FC910641

Overview
NameFC910641
Unique NameFC910641
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910641 vs. ExPASy Swiss-Prot
Match: OTC_PEA (Ornithine carbamoyltransferase, chloroplastic OS=Pisum sativum GN=ARGF PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 5.096e-84
Identity = 155/200 (77.50%), Postives = 174/200 (87.00%), Query Frame = 2
Query:  164 ASAALTFPVLRRSITCQASSATSAPNSIHGKPKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHS 763
            +S++ + P   R I+CQASSA +A +++  K      DF+HI DFDK TI+KILDRA EVK LLKSGDR+F PF+GKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGP+DIQMGKREETRD ARVL RYNDIIMARVF HQDILDLAK+A+VPVINGLTDYNHP QIMADALT+IEH+GR EGTKVVYVGDGNN+VHS
Sbjct:   37 SSSSSSSPSPLRRISCQASSAPAAESTLTAKVGNGLKDFIHIDDFDKETILKILDRAIEVKTLLKSGDRTFRPFEGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPNDIQMGKREETRDVARVLSRYNDIIMARVFSHQDILDLAKYASVPVINGLTDYNHPVQIMADALTMIEHIGRFEGTKVVYVGDGNNIVHS 236          
BLAST of FC910641 vs. ExPASy Swiss-Prot
Match: OTC_ARATH (Ornithine carbamoyltransferase, chloroplastic OS=Arabidopsis thaliana GN=OTC PE=1 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 5.273e-81
Identity = 152/212 (71.70%), Postives = 179/212 (84.43%), Query Frame = 2
Query:  143 SRFPATS----ASAALTFPVLRR-SITCQASSATSAPNSIHGKPKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHS 763
            S FP T+    ++ +L  P L R  ++CQASS TS  +    K K++  DFL I DFD ATI  ILD+A+EVKALLKSG+R++LPFKGK+MSMIFAKPSMRTRVSFETGF LLGGHA+YLGP+DIQMGKREETRD ARVL RYNDIIMARVF HQDILDLA +++VPV+NGLTD+NHPCQIMADALT+IEH+G++EGTKVVYVGDGNN+VHS
Sbjct:   25 SFFPGTTLRRFSAVSLPSPALPRLRVSCQASSVTSPSSPSDVKGKSDLKDFLAIDDFDTATIKTILDKASEVKALLKSGERNYLPFKGKSMSMIFAKPSMRTRVSFETGFFLLGGHALYLGPNDIQMGKREETRDVARVLSRYNDIIMARVFAHQDILDLANYSSVPVVNGLTDHNHPCQIMADALTMIEHIGQVEGTKVVYVGDGNNMVHS 236          
BLAST of FC910641 vs. ExPASy Swiss-Prot
Match: OTC_ANOFW (Ornithine carbamoyltransferase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=argF PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.444e-43
Identity = 85/163 (52.15%), Postives = 114/163 (69.94%), Query Frame = 2
Query:  275 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHS 763
            DFL ++D+ K  I  +L  A E+K   ++G+R + P  GKT++MIF KPS RTRVSFE G   LGGHA++L   D+Q+G+ E   D ARVL  Y D IM R F H+ + +LA +AT+PVINGLTD +HPCQ +AD LTI E  G+L+G K+ Y+GDGNN+ H+
Sbjct:   13 DFLTLADYSKEEIEYLLHLAVELKEKQQNGER-YTPLSGKTLAMIFEKPSTRTRVSFEVGMVQLGGHALHLSSRDLQIGRGETIADTARVLSEYVDAIMIRTFEHEKVEELAHYATIPVINGLTDDDHPCQALADLLTIYEVKGKLQGLKLAYIGDGNNMAHA 174          
BLAST of FC910641 vs. ExPASy Swiss-Prot
Match: OTC_PYRFU (Ornithine carbamoyltransferase OS=Pyrococcus furiosus GN=argF PE=1 SV=6)

HSP 1 Score: 173.711 bits (439), Expect = 9.722e-43
Identity = 90/163 (55.21%), Postives = 112/163 (68.71%), Query Frame = 2
Query:  275 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHS 763
            D L + D+    I  IL+ A   K   K G    L  +GKT++MIF KPS RTRVSFE   + LGGHA+YL   D+Q+ + E   D ARVL RY D IMARV+ H+D+ DLAK+ATVPVINGL+D++HPCQ +AD +TI E  G ++G KVVYVGDGNNV HS
Sbjct:    9 DLLCLQDYTAEEIWTILETAKMFKIWQKIGKPHRL-LEGKTLAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAKYATVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVAHS 170          
