FC917767

Overview
NameFC917767
Unique NameFC917767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length886
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC917767 vs. ExPASy Swiss-Prot
Match: ESCA_ARATH (Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.174e-25
Identity = 63/148 (42.57%), Postives = 91/148 (61.49%), Query Frame = 3 
Query:  459 ITREPEPGMSPYILEVPGGNDVVETISNFCRRKNIGICVLTGSGTVANVTLRQPSATPGS---------TITFHGRFDILSISATFLPQNAAYPPLPNIFAISLAGPQGQIVGGSVVRPLLXXXXXXXXXXXXNNPSYHRLPVQDEQQ 875
            +TR+    +  ++LEV  G D+VE++S + RR+  G+ VL G+GTV+NVTLRQP  TPG+          +T HGRF+ILS++ T LP  A  PP     +I LAG QGQ+VGGSVV PL+            +N  + RLP+++E++
Sbjct:  105 VTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQP-VTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPA--PPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASFSNAVFERLPIEEEEE 249
The following BLAST results are available for this feature:
BLAST of FC917767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ESCA_ARATH5.174e-2542.57Putative DNA-binding protein ESCAROLA OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA58BF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917767 ID=FC917767; Name=FC917767; organism=Citrus clementina; type=EST; length=886bp
CATCAAACCCCATTAAAAATATTAAACCCCCAAAACCCCTCCCCCCCAAA
AAAAAGAGGGTTATAATTTAAAAGAAAATAAAACCCAAAAAAATAAAGAG
CATGAAAAGTGATTATGTAGTAGAACCCAAAAACGCAAACTCTCAAACCA
TGTTCTCGAAACTTCATCACCACCAGCAGCAACAACACCATCCTTTCTCT
CATCACTTCCAGCTCTCACGTGACTCTCAGGCCTCCGAGGAAGACACCAA
CAGCCACAACTCCCCTGTTACCACTCCTCCAACCACCAACCCCGCCGCCG
CCGCCGCTAAATCAAGACAACAACAACAACAACAACAACAACAACAACAG
CTTCAGGAACCCACCACCACCGGAGGGGATGGTGCTACTATCGAAGTCGT
CCGCCGCCCTAGGGGCAGACCCCCTGGCTCCAAGAACAAGCCCAAGCCTC
CTGTTTATATCACCCGCGAGCCAGAACCCGGCATGAGCCCTTACATTCTC
GAAGTCCCCGGCGGAAACGACGTCGTGGAGACCATCTCCAACTTCTGCAG
GCGCAAGAACATCGGTATCTGCGTGCTCACCGGGTCGGGCACCGTCGCTA
ACGTTACCCTCCGTCAGCCCTCCGCGACTCCTGGGTCCACCATCACGTTC
CACGGGAGGTTCGACATTCTCTCGATCTCCGCGACGTTCTTGCCCCAAAA
CGCAGCGTATCCGCCCTTGCCCAACATATTCGCGATATCTCTGGCTGGGC
CGCAGGGGCAGATCGTGGGTGGATCCGTGGTGAGACCGCTGCTGGCTGTT
GGGACGGTGTTCGTGGTGGCCGCTACATTTAACAACCCGTCGTATCACCG
GCTGCCGGTGCAGGACGAGCAGCAAAGGACTTCAGT
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