FC917348

Overview
NameFC917348
Unique NameFC917348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSRP1_VICFA (FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1)

HSP 1 Score: 404.445 bits (1038), Expect = 3.072e-112
Identity = 196/231 (84.85%), Postives = 211/231 (91.34%), Query Frame = 1
Query:   31 MTDGPFFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLS 723
            MTDG  FNNI+LG RGGTNPGQ+KIYSG I WK+ GGGK ++VDK DI GVTWMKVP+TNQLGV+ KDGL YKFTGFRDQDV +LTNFFQ+ FGI+ EEKQLSV+GRNWGEVDLNGNML FMVG KQAFEVSLADVSQT LQGKNDVILEFHVDDTTGANEKDSLME+SFHIP+SNTQFVGDEN P AQVFRDKIMSMADVG GGE+AVVTF+GIAILTPRGRYSVELHLS
Sbjct:    1 MTDGHLFNNITLGXRGGTNPGQIKIYSGGILWKRQGGGKTIDVDKTDIMGVTWMKVPKTNQLGVQIKDGLLYKFTGFRDQDVVSLTNFFQNTFGITVEEKQLSVTGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTNLQGKNDVILEFHVDDTTGANEKDSLMEMSFHIPSSNTQFVGDENRPSAQVFRDKIMSMADVGVGGEDAVVTFDGIAILTPRGRYSVELHLS 231          
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSRP1_CATRO (FACT complex subunit SSRP1 OS=Catharanthus roseus GN=SSRP1 PE=2 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 8.103e-105
Identity = 186/231 (80.52%), Postives = 206/231 (89.18%), Query Frame = 1
Query:   31 MTDGPFFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLS 723
            M DG  FNNI+LGGRGGTNPGQL+++SG I WKK GG KAVEVDK D+ G+TWMKVPR+NQLGVR KDGL+YKFTGFRDQDVA+LT++ QS  GI+PEEKQLSVSG+NWGEVDLNGNMLTF+VG KQAFEVSLADV+QTQLQGKNDV+LEF          K+SLMEISFH+PNSNTQFVGDEN PPAQVFRDKIMSMADVGAGGE+AVVTFEGIAILTPRGRY+VELHLS
Sbjct:    1 MADGHLFNNITLGGRGGTNPGQLRVHSGGILWKKQGGAKAVEVDKSDMVGLTWMKVPRSNQLGVRIKDGLFYKFTGFRDQDVASLTSYLQSTCGITPEEKQLSVSGKNWGEVDLNGNMLTFLVGSKQAFEVSLADVAQTQLQGKNDVMLEFMWMILLEQMRKNSLMEISFHVPNSNTQFVGDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYNVELHLS 231          
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSRP1_ARATH (FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1 SV=2)

HSP 1 Score: 373.629 bits (958), Expect = 5.807e-103
Identity = 183/231 (79.22%), Postives = 202/231 (87.45%), Query Frame = 1
Query:   31 MTDGPFFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLS 723
            M DG  FNNISL GRGG NPG LKI SG I WKK GGGKAVEVD+ DI  V+W KV ++NQLGV+TKDGLYYKF GFRDQDV +L++FFQS++G +P+EKQLSVSGRNWGEVDL+GN LTF+VG KQAFEVSLADVSQTQLQGKNDV LEFHVDDT GANEKDSLMEISFHIPNSNTQFVGDEN PP+QVF D I++MADV  G E+AVVTFE IAILTPRGRY+VELHLS
Sbjct:    1 MADGHSFNNISLSGRGGKNPGLLKINSGGIQWKKQGGGKAVEVDRSDIVSVSWTKVTKSNQLGVKTKDGLYYKFVGFRDQDVPSLSSFFQSSYGKTPDEKQLSVSGRNWGEVDLHGNTLTFLVGSKQAFEVSLADVSQTQLQGKNDVTLEFHVDDTAGANEKDSLMEISFHIPNSNTQFVGDENRPPSQVFNDTIVAMADVSPGVEDAVVTFESIAILTPRGRYNVELHLS 231          
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSP1A_ORYSJ (FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica GN=SSRP1-A PE=2 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 1.748e-99
Identity = 172/231 (74.46%), Postives = 199/231 (86.15%), Query Frame = 1
Query:   31 MTDGPFFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLS 723
            MTDG  FNNI LGGR G+NPGQ K+YSG ++WK+ GGGK +E++K D+  VTWMKVPR  QLGVRTKDGL+YKF GFR+QDV++LTNF Q N G+SP+EKQLSVSG+NWG +D+NGNMLTFMVG KQAFEVSLADVSQTQ+QGK DV+LEFHVDDTTG NEKDSLM++SFH+P SNTQF+GDEN   AQV  + IM +ADV +  EEAVVTFEGIAILTPRGRYSVELHLS
Sbjct:    1 MTDGHLFNNILLGGRAGSNPGQFKVYSGGLAWKRQGGGKTIEIEKSDLTSVTWMKVPRAYQLGVRTKDGLFYKFIGFREQDVSSLTNFMQKNMGLSPDEKQLSVSGQNWGGIDINGNMLTFMVGSKQAFEVSLADVSQTQMQGKTDVLLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFLGDENRTAAQVLWETIMGVADVDS-SEEAVVTFEGIAILTPRGRYSVELHLS 230          
