FC917843

Overview
NameFC917843
Unique NameFC917843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: DCR1B_CHICK (DNA cross-link repair 1B protein OS=Gallus gallus GN=DCLRE1B PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.728e-27
Identity = 75/162 (46.30%), Postives = 99/162 (61.11%), Query Frame = 3
Query:  135 ISVDRWTE----GSQVYFLTHLHLDHTQGLSSAWARGPLFCSRLTAKLFP--LKFPGLDLSLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLFREAFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNPSYAFPSR 602
            I+VD W+     G++++FL+H+H DHT GLSS W+R PL+CS LTA+L    LK P      IR L++G  H++       GE+  V V+ +DA+HCPGSVM LF  AFG +LYTGDFR+  + +R          AL    +D LYLDNT C P  A PSR
Sbjct:   11 IAVDFWSVRRAGGARLFFLSHMHSDHTVGLSSTWSR-PLYCSPLTARLLHHRLKVP---TRWIRPLEVGQSHAV-------GEE--VTVTLLDANHCPGSVMFLFEGAFGTILYTGDFRYSPAMQRE--------PALSGRRIDRLYLDNTNCRPHGALPSR 151          
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: DCR1B_MOUSE (DNA cross-link repair 1B protein OS=Mus musculus GN=Dclre1b PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.732e-24
Identity = 68/161 (42.24%), Postives = 94/161 (58.39%), Query Frame = 3
Query:  135 ISVDRWT----EGSQVYFLTHLHLDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLFREAFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNPSYAFPSRE 605
            I+VD W+      ++++FLTH+H DHT GLSS WAR PL+CS +TA L   +   +    IR L++G  H + +     G++T   V+ IDA+HCPGSVM LF   FG +LYTGDFR+  S  +           +    +  LYLDNT CNP+   PSR+
Sbjct:   11 IAVDFWSLRRAGSARLFFLTHMHCDHTVGLSSTWAR-PLYCSPITACLLHRRLQ-VSKHWIRALEVGESHVLPL--DEIGQETMT-VTLIDANHCPGSVMFLFEGYFGTILYTGDFRYTPSMLKEP-------ALILGKQIHTLYLDNTNCNPALVLPSRQ 159          
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: DCR1B_HUMAN (DNA cross-link repair 1B protein OS=Homo sapiens GN=DCLRE1B PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.265e-23
Identity = 68/161 (42.24%), Postives = 95/161 (59.01%), Query Frame = 3
Query:  135 ISVDRWT----EGSQVYFLTHLHLDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLFREAFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNPSYAFPSRE 605
            I+VD W+      ++++FL+H+H DHT GLSS WAR PL+CS +TA L       +    I+ L++G  H + +     G++T   V+ +DA+HCPGSVM LF   FG +LYTGDFR+  S  +      TL K      +  LYLDNT CNP+   PSR+
Sbjct:   11 IAVDFWSLRRAGTARLFFLSHMHSDHTVGLSSTWAR-PLYCSPITAHLLHRHLQ-VSKQWIQALEVGESHVLPL--DEIGQETMT-VTLLDANHCPGSVMFLFEGYFGTILYTGDFRYTPSMLKEP--ALTLGKQ-----IHTLYLDNTNCNPALVLPSRQ 159          
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: SNM1_ARATH (DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana GN=SNM1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.715e-22
Identity = 65/182 (35.71%), Postives = 95/182 (52.20%), Query Frame = 3
Query:   75 SLSIEKPPPLISCTKMEKGLISVDRW----TEGSQVYFLTHLHLDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLFREAFG-CLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNPSYAFPSRE 605
            S S + P P     K+     +VD +     +G   YFLTH H DH  GL+ AW+ GP++CS LT++L  L    ++ S I  L++   ++I            ++V+ I+A+HCPG+ +  FR   G C L+TGDFR     +   +        L +  V +LYLD TYCNP Y FPS+E
Sbjct:  136 SFSNDSPRPCPFYKKLPGTPFTVDAFRYGCVQGCSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLLRLSL-SVNPSSIHPLELDVEYTI----------NGIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRASKQMQTHPL--------LFNQRVHVLYLDTTYCNPRYKFPSKE 298          
