FC917348
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSRP1_VICFA (FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1) HSP 1 Score: 404.445 bits (1038), Expect = 3.072e-112 Identity = 196/231 (84.85%), Postives = 211/231 (91.34%), Query Frame = 1 Query: 31 MTDGPFFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLS 723 MTDG FNNI+LG RGGTNPGQ+KIYSG I WK+ GGGK ++VDK DI GVTWMKVP+TNQLGV+ KDGL YKFTGFRDQDV +LTNFFQ+ FGI+ EEKQLSV+GRNWGEVDLNGNML FMVG KQAFEVSLADVSQT LQGKNDVILEFHVDDTTGANEKDSLME+SFHIP+SNTQFVGDEN P AQVFRDKIMSMADVG GGE+AVVTF+GIAILTPRGRYSVELHLS Sbjct: 1 MTDGHLFNNITLGXRGGTNPGQIKIYSGGILWKRQGGGKTIDVDKTDIMGVTWMKVPKTNQLGVQIKDGLLYKFTGFRDQDVVSLTNFFQNTFGITVEEKQLSVTGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTNLQGKNDVILEFHVDDTTGANEKDSLMEMSFHIPSSNTQFVGDENRPSAQVFRDKIMSMADVGVGGEDAVVTFDGIAILTPRGRYSVELHLS 231
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSRP1_CATRO (FACT complex subunit SSRP1 OS=Catharanthus roseus GN=SSRP1 PE=2 SV=1) HSP 1 Score: 379.793 bits (974), Expect = 8.103e-105 Identity = 186/231 (80.52%), Postives = 206/231 (89.18%), Query Frame = 1 Query: 31 MTDGPFFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLS 723 M DG FNNI+LGGRGGTNPGQL+++SG I WKK GG KAVEVDK D+ G+TWMKVPR+NQLGVR KDGL+YKFTGFRDQDVA+LT++ QS GI+PEEKQLSVSG+NWGEVDLNGNMLTF+VG KQAFEVSLADV+QTQLQGKNDV+LEF K+SLMEISFH+PNSNTQFVGDEN PPAQVFRDKIMSMADVGAGGE+AVVTFEGIAILTPRGRY+VELHLS Sbjct: 1 MADGHLFNNITLGGRGGTNPGQLRVHSGGILWKKQGGAKAVEVDKSDMVGLTWMKVPRSNQLGVRIKDGLFYKFTGFRDQDVASLTSYLQSTCGITPEEKQLSVSGKNWGEVDLNGNMLTFLVGSKQAFEVSLADVAQTQLQGKNDVMLEFMWMILLEQMRKNSLMEISFHVPNSNTQFVGDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYNVELHLS 231
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSRP1_ARATH (FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1 SV=2) HSP 1 Score: 373.629 bits (958), Expect = 5.807e-103 Identity = 183/231 (79.22%), Postives = 202/231 (87.45%), Query Frame = 1 Query: 31 MTDGPFFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLS 723 M DG FNNISL GRGG NPG LKI SG I WKK GGGKAVEVD+ DI V+W KV ++NQLGV+TKDGLYYKF GFRDQDV +L++FFQS++G +P+EKQLSVSGRNWGEVDL+GN LTF+VG KQAFEVSLADVSQTQLQGKNDV LEFHVDDT GANEKDSLMEISFHIPNSNTQFVGDEN PP+QVF D I++MADV G E+AVVTFE IAILTPRGRY+VELHLS Sbjct: 1 MADGHSFNNISLSGRGGKNPGLLKINSGGIQWKKQGGGKAVEVDRSDIVSVSWTKVTKSNQLGVKTKDGLYYKFVGFRDQDVPSLSSFFQSSYGKTPDEKQLSVSGRNWGEVDLHGNTLTFLVGSKQAFEVSLADVSQTQLQGKNDVTLEFHVDDTAGANEKDSLMEISFHIPNSNTQFVGDENRPPSQVFNDTIVAMADVSPGVEDAVVTFESIAILTPRGRYNVELHLS 231
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSP1A_ORYSJ (FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica GN=SSRP1-A PE=2 SV=1) HSP 1 Score: 362.073 bits (928), Expect = 1.748e-99 Identity = 172/231 (74.46%), Postives = 199/231 (86.15%), Query Frame = 1 Query: 31 MTDGPFFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLS 723 MTDG FNNI LGGR G+NPGQ K+YSG ++WK+ GGGK +E++K D+ VTWMKVPR QLGVRTKDGL+YKF GFR+QDV++LTNF Q N G+SP+EKQLSVSG+NWG +D+NGNMLTFMVG KQAFEVSLADVSQTQ+QGK DV+LEFHVDDTTG NEKDSLM++SFH+P SNTQF+GDEN AQV + IM +ADV + EEAVVTFEGIAILTPRGRYSVELHLS Sbjct: 1 MTDGHLFNNILLGGRAGSNPGQFKVYSGGLAWKRQGGGKTIEIEKSDLTSVTWMKVPRAYQLGVRTKDGLFYKFIGFREQDVSSLTNFMQKNMGLSPDEKQLSVSGQNWGGIDINGNMLTFMVGSKQAFEVSLADVSQTQMQGKTDVLLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFLGDENRTAAQVLWETIMGVADVDS-SEEAVVTFEGIAILTPRGRYSVELHLS 230
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSRP1_MAIZE (FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1) HSP 1 Score: 355.14 bits (910), Expect = 2.137e-97 Identity = 166/231 (71.86%), Postives = 196/231 (84.85%), Query Frame = 1 Query: 31 MTDGPFFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLS 723 MTDG FNNI LGGRGGTNPGQ K++SG ++WK+ GGGK +E+DK D+ VTWMKVPR QLGVR K GL+Y+F GFR+QDV+ LTNF Q N G++P+EKQLSVSG+NWG +D++GNMLTFMVG KQAFEVSL DV+QTQ+QGK DV+LE HVDDTTGANEKDSLM++SFH+P SNTQFVGDE+ PPA + + I+ ADVG+ EE VVTFEGIAILTPRGRYSVELHLS Sbjct: 1 MTDGHHFNNILLGGRGGTNPGQFKVHSGGLAWKRQGGGKTIEIDKADVTAVTWMKVPRAYQLGVRIKAGLFYRFIGFREQDVSNLTNFIQKNMGVTPDEKQLSVSGQNWGGIDIDGNMLTFMVGSKQAFEVSLPDVAQTQMQGKTDVLLELHVDDTTGANEKDSLMDLSFHVPTSNTQFVGDESRPPAHILWETILKFADVGS-SEEPVVTFEGIAILTPRGRYSVELHLS 230
