FC917843
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: DCR1B_CHICK (DNA cross-link repair 1B protein OS=Gallus gallus GN=DCLRE1B PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.728e-27 Identity = 75/162 (46.30%), Postives = 99/162 (61.11%), Query Frame = 3 Query: 135 ISVDRWTE----GSQVYFLTHLHLDHTQGLSSAWARGPLFCSRLTAKLFP--LKFPGLDLSLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLFREAFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNPSYAFPSR 602 I+VD W+ G++++FL+H+H DHT GLSS W+R PL+CS LTA+L LK P IR L++G H++ GE+ V V+ +DA+HCPGSVM LF AFG +LYTGDFR+ + +R AL +D LYLDNT C P A PSR Sbjct: 11 IAVDFWSVRRAGGARLFFLSHMHSDHTVGLSSTWSR-PLYCSPLTARLLHHRLKVP---TRWIRPLEVGQSHAV-------GEE--VTVTLLDANHCPGSVMFLFEGAFGTILYTGDFRYSPAMQRE--------PALSGRRIDRLYLDNTNCRPHGALPSR 151
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: DCR1B_MOUSE (DNA cross-link repair 1B protein OS=Mus musculus GN=Dclre1b PE=2 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 1.732e-24 Identity = 68/161 (42.24%), Postives = 94/161 (58.39%), Query Frame = 3 Query: 135 ISVDRWT----EGSQVYFLTHLHLDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLFREAFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNPSYAFPSRE 605 I+VD W+ ++++FLTH+H DHT GLSS WAR PL+CS +TA L + + IR L++G H + + G++T V+ IDA+HCPGSVM LF FG +LYTGDFR+ S + + + LYLDNT CNP+ PSR+ Sbjct: 11 IAVDFWSLRRAGSARLFFLTHMHCDHTVGLSSTWAR-PLYCSPITACLLHRRLQ-VSKHWIRALEVGESHVLPL--DEIGQETMT-VTLIDANHCPGSVMFLFEGYFGTILYTGDFRYTPSMLKEP-------ALILGKQIHTLYLDNTNCNPALVLPSRQ 159
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: DCR1B_HUMAN (DNA cross-link repair 1B protein OS=Homo sapiens GN=DCLRE1B PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.265e-23 Identity = 68/161 (42.24%), Postives = 95/161 (59.01%), Query Frame = 3 Query: 135 ISVDRWT----EGSQVYFLTHLHLDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLFREAFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNPSYAFPSRE 605 I+VD W+ ++++FL+H+H DHT GLSS WAR PL+CS +TA L + I+ L++G H + + G++T V+ +DA+HCPGSVM LF FG +LYTGDFR+ S + TL K + LYLDNT CNP+ PSR+ Sbjct: 11 IAVDFWSLRRAGTARLFFLSHMHSDHTVGLSSTWAR-PLYCSPITAHLLHRHLQ-VSKQWIQALEVGESHVLPL--DEIGQETMT-VTLLDANHCPGSVMFLFEGYFGTILYTGDFRYTPSMLKEP--ALTLGKQ-----IHTLYLDNTNCNPALVLPSRQ 159
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: SNM1_ARATH (DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana GN=SNM1 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 4.715e-22 Identity = 65/182 (35.71%), Postives = 95/182 (52.20%), Query Frame = 3 Query: 75 SLSIEKPPPLISCTKMEKGLISVDRW----TEGSQVYFLTHLHLDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLFREAFG-CLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNPSYAFPSRE 605 S S + P P K+ +VD + +G YFLTH H DH GL+ AW+ GP++CS LT++L L ++ S I L++ ++I ++V+ I+A+HCPG+ + FR G C L+TGDFR + + L + V +LYLD TYCNP Y FPS+E Sbjct: 136 SFSNDSPRPCPFYKKLPGTPFTVDAFRYGCVQGCSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLLRLSL-SVNPSSIHPLELDVEYTI----------NGIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRASKQMQTHPL--------LFNQRVHVLYLDTTYCNPRYKFPSKE 298
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: DCR1A_MOUSE (DNA cross-link repair 1A protein OS=Mus musculus GN=Dclre1a PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 4.567e-17 Identity = 58/152 (38.16%), Postives = 80/152 (52.63%), Query Frame = 3 Query: 156 EGSQVYFLTHLHLDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLFREAFGC-LLYTGDFRWEASNERAEI-GRNTLVKALKDDVVDILYLDNTYCNPSYAFPSRE 605 EG YFLTH H DH GLS + R P++CS +T L K + IR L + + + V+V +DA+HCPG+ M LF+ G +L+TGDFR + S ER+ + GR V L+LD TYC+P Y FPS++ Sbjct: 709 EGCTAYFLTHFHSDHYAGLSKDFTR-PVYCSEITGNLLKKKLR-VQEQYIRQLPMDTECVV----------DSVKVVLLDANHCPGATMILFQLPNGAVILHTGDFRADPSMERSRLAGRK----------VHTLFLDTTYCSPEYTFPSQQ 838
