FC917777

Overview
NameFC917777
Unique NameFC917777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length929
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917777 vs. ExPASy Swiss-Prot
Match: UBC32_ARATH (Ubiquitin carrier protein E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 1.132e-102
Identity = 196/289 (67.82%), Postives = 219/289 (75.78%), Query Frame = 1
Query:   82 MAEGRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAP--PVPQLSTCEEQPG-NREGEAQASSIDAMVAGAGEGLPAP---VGDRIIEEVQEDLPASMNPNPVVAG-TSREVPANASGVQLQPKPETRGQKPADDRLFTWAAVGLTIAILVL 927
            MA+ RYN KNPAVKRILQEVKEMQ+NPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA+YPFKPPSFMLLTPNGRFET TKICLSISN+HPEHWQPSWSVRTALVALIAFMPT+PNGALGS+DY K+ERR LAIKSRE  PK+G+PERQK+IDEIH+Y+LSKA   P P    C + P    E  +Q    +A+       +      V D+IIEE  E +  + +  P  A   + EV   AS    Q       QKP DDRLFTWAAVGLTIAI+VL
Sbjct:    1 MADERYNRKNPAVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPADYPFKPPSFMLLTPNGRFETNTKICLSISNYHPEHWQPSWSVRTALVALIAFMPTSPNGALGSVDYPKDERRTLAIKSRETPPKYGSPERQKIIDEIHQYILSKATVVPKPLPLECSQAPSIVSEAHSQVEPQEAITVVEERSIATTDTIVDDQIIEETAEAVNTAASVVPAAAPLPAVEVVVKASVSGEQRMARRAAQKPVDDRLFTWAAVGLTIAIMVL 289          
BLAST of FC917777 vs. ExPASy Swiss-Prot
Match: UB2J1_MOUSE (Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus GN=Ube2j1 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.658e-53
Identity = 116/268 (43.28%), Postives = 159/268 (59.33%), Query Frame = 1
Query:   88 EGRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE-AAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTCEEQPGNREGEAQASSIDAMVAGAGEGLPAPVGDRI--IEEVQEDLPASMNPNPVVAGTSREVPANASGVQ-LQPKPETRGQKPADDR 879
            E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHGRI LP EYP KPPS +LLT NGRFE   KICLSIS HHPE WQPSWS+RTAL+A+I FMPT   GA+GSLDY  EERRALA KS++      G+  +  L+            P+   S   +     +  A+  S  A V  +G+ +     ++   + + Q+DLP +            + P+ A   Q  QP P+     P   R
Sbjct:    2 ETRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVLL------------PLKSGSGSSQADQEAKELARQISFKAEVNSSGKTIAESDLNQCFSLNDSQDDLPTTFQGATASTSYGAQNPSGAPLPQPTQPAPKNTSMSPRQRR 256          
BLAST of FC917777 vs. ExPASy Swiss-Prot
Match: UB2J1_HUMAN (Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens GN=UBE2J1 PE=1 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 2.828e-53
Identity = 95/146 (65.07%), Postives = 119/146 (81.51%), Query Frame = 1
Query:   88 EGRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 525
            E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHGRI LP EYP KPPS +LLT NGRFE   KICLSIS HHPE WQPSWS+RTAL+A+I FMPT   GA+GSLDY  EERRALA KS++
Sbjct:    2 ETRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERRALAKKSQD 146          
BLAST of FC917777 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata GN=UBC6 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.107e-32
Identity = 62/135 (45.93%), Postives = 90/135 (66.67%), Query Frame = 1
Query:  115 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKS 519