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: DCR1A_MOUSE (DNA cross-link repair 1A protein OS=Mus musculus GN=Dclre1a PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.567e-17
Identity = 58/152 (38.16%), Postives = 80/152 (52.63%), Query Frame = 3
Query:  156 EGSQVYFLTHLHLDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLFREAFGC-LLYTGDFRWEASNERAEI-GRNTLVKALKDDVVDILYLDNTYCNPSYAFPSRE 605
            EG   YFLTH H DH  GLS  + R P++CS +T  L   K   +    IR L + +   +            V+V  +DA+HCPG+ M LF+   G  +L+TGDFR + S ER+ + GR           V  L+LD TYC+P Y FPS++
Sbjct:  709 EGCTAYFLTHFHSDHYAGLSKDFTR-PVYCSEITGNLLKKKLR-VQEQYIRQLPMDTECVV----------DSVKVVLLDANHCPGATMILFQLPNGAVILHTGDFRADPSMERSRLAGRK----------VHTLFLDTTYCSPEYTFPSQQ 838          
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: DCR1A_HUMAN (DNA cross-link repair 1A protein OS=Homo sapiens GN=DCLRE1A PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.965e-17
Identity = 58/151 (38.41%), Postives = 78/151 (51.66%), Query Frame = 3
Query:  156 EGSQVYFLTHLHLDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLFREAFG-CLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNPSYAFPSRE 605
            EG   YFLTH H DH  GLS  +   P++CS +T  L   K   +    I  L + +   +            V+V  +DA+HCPG+VM LF    G  +L+TGDFR + S ER+          L D  V +LYLD TYC+P Y FPS++
Sbjct:  723 EGCTAYFLTHFHSDHYAGLSKHFT-FPVYCSEITGNLLKNKL-HVQEQYIHPLPLDTECIV----------NGVKVVLLDANHCPGAVMILFYLPNGTVILHTGDFRADPSMERS---------LLADQKVHMLYLDTTYCSPEYTFPSQQ 852          
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: DCR1_DICDI (DNA cross-link repair 1 protein OS=Dictyostelium discoideum GN=dclre1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.960e-16
Identity = 53/152 (34.87%), Postives = 76/152 (50.00%), Query Frame = 3
Query:  171 YFLTHLHLDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLF--------REAFG--CLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNPSYAFP 596
            YFLTH H DH  G++  W+ G ++C+  T KL   K  G+D   I   +   W+ +  +         V+V+ +D++HCPGS + LF         E  G   +L+TGDFR+  S     +        LK   +  LYLDNTYC+P Y FP
Sbjct:  286 YFLTHFHSDHYVGITKTWSFGNIYCTEETGKLVSHKL-GVDQRYIVKCE---WNKLIEIQG-------VKVAFLDSNHCPGSALILFIIPLRNKDGEIIGEESILHTGDFRYNQSMNNYPL--------LKGRTISKLYLDNTYCDPQYVFP 418          
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: DCR1C_RAT (Protein artemis OS=Rattus norvegicus GN=Dclre1c PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.960e-16
Identity = 63/174 (36.21%), Postives = 95/174 (54.60%), Query Frame = 3
Query:  135 ISVDRWTEGS---QVYFLTHLHLDHTQGLSSAWARGPL--------FCSRLTAKLFPLKFPGLDL--SLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLFREAFGCLLYTGDFRWEASNERAEIGRNTLVKA---LKDDVVDILYLDNTYCNPS-YAFPSRE 605
            IS+DR+   +   + YFL+H H DH +GL +   +  L        +CS +T +L  L  P      + I  ++I +   + +V  +SGEK  V V+ + A HCPGSVM LF+ + G +LYTGDFR      + E+ R  L+ +   +KD  +  +YLD T+C+P  Y  PSRE
Sbjct:   14 ISIDRFDRENLKARAYFLSHCHKDHMKGLRAPSMKRRLECSLKVFLYCSPVTKELL-LTSPKYKFWENRIIAIEIETPTQVSLVDEASGEKEEVVVTLLPAGHCPGSVMFLFQGSNGTVLYTGDFRL----AKGEVSRMELLHSGGRVKD--IQSVYLDTTFCDPRFYQIPSRE 180          
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: DCR1C_CHICK (Protein artemis OS=Gallus gallus GN=DCLRE1C PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.960e-16
