FC891077

Overview
NameFC891077
Unique NameFC891077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length265
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC891077 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 5.063e-23
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 3
Query:    3 VVKMVQECYTYVDKTPDEETKIKLIETLCTITDGKIYVEVERARLTHLLAKIREEERNVAEAAKIIQDLQVETYGSMNKIEKVELIL 263
            V KMVQ+C TYV++  D   K++LI+TL  +T+GKIYVE+ERARLT  LA I+E+  +V EAA I+Q+LQVETYGSM K E+VE IL
Sbjct:  101 VAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFIL 187          
BLAST of FC891077 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 6.613e-23
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 3
Query:    3 VVKMVQECYTYVDKTPDEETKIKLIETLCTITDGKIYVEVERARLTHLLAKIREEERNVAEAAKIIQDLQVETYGSMNKIEKVELIL 263
            V KMVQ+C TYV++  D   K++LI+TL  +T+GKIYVE+ERARLT  LA I+E+  +V EAA I+Q+LQVETYGSM K E+VE IL
Sbjct:  101 VAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFIL 187          
BLAST of FC891077 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 6.613e-23
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 3
Query:    3 VVKMVQECYTYVDKTPDEETKIKLIETLCTITDGKIYVEVERARLTHLLAKIREEERNVAEAAKIIQDLQVETYGSMNKIEKVELIL 263
            V KMVQ+C TYV++  D   K++LI+TL  +T+GKIYVE+ERARLT  LA I+E+  +V EAA I+Q+LQVETYGSM K E+VE IL
Sbjct:  101 VAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFIL 187          
BLAST of FC891077 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 6.613e-23
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 3
Query:    3 VVKMVQECYTYVDKTPDEETKIKLIETLCTITDGKIYVEVERARLTHLLAKIREEERNVAEAAKIIQDLQVETYGSMNKIEKVELIL 263
            V KMVQ+C TYV++  D   K++LI+TL  +T+GKIYVE+ERARLT  LA I+E+  +V EAA I+Q+LQVETYGSM K E+VE IL
Sbjct:  101 VAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFIL 187          
BLAST of FC891077 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.084e-21
Identity = 49/84 (58.33%), Postives = 66/84 (78.57%), Query Frame = 3
Query:   12 MVQECYTYVDKTPDEETKIKLIETLCTITDGKIYVEVERARLTHLLAKIREEERNVAEAAKIIQDLQVETYGSMNKIEKVELIL 263
            +VQE   YVD+  D + K++LI+TL TI+DGKI+VE ERARLT  L+KI+E+E ++A AAKI+QDLQVETYG+M K EK+   +
Sbjct:  105 IVQESMVYVDQITDMKQKLELIDTLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVETYGTMEKREKITFFI 188          
BLAST of FC891077 vs. ExPASy Swiss-Prot
Match: RPN5_SCHPO (26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe GN=rpn5a PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.366e-18
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 3
Query:    3 VVKMVQECYTYVDKTPDEETKIKLIETLCTITDGKIYVEVERARLTHLLAKIREEERNVAEAAKIIQDLQVETYGSMNKIEKVELIL 263
            +  +VQ   TY+    D +TKI LIETL TITDGKIYVEVERARLT LL++I+EE+ ++  A +I+ +  VETYGS +  EKV  IL
Sbjct:   89 MTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFIL 175          
BLAST of FC891077 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 5.075e-15
Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 3
Query:   12 MVQECYTYV--DKTPDEETKIKLIETLCTITDGKIYVEVERARLTHLLAKIREEERNVAEAAKIIQDLQVETYGSMNKIEKVELIL 263
            M+Q+   Y+   K+ D  T+I +IET+  +T+ KI+VEVERAR+T  L +I++EE  + EAA I+ +LQVETYGSM   EK++ IL
Sbjct:   96 MIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFIL 181          
The following BLAST results are available for this feature:
BLAST of FC891077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSD12_MOUSE5.063e-2360.9226S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_PONAB6.613e-2360.9226S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_HUMAN6.613e-2360.9226S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_BOVIN6.613e-2360.9226S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_DICDI8.084e-2158.3326S proteasome non-ATPase regulatory subunit 12 OS... [more]
RPN5_SCHPO8.366e-1855.1726S proteasome regulatory subunit rpn5 OS=Schizosa... [more]
RPN5_YEAST5.075e-1548.8426S proteasome regulatory subunit RPN5 OS=Saccharo... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA49DH06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49DH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC891077 ID=FC891077; Name=FC891077; organism=Citrus clementina; type=EST; length=265bp
CCGTTGTGAAGATGGTGCAGGAATGCTACACCTATGTGGACAAGACACCC
GACGAGGAAACAAAGATCAAACTGATTGAGACCCTGTGCACTATAACTGA
CGGTAAGATTTACGTTGAAGTTGAGCGAGCTAGGTTGACCCACCTACTGG
CTAAAATAAGAGAGGAAGAAAGAAATGTTGCTGAGGCTGCCAAGATCATC
CAGGATCTGCAAGTAGAGACCTATGGCTCAATGAACAAAATAGAGAAAGT
GGAACTGATTTTGGA
back to top