            A KR+ +E K M  NP    ++ P EENI EW + I GP DT ++GG YHG +  P++YP+KPP+  ++TPNGRF+  T++CLS+S++HP+ W P WSV T L  L++FM T      GS+   ++E++ LA KS
Sbjct:    6 AQKRLTKEYKMMVENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFM-TGDESTTGSITTTQQEKKILAKKS 139          
BLAST of FC917777 vs. ExPASy Swiss-Prot
Match: UBC6_ASHGO (Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii GN=UBC6 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.973e-31
Identity = 60/137 (43.80%), Postives = 88/137 (64.23%), Query Frame = 1
Query:  115 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 525
            A KR+ +E K M  NP    ++ P E+NI  W + I GP +T +E G YHG +  P +YPF PP+  +LTPNGRF   T++CLS+S++HP+ W PSWSV T L  L++FM T+   ++G+++     +R  A KS+E
Sbjct:    6 AYKRLSKEYKMMTENPPPYIVAAPKEDNILVWHYVITGPPETPYEDGQYHGTLVFPNDYPFNPPAIRMLTPNGRFRENTRLCLSMSDYHPDTWNPSWSVATILTGLLSFMTTD-ESSIGTMESTDSTKRKYAAKSKE 141          
BLAST of FC917777 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.777e-31
Identity = 59/135 (43.70%), Postives = 88/135 (65.19%), Query Frame = 1
Query:  115 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKS 519
            A KR+ +E K M  NP    ++ P E+NI EW + I GP DT ++GG YHG +  P++YP+KPP+  ++TPNGRF+  T++CLS+S++HP+ W P WSV T L  L++FM T+     GS+     +++ LA  S
Sbjct:    6 AHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKPNTRLCLSMSDYHPDTWNPGWSVSTILNGLLSFM-TSDEATTGSITTSDHQKKTLARNS 139          
BLAST of FC917777 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.851e-31
Identity = 60/136 (44.12%), Postives = 89/136 (65.44%), Query Frame = 1
Query:  115 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSR 522
            A KR+ +E K + +NP    ++ P E+NI EW + I GP  T +E G YHG +  P++YPF PP+  ++TPNGRF+  T++CLS+S++HPE W P+WSV T L  L++FM T      GS+    +++R LA KS+
Sbjct:    6 ANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMITPNGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFM-TGDEQTTGSVSTSDKDKRTLAKKSK 140          
BLAST of FC917777 vs. ExPASy Swiss-Prot
Match: UBC6_DEBHA (Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii GN=UBC6 PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.575e-30
Identity = 61/135 (45.19%), Postives = 85/135 (62.96%), Query Frame = 1
Query:  121 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 525
            KR+ +E K +  NP     + P +ENI EW + I GP  T FE G YHG ++ P+EYPFKPPS  ++TPNGRF   T++CLS+S++HP+ W P+WSV T L  L++FM T      GS+      ++ LA  S+E
Sbjct:    8 KRLTKEYKAITLNPPPYVSAKPNDENILEWHYVITGPPHTPFEEGQYHGILRFPSEYPFKPPSISMITPNGRFACNTRLCLSMSDYHPDTWNPAWSVATILTGLLSFM-TGDESTTGSITTSDNVKKRLARSSKE 141          
BLAST of FC917777 vs. ExPASy Swiss-Prot
Match: UBC6_SCHPO (Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe GN=ubc6 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.393e-30
Identity = 60/132 (45.45%), Postives = 84/132 (63.64%), Query Frame = 1
Query:  115 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALA 510
            A KR+++E   +Q NP +   + P  ENI EW + I GP DT +EGG YHG +  P +YPFKPP+  ++TP+GRF+T T++CLS S+ HP+ W PSW V T LV L++FM T+     G +   +  RR  A
