FC917037

Overview
NameFC917037
Unique NameFC917037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917037 vs. ExPASy Swiss-Prot
Match: DDPS2_ARATH (Dehydrodolichyl diphosphate synthase 2 OS=Arabidopsis thaliana GN=At5g58770 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.491e-24
Identity = 50/106 (47.17%), Postives = 79/106 (74.53%), Query Frame = 2
Query:  491 VRMLIIFLINF-YWLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVI 805
            +++L +F  +   W++ ++E++FL  LFE+S+K+E +      +RIS+IGDSS+LP++L  ++ + E+ TKNN+  QLIVAV YSGKYDV+QAC+ IA++VKD  I
Sbjct:  122 IQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLKTEFQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEI 227          
BLAST of FC917037 vs. ExPASy Swiss-Prot
Match: DDPS5_ARATH (Dehydrodolichyl diphosphate synthase 5 OS=Arabidopsis thaliana GN=At5g58784 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.641e-17
Identity = 42/94 (44.68%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  527 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIR 808
            W + + EV+ LM LFEK + S++    S+ I+IS+IG+ ++LP +L  L+ + E+ TK+     LI+A+ YSG+YD++QACKS+A KVKD +I+
Sbjct:  128 WERPEDEVKCLMALFEKYLASDMPYLRSDKIKISVIGNRTKLPESLLGLIEEVEEATKSYEGKNLIIAIDYSGRYDILQACKSLANKVKDGLIQ 221          
BLAST of FC917037 vs. ExPASy Swiss-Prot
Match: UPPS1_ANASP (Undecaprenyl pyrophosphate synthetase 1 OS=Anabaena sp. (strain PCC 7120) GN=uppS1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.110e-15
Identity = 36/94 (38.30%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  527 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIR 808
            W + Q EVEFLM LF++ ++ EL   + E ++I  +G+ + LPR+LQ  +  + + TKNN   +  VA +Y G+ +++QAC++IAQKV+  +++
Sbjct:   78 WKRPQEEVEFLMTLFQRVLRQELREMVEENVQIQFVGNLTALPRSLQAEISRSMEETKNNRGIRFSVATNYGGRQEILQACRAIAQKVQQGLLQ 171          
BLAST of FC917037 vs. ExPASy Swiss-Prot
Match: UPPS_ANAVT (Undecaprenyl pyrophosphate synthetase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=uppS PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.449e-15
Identity = 36/94 (38.30%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  527 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIR 808
            W + Q EVEFLM LF++ ++ EL   + E ++I  +G+ + LPR+LQ  +  + + TKNN   +  VA +Y G+ +++QAC++IAQKV+  +++
Sbjct:   78 WKRPQEEVEFLMTLFQRVLRQELREMVEENVQIQFVGNLAALPRSLQAEISRSMEATKNNRGIRFSVATNYGGRQEILQACRAIAQKVQQGLLQ 171          
BLAST of FC917037 vs. ExPASy Swiss-Prot
Match: DDPS4_ARATH (Dehydrodolichyl diphosphate synthase 4 OS=Arabidopsis thaliana GN=At5g58782 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.602e-14
Identity = 36/94 (38.30%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  527 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIR 808
            W + ++EV+ LM LF++ +KS+++ F S+ IR+S+IG+ +++P +L   V + E+ TK+     LI+A+ YSG++D++ ACK+I +K +  +IR
Sbjct:  115 WGRHKIEVKCLMYLFQRYLKSKIQFFQSKEIRVSVIGNLAKIPESLLRTVHELEEATKSYKKKHLILAIDYSGRFDILGACKNIVKKSEQGLIR 208          
BLAST of FC917037 vs. ExPASy Swiss-Prot
Match: UPPS_THEEB (Undecaprenyl pyrophosphate synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=uppS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.089e-14
Identity = 36/89 (40.45%), Postives = 58/89 (65.17%), Query Frame = 2
Query:  527 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVK 793
            W +   EVEFLM LFE+ ++ EL   ++EG++I  +GD + LP++LQ  +  A   T NN   + +VA +Y G+ +++ AC+SIA +VK
Sbjct:   80 WGRPLPEVEFLMTLFEQVLRRELGEMVAEGVQIHFVGDLTCLPKSLQAEIERAVAATANNQKIKFVVATNYGGRREIIHACRSIAAQVK 168          
BLAST of FC917037 vs. ExPASy Swiss-Prot
Match: UPPS_PROMP (Undecaprenyl pyrophosphate synthetase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=uppS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.953e-14
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  527 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIR 808
