FC891088
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: SYVN1_DANRE (E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 2.640e-24 Identity = 55/111 (49.55%), Postives = 67/111 (60.36%), Query Frame = 3 Query: 3 PLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMTT-AKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGASTAGVQHGQRP 332 PL IR +Y R F+ V D + R+ NMN +PDA+PE+L A+D+ CIICREEM T AKKL C H+FH CLRSW +RQ TCPTCR V+ T Q P Sbjct: 241 PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQATDNVCIICREEMVTGAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRASQPNQTPAPPAAQAP 351
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: HRD1_DROME (E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3 PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.448e-24 Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 3 Query: 3 PLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMTT-AKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGASTAGVQHG 323 P+ + R ++ T RNFR + D + R+ NMN +PDA+PEEL SD+ CIICRE+M +KKL CGH+FH CLRSW +RQ TCPTCR ++ STA + G Sbjct: 239 PMFVFRPMFFTIRNFRKALNDVIMSRRAIRNMNTLYPDATPEELRQSDNICIICREDMVNHSKKLPCGHIFHTTCLRSWFQRQQTCPTCRLNILRTPTVNSTAMPRQG 346
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: SYVN1_HUMAN (E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1 PE=1 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 4.503e-24 Identity = 56/118 (47.46%), Postives = 69/118 (58.47%), Query Frame = 3 Query: 3 PLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMTT-AKKLICGHLFHVHCLRSWLERQHTCPTCRALV----VPPENGASTAGVQHGQRPDTH 341 PL IR +Y R F+ V D + R+ NMN +PDA+PEEL A D+ CIICREEM T AK+L C H+FH CLRSW +RQ TCPTCR V +P ++ G P H Sbjct: 241 PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPAPH 358
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: SYVN1_MOUSE (E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1 PE=1 SV=3) HSP 1 Score: 111.694 bits (278), Expect = 5.881e-24 Identity = 56/118 (47.46%), Postives = 69/118 (58.47%), Query Frame = 3 Query: 3 PLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMTT-AKKLICGHLFHVHCLRSWLERQHTCPTCRALV----VPPENGASTAGVQHGQRPDTH 341 PL IR +Y R F+ V D + R+ NMN +PDA+PEEL A D+ CIICREEM T AK+L C H+FH CLRSW +RQ TCPTCR V +P ++ G P H Sbjct: 241 PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAVDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPAPH 358
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: SYVNA_XENLA (E3 ubiquitin-protein ligase synoviolin-A OS=Xenopus laevis GN=syvn1-A PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.978e-23 Identity = 50/90 (55.56%), Postives = 60/90 (66.67%), Query Frame = 3 Query: 3 PLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMTT-AKKLICGHLFHVHCLRSWLERQHTCPTCR 269 PL IR +Y R F+ V D + R+ NMN +PDA+ EEL A D+ CIICREEM T AK+L C H+FH CLRSW +RQ TCPTCR Sbjct: 235 PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATAEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCR 324
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: SYVNB_XENLA (E3 ubiquitin-protein ligase synoviolin-B OS=Xenopus laevis GN=syvn1-B PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 8.492e-23 Identity = 55/119 (46.22%), Postives = 68/119 (57.14%), Query Frame = 3 Query: 3 PLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMTT-AKKLICGHLFHVHCLRSWLERQHTCPTCR------ALVVPPENGASTAGVQHGQRPDT 338 PL IR +Y R F+ V D V R+ NMN +PDA+ EEL A D+ CIICREEM + AK+L C H+FH CLRSW +RQ TCPTCR +L P+ A Q+ T Sbjct: 235 PLFAIRPMYLAMRQFKKAVTDAVMSRRAIRNMNTLYPDATAEELQAMDNVCIICREEMVSGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPTQPQTPAEQQNQHQAQQQPT 353
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: HRD1_CAEEL (E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans GN=sel-11 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.471e-22 Identity = 50/106 (47.17%), Postives = 65/106 (61.32%), Query Frame = 3 Query: 3 PLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMT---TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGASTAG 311 PL +R Y++ R D + R+ + MN +FP S E+L A D+TCIICREEMT + K+L C H+FH HCLRSW +RQ TCPTCR + NGA+ G Sbjct: 242 PLFSVRPFYQSVRALHKAFLDVILSRRAINAMNSQFPVVSAEDLAAMDATCIICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQTCPTCRTDIWQGRNGAAAGG 347
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: HRD1_CAEBR (E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae GN=sel-11 PE=3 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 2.471e-22 Identity = 53/123 (43.09%), Postives = 71/123 (57.72%), Query Frame = 3 Query: 3 PLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMT---TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGASTAGVQHGQRPDTHQSGTATA 362 PL +R Y++ R D + R+ + MN +FP S +EL A D+TCIICREEMT + K+L C H+FH HCLRSW +RQ TCPTCR + NGA+ G G + + +G A Sbjct: 242 PLFSVRPFYQSVRALHKAFLDVILSRRAINAMNSQFPVVSNDELSAMDATCIICREEMTVESSPKRLPCSHVFHAHCLRSWFQRQQTCPTCRTDIWQGRNGAA-GGANAGGAAENNAAGAPPA 363
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: HRD1_SCHPO (ERAD-associated E3 ubiquitin-protein ligase hrd1 OS=Schizosaccharomyces pombe GN=hrd1 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.948e-21 Identity = 59/172 (34.30%), Postives = 86/172 (50.00%), Query Frame = 3 Query: 3 PLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEM---------------------TTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGASTAGVQHG----------QRPDTHQSGTATA-----NTASQGSANDAANNNL 410 P++ IR++Y F + R+ ++ R+R+ T +MN +P A+ E+L SD TC ICREEM T K+L CGH+ H HCLR+WLERQ TCP CR V+ N +S G+ Q P+ + T TA N+++QG + N + Sbjct: 242 PIYSIRQMYTCFYSLFRRIREHARFRQATRDMNAMYPTATEEQLTNSDRTCTICREEMFHPDHPPENTDEMEPLPRGLDMTPKRLPCGHILHFHCLRNWLERQQTCPICRRSVI--GNQSSPTGIPASPNVRATQIATQVPNPQNTPTTTAVPGITNSSNQGDPQASTFNGV 411
BLAST of FC891088 vs. ExPASy Swiss-Prot
Match: AMFR_MOUSE (Autocrine motility factor receptor OS=Mus musculus GN=Amfr PE=1 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 2.646e-16 Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 3 Query: 6 LHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCR 269 L + +L F + R+ + Y ++ NM RF A+PEEL ++ C IC + M A+KL CGHLFH CLRSWLE+ +CPTCR Sbjct: 292 LVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCR 379 The following BLAST results are available for this feature:
BLAST of FC891088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >FC891088 ID=FC891088; Name=FC891088; organism=Citrus clementina; type=EST; length=901bpback to top |