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSRP1_MAIZE (FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.137e-97
Identity = 166/231 (71.86%), Postives = 196/231 (84.85%), Query Frame = 1
Query:   31 MTDGPFFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLS 723
            MTDG  FNNI LGGRGGTNPGQ K++SG ++WK+ GGGK +E+DK D+  VTWMKVPR  QLGVR K GL+Y+F GFR+QDV+ LTNF Q N G++P+EKQLSVSG+NWG +D++GNMLTFMVG KQAFEVSL DV+QTQ+QGK DV+LE HVDDTTGANEKDSLM++SFH+P SNTQFVGDE+ PPA +  + I+  ADVG+  EE VVTFEGIAILTPRGRYSVELHLS
Sbjct:    1 MTDGHHFNNILLGGRGGTNPGQFKVHSGGLAWKRQGGGKTIEIDKADVTAVTWMKVPRAYQLGVRIKAGLFYRFIGFREQDVSNLTNFIQKNMGVTPDEKQLSVSGQNWGGIDIDGNMLTFMVGSKQAFEVSLPDVAQTQMQGKTDVLLELHVDDTTGANEKDSLMDLSFHVPTSNTQFVGDESRPPAHILWETILKFADVGS-SEEPVVTFEGIAILTPRGRYSVELHLS 230          
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSP1B_ORYSJ (FACT complex subunit SSRP1-B OS=Oryza sativa subsp. japonica GN=SSRP1-B PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 7.602e-95
Identity = 163/231 (70.56%), Postives = 195/231 (84.42%), Query Frame = 1
Query:   31 MTDGPFFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLS 723
            MTDG  FNNISLGGRGG NPGQ K+YSG ++WK+ GGGK +EV+K DI  VTWM +PR+ QLGV TK+GL+Y+F GFR+QD+++LTNF + N  I+PEEKQLSV G NWG +++NGNML+F VG K+AFEVSLADV+QTQ+QGK DV+LEFHVDDTTG NEKDSLM++SFH+P SNTQF GDEN P AQV    I++ ADVG+  EEAVVTF+GIAILTPRGRYSVELHLS
Sbjct:    1 MTDGHHFNNISLGGRGGNNPGQFKLYSGGLAWKRQGGGKTIEVEKSDITSVTWMAIPRSYQLGVSTKEGLFYRFFGFREQDISSLTNFMEKNMRITPEEKQLSVGGHNWGGIEINGNMLSFNVGSKEAFEVSLADVAQTQMQGKTDVVLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFPGDENRPSAQVLWQAILNKADVGS-SEEAVVTFDGIAILTPRGRYSVELHLS 230          
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSRP1_XENLA (FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.851e-33
Identity = 81/229 (35.37%), Postives = 124/229 (54.15%), Query Frame = 1
Query:   31 MTDGPFFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELH 717
            M D   FN+I    +G  N G+L++    + +K    GK   +   DIA V W +V   + + + T  G  YK+ GFR+ +   L ++F+S+F +   EK L V G NWG V   G +L+F +G + AFE+ L++VSQ    GKN+V LEFH +D    + + SLMEI F++P +      D+     + F   ++S ADV     +AV  F  +  LTPRGRY + ++
Sbjct:    1 MADTLEFNDIYQEVKGSMNDGRLRLSRAGLMYKNNKTGKVENISAADIAEVVWRRVALGHGIKLLTNGGHVYKYDGFRETEYDKLFDYFKSHFSVELVEKDLCVKGWNWGSVRFGGQLLSFDIGDQPAFELPLSNVSQC-TTGKNEVTLEFHQND----DSEVSLMEIRFYVPPTQ-----DDGGDSVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIY 219          
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSRP1_CHICK (FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.195e-31
Identity = 76/229 (33.19%), Postives = 126/229 (55.02%), Query Frame = 1
Query:   31 MTDGPFFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELH 717
            M D   FN I    +G  N G+L++    + +K    GK   +   ++A   W +V   + L + TK+G  YK+ GFR+ +   L++FF++++ +   EK L V G NWG V   G +L+F +G++  FE+ L++VSQ    GKN+V LEFH +D    + + SLME+ F++P +      ++   P + F   ++S ADV     +A+  F  +  LTPRGRY + ++
Sbjct:    1 MADTLEFNEIYQEVKGSMNDGRLRLSRQGVIFKNSKTGKVDNIQASELAEGVWRRVALGHGLKLLTKNGHVYKYDGFRESEFDKLSDFFKAHYRLELAEKDLCVKGWNWGTVRFGGQLLSFDIGEQPVFEIPLSNVSQC-TTGKNEVTLEFHQND----DAEVSLMEVRFYVPPTQ-----EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIY 219          