BLAST of FC910641 vs. ExPASy Swiss-Prot
Match: OTC_PYRAB (Ornithine carbamoyltransferase OS=Pyrococcus abyssi GN=argF PE=3 SV=4)

HSP 1 Score: 172.94 bits (437), Expect = 1.658e-42
Identity = 89/163 (54.60%), Postives = 113/163 (69.33%), Query Frame = 2
Query:  275 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHS 763
            D L + D+    I  IL+ A  +K   K G    L  +GKT++MIF KPS RTRVSFE   + LGGHA+YL   D+Q+ + E   D ARVL RY D IMARV+ H+D+ DLAK+A+VPVINGL+D++HPCQ +AD +TI E  G ++G KVVYVGDGNNV HS
Sbjct:    9 DLLCLQDYTPEEIWTILETAKMLKIWQKIGKPHRL-LEGKTLAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAKYASVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVAHS 170          
BLAST of FC910641 vs. ExPASy Swiss-Prot
Match: OTC_PYRHO (Ornithine carbamoyltransferase OS=Pyrococcus horikoshii GN=argF PE=3 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 2.829e-42
Identity = 89/163 (54.60%), Postives = 112/163 (68.71%), Query Frame = 2
Query:  275 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHS 763
            D L + D+    I  IL+ A   K   K G    L  +GKT++MIF KPS RTRVSFE   + LGGHA+YL   D+Q+ + E   D ARVL RY D IMARV+ H+D+ DLAK+A+VPVINGL+D++HPCQ +AD +TI E  G ++G KVVYVGDGNNV HS
Sbjct:    9 DLLCLQDYTPEEIWTILETAKMFKIWQKIGKPHRL-LEGKTLAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYAHKDVEDLAKYASVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVCHS 170          
BLAST of FC910641 vs. ExPASy Swiss-Prot
Match: OTC_PYRKO (Ornithine carbamoyltransferase OS=Pyrococcus kodakaraensis GN=argF PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.825e-42
Identity = 87/163 (53.37%), Postives = 113/163 (69.33%), Query Frame = 2
Query:  275 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHS 763
            D L + DF +  +  IL  A  +K   K G +     +GKT++MIF KPS RTR+SFE G   LGG+ +YL   D+Q+ + E   D ARVL RY D IMARVF H+D+ DLAK+A+VPVINGL+D++HPCQ +AD  TI+E  GR++G K+VYVGDGNNV HS
Sbjct:    9 DVLCLQDFTREELETILKTAEMMKIWNKIG-KPHRVLEGKTLAMIFQKPSTRTRISFEVGIYQLGGYGLYLNAQDLQLRRGETIADTARVLSRYVDGIMARVFDHKDVEDLAKYASVPVINGLSDFSHPCQALADYQTILEKKGRIQGLKIVYVGDGNNVAHS 170          
BLAST of FC910641 vs. ExPASy Swiss-Prot
Match: OTC_HALWD (Ornithine carbamoyltransferase OS=Haloquadratum walsbyi (strain DSM 16790) GN=arcB PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.230e-42
Identity = 88/166 (53.01%), Postives = 111/166 (66.87%), Query Frame = 2
Query:  266 EQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHS 763
            + ++FL I D     +  ILDRA    AL   GD +  P  G+T+ M+F KPS RTR+SFETG + LGGHAI+LGPDDIQ+G  E   D ARVL  Y D++MAR+F H D+L++A  A +PVINGLTD  HPCQ +AD LTI E  G  +   VV++GDGNNV  S
Sbjct:    3 KSSNFLDIDDLTTDELQTILDRAT---ALKHGGDNAQFP--GQTLGMLFEKPSTRTRISFETGMTQLGGHAIFLGPDDIQLGHGEPLSDTARVLSGYVDVVMARLFNHDDLLEIAAHADIPVINGLTDDAHPCQTLADLLTIKEEFGGFDDVTVVWIGDGNNVGQS 163          
BLAST of FC910641 vs. ExPASy Swiss-Prot
Match: OTC_SYMTH (Ornithine carbamoyltransferase OS=Symbiobacterium thermophilum GN=argF PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.100e-41
Identity = 82/163 (50.31%), Postives = 112/163 (68.71%), Query Frame = 2