Sbjct:    6 AYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITPSGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFM-TSDEITTGGIVTSESTRRTYA 136          
BLAST of FC917777 vs. ExPASy Swiss-Prot
Match: UB2JL_DICDI (Ubiquitin-conjugating enzyme E2 J2-like OS=Dictyostelium discoideum GN=DDB_G0294380 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.737e-30
Identity = 62/152 (40.79%), Postives = 95/152 (62.50%), Query Frame = 1
Query:   82 MAEGRYNLKNPAVK----RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 525
            M+E   ++ +P  K    R+ +E +E+  NP ++ +  P   NI EW + I G  +T +EGG+Y+G++     YP  PPS ++ TP+GRFETQ ++CLSIS++HPE W PSWS  + L+ L++FM  N   A GS+    +E+R LA KS +
Sbjct:    1 MSEHNSDIVHPPTKDCITRLKREFQEISKNPIENILVTPSPSNILEWHYVILGASNTPYEGGVYYGQLIFKYNYPLSPPSILMTTPSGRFETQKRLCLSISDYHPESWSPSWSTSSILLGLLSFMSDNEVTA-GSIVTTNDEKRILATKSMD 151          
The following BLAST results are available for this feature:
BLAST of FC917777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
UBC32_ARATH1.132e-10267.82Ubiquitin carrier protein E2 32 OS=Arabidopsis tha... [more]
UB2J1_MOUSE1.658e-5343.28Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus... [more]
UB2J1_HUMAN2.828e-5365.07Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens... [more]
UBC6_CANGA2.107e-3245.93Ubiquitin-conjugating enzyme E2 6 OS=Candida glabr... [more]
UBC6_ASHGO3.973e-3143.80Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossyp... [more]
UBC6_YEAST6.777e-3143.70Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]
UBC6_KLULA8.851e-3144.12Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]
UBC6_DEBHA2.575e-3045.19Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces ... [more]
UBC6_SCHPO4.393e-3045.45Ubiquitin-conjugating enzyme E2 6 OS=Schizosacchar... [more]
UB2JL_DICDI5.737e-3040.79Ubiquitin-conjugating enzyme E2 J2-like OS=Dictyos... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA12AF12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917777 ID=FC917777; Name=FC917777; organism=Citrus clementina; type=EST; length=929bp
AAGACTTTTGTCTGCTCGTTCGCATACAAAGTCCTGATAGGACGGTGGAC
GTGAACCGATCGAAATCAGATCTGAAATCCAATGGCGGAAGGCAGGTACA
ATTTGAAAAATCCAGCGGTGAAGAGAATCCTACAGGAGGTCAAAGAGATG
CAATCAAATCCGTCAGATGATTTCATGAGCCTCCCTCTCGAGGAGAATAT
ATTTGAATGGCAATTTGCGATCAGGGGACCGGGTGATACTGAATTTGAAG
GTGGGATTTATCATGGTCGGATTCAGTTACCTGCAGAATACCCATTCAAG
CCTCCTTCATTTATGCTCTTAACACCAAATGGGCGTTTTGAAACTCAGAC
CAAAATATGCTTAAGCATTTCGAATCATCATCCGGAGCACTGGCAACCAT
CTTGGAGTGTGAGGACTGCTCTTGTAGCACTAATTGCTTTCATGCCCACC
AATCCAAATGGTGCTTTGGGCTCACTAGATTATAAGAAGGAAGAGAGGCG
TGCTCTGGCCATCAAATCTCGTGAAGCTGCCCCAAAATTTGGGACTCCTG
AACGTCAAAAACTCATTGATGAGATCCATGAATATATGTTAAGCAAGGCA
CCCCCTGTCCCTCAGCTCAGCACCTGTGAAGAACAGCCTGGCAACAGGGA
GGGTGAAGCACAGGCAAGTTCCATAGACGCCATGGTTGCGGGTGCCGGGG
AAGGGCTCCCAGCCCCAGTAGGTGATAGGATTATTGAAGAAGTTCAGGAG
GATCTTCCTGCCAGCATGAATCCCAACCCCGTAGTGGCTGGAACATCAAG
AGAGGTTCCTGCCAACGCCTCTGGAGTCCAGCTTCAGCCAAAACCGGAGA
CTAGGGGTCAAAAACCTGCTGATGATCGACTGTTCACATGGGCTGCTGTT
GGACTTACTATTGCAATTTTGGTTCTTTT
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