F+P+                  SPMF             RCGDPEALLSP+R+ RR
Sbjct:  278 LKRSYSFECERESESERVTMEPATVSPWRYRR-STWNKRQSPFGNLISKSRVFSFRYYRSTKSPFFRRRSSAGVFYPISERIPATGSSSRRTKSMTSPMF--FRTAPHSSSRLRCGDPEALLSPERWRRR 404
The following BLAST results are available for this feature:
BLAST of FC878685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATL3G_ARATH1.999e-2351.54RING-H2 finger protein ATL3G OS=Arabidopsis thalia... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA38CH03RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878685 ID=FC878685; Name=FC878685; organism=Citrus clementina; type=EST; length=836bp
CTCAGTGTTTCGACAAATGGCTCATTAAAACATTCACCCGCTCGTCAATT
TTTACATTAAATGCCCTCTCCACCTCCCATTAAATGTTCTCCGCAAATTG
CCAGACTATCTCATTAACTCATTTACTCCATTTTCTCTCGATCCCTCCCC
TCCCCATTTATGATCACCTGACCCCCCCATCATCTCCTCCCCGTCACCGA
TCCATCTCCCACCGTCTACTCTTCACCCCTTCTCAATCTCGTCCATCCAC
GTGTCATATTTTCCCCCAAAAACCTTCGAACTTTTTCACCTTCTGTTGAA
CCTGTCCGGAGATAATAACGCCTCGGGATCCCCACACCGCAGCCGGCTCG
ACGAGAACGCCAACGCCGACGATCTAGGAAACATAGGGCTTGTCATTGAT
TTGCTCCGGCGGGACGAGCCGGAGAATCTCACGCTCGACTCTGATAACGG
GAAAAACCCTCTCCGTCTCAAAAAAGGCGATTTCATTCCTCTGTAGTGTC
TGAACGAGAAGACTCTAGACTTCGTCAACGAGCCAAACGGAGACGGCCGT
TTGCTCCAGAAACTCCCCCTCCTGTACCTCCACGGCGACGCCGTTACCGC
CTCCGTCACCATTCTCTCCGACGCGAGACTCCGCTCGAATCCAAACGAAT
ACGACCGCTTCAACAAAAAATCACGGCCGTTGAACCTCTCCTCCGAGTTG
AAGTTATTGTTGTTAATCGCCACCGCCACGTCATCAACGCACGGCGTGAT
TTCAGAACCGTTCGTGGAAGCGGCCGTCGTCGTCGGCATTTGGATTTCGG
AAAGAGACTCGAGGGACACGGTCACGTGCTGCAGCA
back to top