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSRP1_RAT (FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30
Identity = 74/223 (33.18%), Postives = 123/223 (55.16%), Query Frame = 1
Query:   49 FNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELH 717
            FN+I    +G  N G+L++    I +K    GK   +   ++    W +V   + L + TK+G  YK+ GFR+ +   L++FF++++ +   EK L V G NWG V   G +L+F +G +  FE+ L++VSQ    GKN+V LEFH +D    + + SLME+ F++P +      ++   P + F   ++S ADV     +A+  F  +  LTPRGRY + ++
Sbjct:    7 FNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQC-TTGKNEVTLEFHQND----DAEVSLMEVRFYVPPTQ-----EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIY 219          
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSRP1_MOUSE (FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30
Identity = 74/223 (33.18%), Postives = 123/223 (55.16%), Query Frame = 1
Query:   49 FNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELH 717
            FN+I    +G  N G+L++    I +K    GK   +   ++    W +V   + L + TK+G  YK+ GFR+ +   L++FF++++ +   EK L V G NWG V   G +L+F +G +  FE+ L++VSQ    GKN+V LEFH +D    + + SLME+ F++P +      ++   P + F   ++S ADV     +A+  F  +  LTPRGRY + ++
Sbjct:    7 FNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQC-TTGKNEVTLEFHQND----DAEVSLMEVRFYVPPTQ-----EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIY 219          
The following BLAST results are available for this feature:
BLAST of FC917348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SSRP1_VICFA3.072e-11284.85FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 ... [more]
SSRP1_CATRO8.103e-10580.52FACT complex subunit SSRP1 OS=Catharanthus roseus ... [more]
SSRP1_ARATH5.807e-10379.22FACT complex subunit SSRP1 OS=Arabidopsis thaliana... [more]
SSP1A_ORYSJ1.748e-9974.46FACT complex subunit SSRP1-A OS=Oryza sativa subsp... [more]
SSRP1_MAIZE2.137e-9771.86FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE... [more]
SSP1B_ORYSJ7.602e-9570.56FACT complex subunit SSRP1-B OS=Oryza sativa subsp... [more]
SSRP1_XENLA4.851e-3335.37FACT complex subunit SSRP1 OS=Xenopus laevis GN=ss... [more]
SSRP1_CHICK1.195e-3133.19FACT complex subunit SSRP1 OS=Gallus gallus GN=SSR... [more]
SSRP1_RAT1.011e-3033.18FACT complex subunit SSRP1 OS=Rattus norvegicus GN... [more]
SSRP1_MOUSE1.011e-3033.18FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CC07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917348 ID=FC917348; Name=FC917348; organism=Citrus clementina; type=EST; length=724bp
TTTCTTTTATCGTTCACTCAATTTGCAGAGATGACCGACGGTCCCTTTTT
CAATAATATATCGCTCGGCGGCCGAGGTGGCACGAATCCTGGGCAGCTTA
AAATTTACTCGGGAAAGATTTCATGGAAGAAGCTGGGAGGTGGTAAAGCA
GTGGAAGTTGATAAAGTTGATATTGCCGGGGTTACATGGATGAAAGTCCC
TCGGACAAATCAACTTGGTGTTCGAACCAAAGATGGGTTGTACTACAAGT
TCACAGGATTTCGTGACCAGGATGTTGCTACTTTGACCAATTTTTTCCAG
TCCAATTTTGGAATATCACCTGAAGAGAAGCAACTTTCTGTCAGTGGTCG
TAATTGGGGAGAAGTTGATTTAAATGGGAACATGCTGACTTTTATGGTTG
GTCAAAAGCAAGCTTTTGAGGTATCTTTAGCAGATGTCTCGCAAACCCAA
CTTCAAGGGAAAAATGATGTCATCTTGGAGTTCCACGTCGATGACACAAC
TGGAGCTAATGAGAAAGATTCACTGATGGAGATAAGTTTTCACATCCCTA
ATTCCAACACGCAATTCGTTGGTGATGAGAATCATCCACCTGCTCAAGTT
TTTCGTGATAAAATTATGTCAATGGCTGATGTTGGTGCTGGAGGCGAAGA
AGCTGTTGTTACATTTGAGGGTATTGCAATCCTCACACCAAGGGGTCGGT
ATAGTGTTGAACTTCATCTTTCAT
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