FC885370

Overview
NameFC885370
Unique NameFC885370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length917
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC885370 vs. ExPASy Swiss-Prot
Match: TTC15_HUMAN (Tetratricopeptide repeat protein 15 OS=Homo sapiens GN=TTC15 PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 4.650e-24
Identity = 87/291 (29.90%), Postives = 139/291 (47.77%), Query Frame = 2
Query:  104 LQDLATRGSWRTIIDNVSRARS--------QSLLTQPHHHLTYLAYNTLALM-KLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEE--------------SVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRHKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMY 907
            L+ L +  +WR  +D   R  +          LLT        L +  LAL+ KL  F  A+ E +   + +     YE YPH+YP R GSMVPFS+R L+A L   L N Q  LDR ++ +  V  K+   L + L E              S++ W+ R   V+  +    L  K+Y +  +  +  I      +P L+S +G I +Q+GD++ A+K F  VE++  +    DGL  ++    +V  + A ++L   ++  A R + E +  D  + VA NN A+CL+Y
Sbjct:  384 LKQLISCRNWRAAVDLCGRLLTAHGQGYGKSGLLTSHTTDSLQLWFVRLALLVKLGLFQNAEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK-VKTVCSKILANLEQGLAEDGGMSSVTQEGRQASIRLWRSRLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQEPQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQK---LDGLQGKI----MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLY 666          
BLAST of FC885370 vs. ExPASy Swiss-Prot
Match: TTC15_MOUSE (Tetratricopeptide repeat protein 15 OS=Mus musculus GN=Ttc15 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.932e-24
Identity = 92/291 (31.62%), Postives = 139/291 (47.77%), Query Frame = 2
Query:  104 LQDLATRGSWRTIIDNVSR---ARSQSLLTQ--PHHHLT---YLAYNTLALM-KLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEE--------------SVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRHKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMY 907
            L+ L +  +WR  +D   R   A  Q       P  H T    L +  LAL+ KL  F  A+ E +   + +     YE YPH+YP R GSMVPFS+R L+A L   L N Q  LDR +  +  V  K+   L + L E              SV+ W+ R   VL  +    L  K+Y +  D     I      +P L+S +G I +Q+GD++ A+K F  VE++  +    DGL  ++    +V  ++A +YL   ++  A + + E +  D  + VA NN A+CL+Y
Sbjct:  446 LKQLISCRNWRAAVDLCGRLLTAHGQGYGKNGLPTSHTTDSLQLWFVRLALLVKLGLFQNAEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHR-VKTVCSKILANLEQGLAEDGGLSSVTQESRQASVQLWRSRLGRVLYSMANCLLLMKDYVLAVDAYLTVIKYYPEQEPQLLSGIGRILLQIGDIKTAEKYFQDVEKVTQK---LDGLQGKI----MVLMNRAFLYLGQNNFAEAHKFFTEILRMDPTNAVANNNAAVCLLY 728          
The following BLAST results are available for this feature:
BLAST of FC885370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TTC15_HUMAN4.650e-2429.90Tetratricopeptide repeat protein 15 OS=Homo sapien... [more]
TTC15_MOUSE7.932e-2431.62Tetratricopeptide repeat protein 15 OS=Mus musculu... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA87CB07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA87CB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC885370 ID=FC885370; Name=FC885370; organism=Citrus clementina; type=EST; length=917bp
CATGACGGAGTCGCCACCCGTCTGTCAAAACCCAAGCCGATTCACGGATC
CGTTAACCAACGAATTCGGATCCTTGAACGACCTCGTACCGGACCTCGCA
TCTCTCCAAGACCTCGCCACGCGCGGCTCCTGGCGCACAATCATCGACAA
TGTCTCACGCGCCCGCTCCCAGTCTCTCCTCACGCAACCCCACCACCACC
TCACTTATCTCGCCTACAACACCCTCGCATTAATGAAACTACGCCGCTTC
GATGAAGCCCAACAAGAGCTCGACTCTCTCGAAGACTTTAACAGCTCCGG
TTACCAATACGAAACATATCCTCATATTTACCCGAACCGGACCGGATCCA
TGGTTCCCTTCTCTCTCCGCTGGCTCTACGCGGTTCTTCCGATTAAGTTA
TCGAACCGGCAAGTGGGTCTGGACCGGTTTTATGAATTGCTTGATTTCGT
GAGAGAAAAGTTGGCACGAAAACTAGCTGAGAAATTGGAAGAATCGGTGA
AATCGTGGAAGAAAAGAGAGATTTTTGTTTTGAATTGTTTGATTGGGTAT
CATTTGAGTAGTAAAGAGTATAATGTTTGTTTTGATTTGATGAATGAATC
GATTGGTCGAGGTAATGGTTTGGACCCGATTTTGGTTTCGAAATTAGGGT
TTATACAGATGCAAGTTGGGGATTTAGAGGGGGCAAAGAAGTCGTTTAAT
CGAGTGGAGGAAATGTTAAACGAGGGGAAATTTGAGGATGGGTTGCTGAG
TGAAGTTGAGTTTAGGAACCTTGTCAGTAGACATAAGGCATTGATTTATT
TGGTGGGGAAAGATTATGTATCTGCGGTGAGAGAGTATGAGGAGTGTATA
GAGAGGGATTATAATGATATTGTGGCGATTAATAATAAGGCGTTGTGTTT
GATGTACTGGAGGGATT
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