FC891088

Overview
NameFC891088
Unique NameFC891088
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length901
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: SYVN1_DANRE (E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.640e-24
Identity = 55/111 (49.55%), Postives = 67/111 (60.36%), Query Frame = 3
Query:    3 PLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMTT-AKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGASTAGVQHGQRP 332
            PL  IR +Y   R F+  V D +  R+   NMN  +PDA+PE+L A+D+ CIICREEM T AKKL C H+FH  CLRSW +RQ TCPTCR  V+       T      Q P
Sbjct:  241 PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQATDNVCIICREEMVTGAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRASQPNQTPAPPAAQAP 351          
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: HRD1_DROME (E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.448e-24
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 3
Query:    3 PLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMTT-AKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGASTAGVQHG 323
            P+ + R ++ T RNFR  + D +  R+   NMN  +PDA+PEEL  SD+ CIICRE+M   +KKL CGH+FH  CLRSW +RQ TCPTCR  ++      STA  + G
Sbjct:  239 PMFVFRPMFFTIRNFRKALNDVIMSRRAIRNMNTLYPDATPEELRQSDNICIICREDMVNHSKKLPCGHIFHTTCLRSWFQRQQTCPTCRLNILRTPTVNSTAMPRQG 346          
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: SYVN1_HUMAN (E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.503e-24
Identity = 56/118 (47.46%), Postives = 69/118 (58.47%), Query Frame = 3
Query:    3 PLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMTT-AKKLICGHLFHVHCLRSWLERQHTCPTCRALV----VPPENGASTAGVQHGQRPDTH 341
            PL  IR +Y   R F+  V D +  R+   NMN  +PDA+PEEL A D+ CIICREEM T AK+L C H+FH  CLRSW +RQ TCPTCR  V    +P ++         G  P  H
Sbjct:  241 PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPAPH 358          
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: SYVN1_MOUSE (E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1 PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 5.881e-24
Identity = 56/118 (47.46%), Postives = 69/118 (58.47%), Query Frame = 3
Query:    3 PLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMTT-AKKLICGHLFHVHCLRSWLERQHTCPTCRALV----VPPENGASTAGVQHGQRPDTH 341
            PL  IR +Y   R F+  V D +  R+   NMN  +PDA+PEEL A D+ CIICREEM T AK+L C H+FH  CLRSW +RQ TCPTCR  V    +P ++         G  P  H
Sbjct:  241 PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAVDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPAPH 358          
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: SYVNA_XENLA (E3 ubiquitin-protein ligase synoviolin-A OS=Xenopus laevis GN=syvn1-A PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.978e-23
Identity = 50/90 (55.56%), Postives = 60/90 (66.67%), Query Frame = 3
Query:    3 PLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMTT-AKKLICGHLFHVHCLRSWLERQHTCPTCR 269
            PL  IR +Y   R F+  V D +  R+   NMN  +PDA+ EEL A D+ CIICREEM T AK+L C H+FH  CLRSW +RQ TCPTCR
Sbjct:  235 PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATAEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCR 324          
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: SYVNB_XENLA (E3 ubiquitin-protein ligase synoviolin-B OS=Xenopus laevis GN=syvn1-B PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.492e-23
Identity = 55/119 (46.22%), Postives = 68/119 (57.14%), Query Frame = 3
Query:    3 PLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMTT-AKKLICGHLFHVHCLRSWLERQHTCPTCR------ALVVPPENGASTAGVQHGQRPDT 338
            PL  IR +Y   R F+  V D V  R+   NMN  +PDA+ EEL A D+ CIICREEM + AK+L C H+FH  CLRSW +RQ TCPTCR      +L   P+  A        Q+  T
Sbjct:  235 PLFAIRPMYLAMRQFKKAVTDAVMSRRAIRNMNTLYPDATAEELQAMDNVCIICREEMVSGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPTQPQTPAEQQNQHQAQQQPT 353          
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: HRD1_CAEEL (E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans GN=sel-11 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.471e-22
Identity = 50/106 (47.17%), Postives = 65/106 (61.32%), Query Frame = 3
Query:    3 PLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMT---TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGASTAG 311
            PL  +R  Y++ R       D +  R+  + MN +FP  S E+L A D+TCIICREEMT   + K+L C H+FH HCLRSW +RQ TCPTCR  +    NGA+  G