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: DCR1A_HUMAN (DNA cross-link repair 1A protein OS=Homo sapiens GN=DCLRE1A PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 5.965e-17 Identity = 58/151 (38.41%), Postives = 78/151 (51.66%), Query Frame = 3 Query: 156 EGSQVYFLTHLHLDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLFREAFG-CLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNPSYAFPSRE 605 EG YFLTH H DH GLS + P++CS +T L K + I L + + + V+V +DA+HCPG+VM LF G +L+TGDFR + S ER+ L D V +LYLD TYC+P Y FPS++ Sbjct: 723 EGCTAYFLTHFHSDHYAGLSKHFT-FPVYCSEITGNLLKNKL-HVQEQYIHPLPLDTECIV----------NGVKVVLLDANHCPGAVMILFYLPNGTVILHTGDFRADPSMERS---------LLADQKVHMLYLDTTYCSPEYTFPSQQ 852
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: DCR1_DICDI (DNA cross-link repair 1 protein OS=Dictyostelium discoideum GN=dclre1 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.960e-16 Identity = 53/152 (34.87%), Postives = 76/152 (50.00%), Query Frame = 3 Query: 171 YFLTHLHLDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLF--------REAFG--CLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNPSYAFP 596 YFLTH H DH G++ W+ G ++C+ T KL K G+D I + W+ + + V+V+ +D++HCPGS + LF E G +L+TGDFR+ S + LK + LYLDNTYC+P Y FP Sbjct: 286 YFLTHFHSDHYVGITKTWSFGNIYCTEETGKLVSHKL-GVDQRYIVKCE---WNKLIEIQG-------VKVAFLDSNHCPGSALILFIIPLRNKDGEIIGEESILHTGDFRYNQSMNNYPL--------LKGRTISKLYLDNTYCDPQYVFP 418
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: DCR1C_RAT (Protein artemis OS=Rattus norvegicus GN=Dclre1c PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.960e-16 Identity = 63/174 (36.21%), Postives = 95/174 (54.60%), Query Frame = 3 Query: 135 ISVDRWTEGS---QVYFLTHLHLDHTQGLSSAWARGPL--------FCSRLTAKLFPLKFPGLDL--SLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLFREAFGCLLYTGDFRWEASNERAEIGRNTLVKA---LKDDVVDILYLDNTYCNPS-YAFPSRE 605 IS+DR+ + + YFL+H H DH +GL + + L +CS +T +L L P + I ++I + + +V +SGEK V V+ + A HCPGSVM LF+ + G +LYTGDFR + E+ R L+ + +KD + +YLD T+C+P Y PSRE Sbjct: 14 ISIDRFDRENLKARAYFLSHCHKDHMKGLRAPSMKRRLECSLKVFLYCSPVTKELL-LTSPKYKFWENRIIAIEIETPTQVSLVDEASGEKEEVVVTLLPAGHCPGSVMFLFQGSNGTVLYTGDFRL----AKGEVSRMELLHSGGRVKD--IQSVYLDTTFCDPRFYQIPSRE 180
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: DCR1C_CHICK (Protein artemis OS=Gallus gallus GN=DCLRE1C PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.960e-16 Identity = 61/171 (35.67%), Postives = 94/171 (54.97%), Query Frame = 3 Query: 135 ISVDRWTEGS---QVYFLTHLHLDHTQGLSSAWARG--------PLFCSRLTAKLFPL--KFPGLDLSLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLFREAFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNPS-YAFPSRE 605 +S+DR+ + + YFL+H H DH +GL + R L+CS +T +L K+ + ++ L++ + I +V ++GEK +EV+ + A HCPGSVM LF+ G +LYTGDFR A E A + ++KD + +YLD T+C+P Y PSRE Sbjct: 14 LSIDRFDYDNLRARAYFLSHCHKDHMKGLRAPALRRRLQSSLKVKLYCSPVTKELLLTNSKYAFWENHIV-ALEVETPTQISLVDETTGEKEDIEVTLLPAGHCPGSVMFLFQGENGTVLYTGDFRL-AKGEAARMELLHSGTSVKD--IQSVYLDTTFCDPRFYHIPSRE 180
BLAST of FC917843 vs. ExPASy Swiss-Prot
Match: DCR1C_MOUSE (Protein artemis OS=Mus musculus GN=Dclre1c PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16 Identity = 64/174 (36.78%), Postives = 94/174 (54.02%), Query Frame = 3 Query: 135 ISVDRWTEGS---QVYFLTHLHLDHTQGLSSAWARGPL--------FCSRLTAKLFPLKFPGLDL--SLIRVLDIGSWHSIFVVSPSSGEKTFVEVSAIDAHHCPGSVMPLFREAFGCLLYTGDFRWEASNERAEIGRNTLVKA---LKDDVVDILYLDNTYCNPS-YAFPSRE 605 IS+DR+ + + YFL+H H DH +GL + + L +CS +T +L L P + I ++I + I +V +SGEK V V+ + A HCPGSVM LF+ + G +LYTGDFR + E R L+ + +KD + +YLD T+C+P Y PSRE Sbjct: 14 ISIDRFDRENLKARAYFLSHCHKDHMKGLRAPSLKRRLECSLKVFLYCSPVTKELL-LTSPKYRFWENRIITIEIETPTQISLVDEASGEKEEVVVTLLPAGHCPGSVMFLFQGSNGTVLYTGDFRL----AKGEASRMELLHSGGRVKD--IQSVYLDTTFCDPRFYQIPSRE 180 The following BLAST results are available for this feature:
BLAST of FC917843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC917843 ID=FC917843; Name=FC917843; organism=Citrus clementina; type=EST; length=606bpback to top |