Query:  275 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHS 763
            DF+ + D+ +  + ++L+ A   KA LK+G R   P KGK + M FAKPS RTR+SFE G   LGG A++L   D+Q+ + E   D ARV+ R+ D IM R F H+++++LA++AT+PVINGLTD  HPCQ++AD LT +E  G L G K+ YVGDGNNV HS
Sbjct:    8 DFISLHDWSRDELEEVLELAMWQKARLKAGIRDE-PLKGKQLGMYFAKPSTRTRLSFEVGIRQLGGDALFLSAHDLQLQRGESIADTARVMSRFLDGIMIRTFSHREVVELAEWATIPVINGLTDEEHPCQVVADLLTALERFGTLPGLKLAYVGDGNNVAHS 169          
BLAST of FC910641 vs. ExPASy Swiss-Prot
Match: OTC_CARHZ (Ornithine carbamoyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=argF PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.703e-40
Identity = 86/163 (52.76%), Postives = 110/163 (67.48%), Query Frame = 2
Query:  275 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHS 763
            DFL ++D     I ++LD A+E+K   K G  + +  KGKT++MIF+K S RTRVSFE G   LGG+ +++   D Q+ + E   D ARVL R  D IM R + H ++ +LA +A VPVINGLTDY HPCQIMAD LTI EH G+L G KV +VGDGNNV HS
Sbjct:    9 DFLSMNDLTGEEIEEVLDLASELKIRQKKGISTPI-LKGKTLAMIFSKNSTRTRVSFEVGMVQLGGYPLFITATDSQLSRGEPIADTARVLSRMVDGIMIRTYSHSEVEELAYYADVPVINGLTDYEHPCQIMADLLTIKEHKGQLRGLKVAWVGDGNNVCHS 170          
The following BLAST results are available for this feature:
BLAST of FC910641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
OTC_PEA5.096e-8477.50Ornithine carbamoyltransferase, chloroplastic OS=P... [more]
OTC_ARATH5.273e-8171.70Ornithine carbamoyltransferase, chloroplastic OS=A... [more]
OTC_ANOFW7.444e-4352.15Ornithine carbamoyltransferase OS=Anoxybacillus fl... [more]
OTC_PYRFU9.722e-4355.21Ornithine carbamoyltransferase OS=Pyrococcus furio... [more]
OTC_PYRAB1.658e-4254.60Ornithine carbamoyltransferase OS=Pyrococcus abyss... [more]
OTC_PYRHO2.829e-4254.60Ornithine carbamoyltransferase OS=Pyrococcus horik... [more]
OTC_PYRKO4.825e-4253.37Ornithine carbamoyltransferase OS=Pyrococcus kodak... [more]
OTC_HALWD8.230e-4253.01Ornithine carbamoyltransferase OS=Haloquadratum wa... [more]
OTC_SYMTH9.100e-4150.31Ornithine carbamoyltransferase OS=Symbiobacterium ... [more]
OTC_CARHZ7.703e-4052.76Ornithine carbamoyltransferase OS=Carboxydothermus... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA56BG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56BG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910641 ID=FC910641; Name=FC910641; organism=Citrus clementina; type=EST; length=764bp
CTCAAAGGAAGAAGGGGCTTGTTACCAGTTCCCACCAAAATCAATGGCGG
CGATTTCAAGTTGCTGTACATATCGATCGGGCAAAATGCCTCTATCCGCT
TCTTCTTCTTCTTCTTTCTCCGGAAAGTTTCTCCCGAAACAATCGCGATT
TCCTGCCACGTCGGCGTCTGCTGCCCTGACATTTCCGGTCCTCCGAAGAA
GCATCACGTGCCAGGCATCCTCGGCCACGTCAGCTCCTAATTCCATCCAC
GGCAAACCAAAAGCAGAGCAGACGGATTTTCTGCACATCAGCGATTTTGA
CAAAGCTACCATAATGAAGATTTTAGACCGAGCTGCTGAGGTCAAGGCAC
TACTTAAGTCAGGGGATAGGTCATTTTTGCCGTTTAAAGGGAAGACAATG
TCTATGATCTTTGCAAAGCCATCCATGAGAACTCGGGTTTCATTTGAAAC
AGGGTTTTCCTTGTTGGGAGGCCATGCTATATACTTAGGACCTGATGATA
TCCAGATGGGAAAGAGAGAGGAAACACGTGACGCTGCTCGTGTTCTATGT
CGCTACAATGATATTATTATGGCACGTGTTTTTGGTCATCAGGACATTCT
TGATCTCGCTAAATTTGCAACTGTACCAGTTATCAATGGCTTGACAGACT
ACAACCATCCTTGCCAAATAATGGCTGATGCCCTCACCATTATTGAACAC
GTTGGTCGTCTGGAAGGAACCAAGGTTGTCTATGTTGGAGATGGAAATAA
CGTAGTGCACTCTT
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