Sbjct:  242 PLFSVRPFYQSVRALHKAFLDVILSRRAINAMNSQFPVVSAEDLAAMDATCIICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQTCPTCRTDIWQGRNGAAAGG 347          
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: HRD1_CAEBR (E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae GN=sel-11 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.471e-22
Identity = 53/123 (43.09%), Postives = 71/123 (57.72%), Query Frame = 3
Query:    3 PLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMT---TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGASTAGVQHGQRPDTHQSGTATA 362
            PL  +R  Y++ R       D +  R+  + MN +FP  S +EL A D+TCIICREEMT   + K+L C H+FH HCLRSW +RQ TCPTCR  +    NGA+  G   G   + + +G   A
Sbjct:  242 PLFSVRPFYQSVRALHKAFLDVILSRRAINAMNSQFPVVSNDELSAMDATCIICREEMTVESSPKRLPCSHVFHAHCLRSWFQRQQTCPTCRTDIWQGRNGAA-GGANAGGAAENNAAGAPPA 363          
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: HRD1_SCHPO (ERAD-associated E3 ubiquitin-protein ligase hrd1 OS=Schizosaccharomyces pombe GN=hrd1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.948e-21
Identity = 59/172 (34.30%), Postives = 86/172 (50.00%), Query Frame = 3
Query:    3 PLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEM---------------------TTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGASTAGVQHG----------QRPDTHQSGTATA-----NTASQGSANDAANNNL 410
            P++ IR++Y  F +   R+ ++ R+R+ T +MN  +P A+ E+L  SD TC ICREEM                      T K+L CGH+ H HCLR+WLERQ TCP CR  V+   N +S  G+             Q P+   + T TA     N+++QG    +  N +
Sbjct:  242 PIYSIRQMYTCFYSLFRRIREHARFRQATRDMNAMYPTATEEQLTNSDRTCTICREEMFHPDHPPENTDEMEPLPRGLDMTPKRLPCGHILHFHCLRNWLERQQTCPICRRSVI--GNQSSPTGIPASPNVRATQIATQVPNPQNTPTTTAVPGITNSSNQGDPQASTFNGV 411          
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: AMFR_MOUSE (Autocrine motility factor receptor OS=Mus musculus GN=Amfr PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.646e-16
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 3
Query:    6 LHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCR 269
            L +  +L   F   + R+  +  Y ++  NM  RF  A+PEEL  ++  C IC + M  A+KL CGHLFH  CLRSWLE+  +CPTCR
Sbjct:  292 LVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCR 379          
The following BLAST results are available for this feature:
BLAST of FC891088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SYVN1_DANRE2.640e-2449.55E3 ubiquitin-protein ligase synoviolin OS=Danio re... [more]
HRD1_DROME3.448e-2449.07E3 ubiquitin-protein ligase HRD1 OS=Drosophila mel... [more]
SYVN1_HUMAN4.503e-2447.46E3 ubiquitin-protein ligase synoviolin OS=Homo sap... [more]
SYVN1_MOUSE5.881e-2447.46E3 ubiquitin-protein ligase synoviolin OS=Mus musc... [more]
SYVNA_XENLA4.978e-2355.56E3 ubiquitin-protein ligase synoviolin-A OS=Xenopu... [more]
SYVNB_XENLA8.492e-2346.22E3 ubiquitin-protein ligase synoviolin-B OS=Xenopu... [more]
HRD1_CAEEL2.471e-2247.17E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditi... [more]
HRD1_CAEBR2.471e-2243.09E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditi... [more]
HRD1_SCHPO7.948e-2134.30ERAD-associated E3 ubiquitin-protein ligase hrd1 O... [more]
AMFR_MOUSE2.646e-1644.32Autocrine motility factor receptor OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA82DA06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA82DA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC891088 ID=FC891088; Name=FC891088; organism=Citrus clementina; type=EST; length=901bp
TTCCTTTGCACTTAATACGTGAGCTATATGAGACATTTAGGAATTTCAGG
ATCCGTGTTGCTGATTATGTTCGTTATCGAAAGATCACTTCAAATATGAA
TGATCGATTTCCAGATGCATCACCTGAAGAGCTTGATGCAAGTGATTCAA
CCTGTATTATATGTCGTGAGGAGATGACAACAGCCAAGAAATTAATTTGT
GGACATCTTTTCCATGTCCACTGCCTTCGCTCATGGTTGGAGCGACAGCA
TACCTGTCCTACTTGCAGAGCTTTAGTTGTACCACCTGAAAATGGGGCAA
GCACTGCTGGAGTACAACATGGCCAAAGGCCGGATACTCACCAATCGGGT
ACTGCTACTGCAAACACAGCTTCCCAAGGTTCAGCTAATGATGCGGCTAA
CAATAACTTGACTCTCCACCAGGCTAGGCTCCAGGCTGCCGCTGTCGCTG
CCTCGGTATATGGGAAATCCTATGTTTATCCTTCTCCCAACACACTAGTT
TGGTCTCCTGGATATGTTGTACTTCCTCAAGCTAACAGGCCTTTGGGTGA
TTACACCAGTGTAGAATTGGGTCAAGAACAGGCTTCTGCTGGTCAACCAC
AGCAGTTTGTGAATCCTGGTGGATCTGCTACCTTCTCGTTTCCTCAATTT
CCTCAATCAGTTTTTGTCCCTTTTCAGACACCTGACGCCAATTTGATTGG
TGGAGAAAGACTGCCAAGCACTCAAAATACACCAGTCTCTCAGCTGGAAG
CTCAGAGAAAATTTATTGAGAACCAGATTGAGGTCCTACAAAACCAGCTC
CAACTTCTGCAGAAGTCAAAGCCCGAGGGAAATGTGGAAACAAATTCTAC
AGCGTCATCAGGTGGCAAAGGAAAGGCAGTTGCATCTTCATCTGTTTCTG
C
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