            W++   EV+FL+ LFEK +K E+     E I+I  IGD S LP +L+ L++ +E  T NN  F L + V+Y G+ ++V+A K IA K     I+
Sbjct:   81 WIRPSNEVDFLINLFEKVLKKEISEIHQESIKIKFIGDLSPLPNSLKLLIKSSEALTNNNKKFTLNICVNYGGRQEIVKAAKEIAIKSSSGKIK 174          
BLAST of FC917037 vs. ExPASy Swiss-Prot
Match: UPPS_SYNY3 (Undecaprenyl pyrophosphate synthetase OS=Synechocystis sp. (strain PCC 6803) GN=uppS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.357e-13
Identity = 34/89 (38.20%), Postives = 61/89 (68.54%), Query Frame = 2
Query:  527 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVK 793
            W +   EVEFLM LFE+ ++ EL+  ++E +RI  +G+ + LPR+LQ+ +  + + TKNN+  +  VA +Y G+ ++V  C++IA++V+
Sbjct:   78 WGRPLEEVEFLMTLFERVLRRELKEMMAENVRIRFVGNLTSLPRSLQDEIARSMEDTKNNTGIRFTVATNYGGRQEIVHVCQAIAREVQ 166          
BLAST of FC917037 vs. ExPASy Swiss-Prot
Match: UPPS_GLOVI (Undecaprenyl pyrophosphate synthetase OS=Gloeobacter violaceus GN=uppS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.772e-13
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  527 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVK 793
            W + Q EVEFLM LFEK +  EL   + EG+RI  +G  + LP  LQ  +  A   T+ N+  +  VA +Y G+ ++V AC+ +A++V+
Sbjct:   78 WKRPQYEVEFLMALFEKVLNHELSEMVDEGVRIRFVGALAHLPGALQSAIEGAMAATEANTAVEFTVATNYGGRQEIVNACRELAEQVR 166          
BLAST of FC917037 vs. ExPASy Swiss-Prot
Match: DDPS3_ARATH (Dehydrodolichyl diphosphate synthase 3 OS=Arabidopsis thaliana GN=At5g58780 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.733e-13
Identity = 34/94 (36.17%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  527 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIR 808
            W + ++EV+ LM L +  +KS+++ F  E  R+S+IG+ +++P +L   V++ E+ T++     LI+A+ YSG+ D+++ACKSI +K +  +IR
Sbjct:  128 WGRHKIEVKCLMSLIQHYLKSKIQYFQREETRVSVIGNLTKIPESLLRTVQEIEEATRSYKKKHLILAIDYSGRLDILRACKSIVKKSEKGLIR 221          
The following BLAST results are available for this feature:
BLAST of FC917037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
DDPS2_ARATH6.491e-2447.17Dehydrodolichyl diphosphate synthase 2 OS=Arabidop... [more]
DDPS5_ARATH2.641e-1744.68Dehydrodolichyl diphosphate synthase 5 OS=Arabidop... [more]
UPPS1_ANASP1.110e-1538.30Undecaprenyl pyrophosphate synthetase 1 OS=Anabaen... [more]
UPPS_ANAVT1.449e-1538.30Undecaprenyl pyrophosphate synthetase OS=Anabaena ... [more]
DDPS4_ARATH1.602e-1438.30Dehydrodolichyl diphosphate synthase 4 OS=Arabidop... [more]
UPPS_THEEB6.089e-1440.45Undecaprenyl pyrophosphate synthetase OS=Thermosyn... [more]
UPPS_PROMP7.953e-1440.43Undecaprenyl pyrophosphate synthetase OS=Prochloro... [more]
UPPS_SYNY31.357e-1338.20Undecaprenyl pyrophosphate synthetase OS=Synechocy... [more]
UPPS_GLOVI1.772e-1339.33Undecaprenyl pyrophosphate synthetase OS=Gloeobact... [more]
DDPS3_ARATH6.733e-1336.17Dehydrodolichyl diphosphate synthase 3 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88DE06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917037 ID=FC917037; Name=FC917037; organism=Citrus clementina; type=EST; length=809bp
AATAAACGACAAGTTAGTTCATCGCTAACTTGTTATCGTGAATTCTCCAG
TTCCAAACACTCTCTTTGCCCCGAAACTCAATCCTTCGCGCTCCCAAACC
CGCATCACACCTCCGTTTTCTCTTCGCAAGGTTCGAGCAGCAGCGGCGGC
GGCGTTCGAATGAGAGGATTTCAGATTTGTCTCTGGAGGAGGAGGAGTTG
CCGGCGGGACTAAATAGGGAGGCGAACGATTGTTTTTATCACTAGTTGTT
GCTTAATTTTAAAACCACAGTAGCTAAAGAACGAACGATTGTTTTTATCA
CCACGCAATTACACTCAACGACTATGATTTCATTTCATTTCATTTCGCAG
CAACTTAGGATTAAAAGTCACGACACCCCGATACTAGCTGGCTAATTAAT
TGATCCGAGTAACGATAAACGTGCAACAGACACAGTTTTGTAACCAAGTG
TCAAAACAACATCGTTTTGAGGAATTTGATTTTGCCACTTGTTCGCATGC
TTATCATTTTTCTAATTAATTTTTATTGGTTAAAAGTGCAGGTGGAGGTC
GAATTCTTGATGAAACTGTTCGAAAAATCCATAAAGTCGGAGCTAGAGGG
TTTCATAAGCGAAGGTATTCGAATATCTATGATTGGGGATTCATCGAGAC
TCCCAAGGACTCTCCAGGAACTTGTACGTGATGCAGAGGATAGAACAAAA
AATAACTCAAATTTCCAACTCATTGTGGCAGTTAGCTACAGCGGCAAATA
TGATGTTGTACAGGCTTGCAAAAGTATTGCACAAAAAGTGAAAGACGATG
TTATTCGAC
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