FC891077
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC891077 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3) HSP 1 Score: 106.301 bits (264), Expect = 5.063e-23 Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 3 Query: 3 VVKMVQECYTYVDKTPDEETKIKLIETLCTITDGKIYVEVERARLTHLLAKIREEERNVAEAAKIIQDLQVETYGSMNKIEKVELIL 263 V KMVQ+C TYV++ D K++LI+TL +T+GKIYVE+ERARLT LA I+E+ +V EAA I+Q+LQVETYGSM K E+VE IL Sbjct: 101 VAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFIL 187
BLAST of FC891077 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3) HSP 1 Score: 105.916 bits (263), Expect = 6.613e-23 Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 3 Query: 3 VVKMVQECYTYVDKTPDEETKIKLIETLCTITDGKIYVEVERARLTHLLAKIREEERNVAEAAKIIQDLQVETYGSMNKIEKVELIL 263 V KMVQ+C TYV++ D K++LI+TL +T+GKIYVE+ERARLT LA I+E+ +V EAA I+Q+LQVETYGSM K E+VE IL Sbjct: 101 VAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFIL 187
BLAST of FC891077 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3) HSP 1 Score: 105.916 bits (263), Expect = 6.613e-23 Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 3 Query: 3 VVKMVQECYTYVDKTPDEETKIKLIETLCTITDGKIYVEVERARLTHLLAKIREEERNVAEAAKIIQDLQVETYGSMNKIEKVELIL 263 V KMVQ+C TYV++ D K++LI+TL +T+GKIYVE+ERARLT LA I+E+ +V EAA I+Q+LQVETYGSM K E+VE IL Sbjct: 101 VAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFIL 187
BLAST of FC891077 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3) HSP 1 Score: 105.916 bits (263), Expect = 6.613e-23 Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 3 Query: 3 VVKMVQECYTYVDKTPDEETKIKLIETLCTITDGKIYVEVERARLTHLLAKIREEERNVAEAAKIIQDLQVETYGSMNKIEKVELIL 263 V KMVQ+C TYV++ D K++LI+TL +T+GKIYVE+ERARLT LA I+E+ +V EAA I+Q+LQVETYGSM K E+VE IL Sbjct: 101 VAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFIL 187
BLAST of FC891077 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 8.084e-21 Identity = 49/84 (58.33%), Postives = 66/84 (78.57%), Query Frame = 3 Query: 12 MVQECYTYVDKTPDEETKIKLIETLCTITDGKIYVEVERARLTHLLAKIREEERNVAEAAKIIQDLQVETYGSMNKIEKVELIL 263 +VQE YVD+ D + K++LI+TL TI+DGKI+VE ERARLT L+KI+E+E ++A AAKI+QDLQVETYG+M K EK+ + Sbjct: 105 IVQESMVYVDQITDMKQKLELIDTLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVETYGTMEKREKITFFI 188
BLAST of FC891077 vs. ExPASy Swiss-Prot
Match: RPN5_SCHPO (26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe GN=rpn5a PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 8.366e-18 Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 3 Query: 3 VVKMVQECYTYVDKTPDEETKIKLIETLCTITDGKIYVEVERARLTHLLAKIREEERNVAEAAKIIQDLQVETYGSMNKIEKVELIL 263 + +VQ TY+ D +TKI LIETL TITDGKIYVEVERARLT LL++I+EE+ ++ A +I+ + VETYGS + EKV IL Sbjct: 89 MTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFIL 175
BLAST of FC891077 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3) HSP 1 Score: 79.7221 bits (195), Expect = 5.075e-15 Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 3 Query: 12 MVQECYTYV--DKTPDEETKIKLIETLCTITDGKIYVEVERARLTHLLAKIREEERNVAEAAKIIQDLQVETYGSMNKIEKVELIL 263 M+Q+ Y+ K+ D T+I +IET+ +T+ KI+VEVERAR+T L +I++EE + EAA I+ +LQVETYGSM EK++ IL Sbjct: 96 MIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFIL 181 The following BLAST results are available for this feature:
BLAST of FC891077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC891077 ID=FC891077; Name=FC891077; organism=Citrus clementina; type=EST; length=265bpback to top |