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSP1B_ORYSJ (FACT complex subunit SSRP1-B OS=Oryza sativa subsp. japonica GN=SSRP1-B PE=2 SV=1) HSP 1 Score: 346.665 bits (888), Expect = 7.602e-95 Identity = 163/231 (70.56%), Postives = 195/231 (84.42%), Query Frame = 1 Query: 31 MTDGPFFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLS 723 MTDG FNNISLGGRGG NPGQ K+YSG ++WK+ GGGK +EV+K DI VTWM +PR+ QLGV TK+GL+Y+F GFR+QD+++LTNF + N I+PEEKQLSV G NWG +++NGNML+F VG K+AFEVSLADV+QTQ+QGK DV+LEFHVDDTTG NEKDSLM++SFH+P SNTQF GDEN P AQV I++ ADVG+ EEAVVTF+GIAILTPRGRYSVELHLS Sbjct: 1 MTDGHHFNNISLGGRGGNNPGQFKLYSGGLAWKRQGGGKTIEVEKSDITSVTWMAIPRSYQLGVSTKEGLFYRFFGFREQDISSLTNFMEKNMRITPEEKQLSVGGHNWGGIEINGNMLSFNVGSKEAFEVSLADVAQTQMQGKTDVVLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFPGDENRPSAQVLWQAILNKADVGS-SEEAVVTFDGIAILTPRGRYSVELHLS 230
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSRP1_XENLA (FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 4.851e-33 Identity = 81/229 (35.37%), Postives = 124/229 (54.15%), Query Frame = 1 Query: 31 MTDGPFFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELH 717 M D FN+I +G N G+L++ + +K GK + DIA V W +V + + + T G YK+ GFR+ + L ++F+S+F + EK L V G NWG V G +L+F +G + AFE+ L++VSQ GKN+V LEFH +D + + SLMEI F++P + D+ + F ++S ADV +AV F + LTPRGRY + ++ Sbjct: 1 MADTLEFNDIYQEVKGSMNDGRLRLSRAGLMYKNNKTGKVENISAADIAEVVWRRVALGHGIKLLTNGGHVYKYDGFRETEYDKLFDYFKSHFSVELVEKDLCVKGWNWGSVRFGGQLLSFDIGDQPAFELPLSNVSQC-TTGKNEVTLEFHQND----DSEVSLMEIRFYVPPTQ-----DDGGDSVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIY 219
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSRP1_CHICK (FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 1.195e-31 Identity = 76/229 (33.19%), Postives = 126/229 (55.02%), Query Frame = 1 Query: 31 MTDGPFFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELH 717 M D FN I +G N G+L++ + +K GK + ++A W +V + L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+F +G++ FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P + ++ P + F ++S ADV +A+ F + LTPRGRY + ++ Sbjct: 1 MADTLEFNEIYQEVKGSMNDGRLRLSRQGVIFKNSKTGKVDNIQASELAEGVWRRVALGHGLKLLTKNGHVYKYDGFRESEFDKLSDFFKAHYRLELAEKDLCVKGWNWGTVRFGGQLLSFDIGEQPVFEIPLSNVSQC-TTGKNEVTLEFHQND----DAEVSLMEVRFYVPPTQ-----EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIY 219
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSRP1_RAT (FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30 Identity = 74/223 (33.18%), Postives = 123/223 (55.16%), Query Frame = 1 Query: 49 FNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELH 717 FN+I +G N G+L++ I +K GK + ++ W +V + L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+F +G + FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P + ++ P + F ++S ADV +A+ F + LTPRGRY + ++ Sbjct: 7 FNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQC-TTGKNEVTLEFHQND----DAEVSLMEVRFYVPPTQ-----EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIY 219
BLAST of FC917348 vs. ExPASy Swiss-Prot
Match: SSRP1_MOUSE (FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30 Identity = 74/223 (33.18%), Postives = 123/223 (55.16%), Query Frame = 1 Query: 49 FNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELH 717 FN+I +G N G+L++ I +K GK + ++ W +V + L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+F +G + FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P + ++ P + F ++S ADV +A+ F + LTPRGRY + ++ Sbjct: 7 FNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQC-TTGKNEVTLEFHQND----DAEVSLMEVRFYVPPTQ-----EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIY 219 The following BLAST results are available for this feature:
BLAST of FC917348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC917348 ID=FC917348; Name=FC917348; organism=Citrus clementina; type=EST; length=724bpback to top |