Identity = 61/171 (35.67%), Postives = 94/171 (54.97%), Query Frame = 3
Query:  135 ISVDRWTEGS---QVYFLTHLHLDHTQGLSSAWARG--------PLFCSRLTAKLFPL--KFPGLDLSLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLFREAFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNPS-YAFPSRE 605
            +S+DR+   +   + YFL+H H DH +GL +   R          L+CS +T +L     K+   +  ++  L++ +   I +V  ++GEK  +EV+ + A HCPGSVM LF+   G +LYTGDFR  A  E A +       ++KD  +  +YLD T+C+P  Y  PSRE
Sbjct:   14 LSIDRFDYDNLRARAYFLSHCHKDHMKGLRAPALRRRLQSSLKVKLYCSPVTKELLLTNSKYAFWENHIV-ALEVETPTQISLVDETTGEKEDIEVTLLPAGHCPGSVMFLFQGENGTVLYTGDFRL-AKGEAARMELLHSGTSVKD--IQSVYLDTTFCDPRFYHIPSRE 180          
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: DCR1C_MOUSE (Protein artemis OS=Mus musculus GN=Dclre1c PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 64/174 (36.78%), Postives = 94/174 (54.02%), Query Frame = 3
Query:  135 ISVDRWTEGS---QVYFLTHLHLDHTQGLSSAWARGPL--------FCSRLTAKLFPLKFPGLDL--SLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLFREAFGCLLYTGDFRWEASNERAEIGRNTLVKA---LKDDVVDILYLDNTYCNPS-YAFPSRE 605
            IS+DR+   +   + YFL+H H DH +GL +   +  L        +CS +T +L  L  P      + I  ++I +   I +V  +SGEK  V V+ + A HCPGSVM LF+ + G +LYTGDFR      + E  R  L+ +   +KD  +  +YLD T+C+P  Y  PSRE
Sbjct:   14 ISIDRFDRENLKARAYFLSHCHKDHMKGLRAPSLKRRLECSLKVFLYCSPVTKELL-LTSPKYRFWENRIITIEIETPTQISLVDEASGEKEEVVVTLLPAGHCPGSVMFLFQGSNGTVLYTGDFRL----AKGEASRMELLHSGGRVKD--IQSVYLDTTFCDPRFYQIPSRE 180          
The following BLAST results are available for this feature:
BLAST of FC917843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
DCR1B_CHICK3.728e-2746.30DNA cross-link repair 1B protein OS=Gallus gallus ... [more]
DCR1B_MOUSE1.732e-2442.24DNA cross-link repair 1B protein OS=Mus musculus G... [more]
DCR1B_HUMAN4.265e-2342.24DNA cross-link repair 1B protein OS=Homo sapiens G... [more]
SNM1_ARATH4.715e-2235.71DNA cross-link repair protein SNM1 OS=Arabidopsis ... [more]
DCR1A_MOUSE4.567e-1738.16DNA cross-link repair 1A protein OS=Mus musculus G... [more]
DCR1A_HUMAN5.965e-1738.41DNA cross-link repair 1A protein OS=Homo sapiens G... [more]
DCR1_DICDI2.960e-1634.87DNA cross-link repair 1 protein OS=Dictyostelium d... [more]
DCR1C_RAT2.960e-1636.21Protein artemis OS=Rattus norvegicus GN=Dclre1c PE... [more]
DCR1C_CHICK2.960e-1635.67Protein artemis OS=Gallus gallus GN=DCLRE1C PE=2 S... [more]
DCR1C_MOUSE8.613e-1636.78Protein artemis OS=Mus musculus GN=Dclre1c PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CD04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917843 ID=FC917843; Name=FC917843; organism=Citrus clementina; type=EST; length=606bp
CACGGGTAACGGGTTCACTCATCCATAAAGGCTGAAAAATATTTGAAATT
TCAAAAATACAGCCGTTTTAATTCTCCCTCTCAATTGAGAAACCGCCACC
GCTGATCTCATGCACAAAAATGGAGAAAGGCCTGATCTCGGTGGATCGAT
GGACAGAAGGAAGTCAGGTTTACTTTTTAACTCACCTACACTTGGACCAC
ACCCAAGGCCTGAGCTCGGCGTGGGCGAGGGGCCCACTCTTCTGCTCGCG
ACTCACCGCCAAGCTCTTCCCCCTCAAGTTCCCCGGCTTGGACCTCTCGT
TGATTCGCGTCCTCGATATCGGTTCGTGGCATTCGATCTTCGTGGTCTCG
CCGTCTTCCGGAGAGAAGACGTTTGTCGAAGTTAGCGCAATTGACGCTCA
CCATTGTCCCGGCTCGGTGATGCCGTTATTTCGCGAAGCATTTGGATGCC
TGCTCTATACTGGTGATTTTCGCTGGGAAGCAAGTAATGAGAGGGCCGAG
ATAGGAAGGAACACGCTCGTCAAAGCTTTAAAAGATGATGTAGTCGACAT
TCTTTATTTAGATAACACATATTGCAATCCATCATATGCTTTTCCTTCAC
GAGAAG
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