FC917844

Overview
NameFC917844
Unique NameFC917844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917844 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.047e-13
Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  350 ILITTRDRQLLVAHEVDEEHILDLDVLNNDEALQFFSVKAFKSHRPVGDYVELSERVLKYADGLSLALKVLGSFLIGRSVDLWRSALERLKERSF 634
            I+ITTRD+ L+  +++    I ++  L + E++Q F   AF    P  ++ +LS  V+ YA GL LALKV GS L    +  W+SA+E +K  S+
Sbjct:  326 IIITTRDKHLIEKNDI----IYEVTALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSY 416          

HSP 2 Score: 33.4982 bits (75), Expect = 1.047e-13
Identity = 14/45 (31.11%), Postives = 26/45 (57.78%), Query Frame = 1
Query:  691 EIQSRKYFSMLHVFFKCRDRDYVAKILEGCGFSPVIGIEVLIEKS 825
            E + ++ F  +  F +  ++DY+ +ILE C      G+ +LI+KS
Sbjct:  431 EPKQQEMFLDIACFLRGEEKDYILQILESCHIGAEYGLRILIDKS 475          
BLAST of FC917844 vs. ExPASy Swiss-Prot
Match: Y4117_ARATH (Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.251e-11
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 2
Query:  350 ILITTRDRQLLVAHEVDEEHILDLDVLNNDEALQFFSVKAFKSHRPVGDYVELSERVLKYADGLSLALKVLGSFLIGRSVDLWRSALERLKER 628
            I++TT+++QLLV+H+++  H+  +   +  EAL  F   AFK   P  D   L+      A  L LAL+VLGSF+ G+  + W  +L  LK R
Sbjct:  320 IVVTTQNKQLLVSHDIN--HMYQVAYPSKQEALTIFCQHAFKQSSPSDDLKHLAIEFTTLAGHLPLALRVLGSFMRGKGKEEWEFSLPTLKSR 410          

HSP 2 Score: 26.9498 bits (58), Expect = 4.251e-11
Identity = 8/22 (36.36%), Postives = 15/22 (68.18%), Query Frame = 3
Query:  669 QISFEGLRDSEQKIFFDVACFF 734
            ++ ++GL D E+ +F  +AC F
Sbjct:  420 KVGYDGLHDHEKDLFLHIACIF 441          
The following BLAST results are available for this feature:
BLAST of FC917844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TMVRN_NICGU1.047e-1337.89TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
Y4117_ARATH4.251e-1137.63Putative disease resistance protein At4g11170 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ5YN05RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YN05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917844 ID=FC917844; Name=FC917844; organism=Citrus clementina; type=EST; length=844bp
CTTTCCGATTAACTGAATTGGCCTAAAAAAATTAACGATAACGTTTATTA
AAATACAATGTTTGAATAGAAATCTTACCCTCAAAAATTCAAATACTCCC
ATAACTCTCACGCACACCTCTCAATCAACACCGTAACCTTTGTTCTAGCT
TGAGGTCTTATTTTCACTACTCTAGCCAGCTCTTCTTCTGGTTTTGTTCG
GAACATCACACAGGAATCTGGCTCGGATAATAGAAGCAGCGGCAGCGGCA
ACTGGACCGCCGTTCATGGTGGAAGACCGGTCCGATCGGATCCTAACACT
TTTCACCACCCTAAAAGTCGCACCGATAATGGCGGCGGCGGCAGCCGGGA
TTCTAATAACAACGAGAGATAGACAGTTGTTGGTGGCACATGAAGTGGAT
GAAGAGCATATTCTTGACCTTGATGTACTAAATAACGATGAAGCTCTTCA
ATTCTTTAGTGTGAAAGCTTTTAAAAGCCATCGGCCTGTGGGGGACTATG
TGGAGCTGTCTGAACGTGTTCTGAAGTATGCTGATGGTCTTTCATTAGCT
CTAAAAGTTTTGGGATCTTTTCTAATTGGTAGATCTGTGGATCTATGGAG
AAGTGCCCTAGAAAGACTTAAAGAAAGATCCTTCAAATAGGATTATGAGT
ATACTTCAAATAAGTTTTCAAATAAGTTTTGAAGGACTACGAGATTCAGA
GCAGAAAATATTTTTCGATGTTGCATGTTTTTTTTAAATGCAGGGATAGA
GATTACGTGGCAAAAATTCTAGAGGGATGTGGTTTTTCGCCAGTCATTGG
GATAGAAGTTCTTATTGAAAAATCTCGATTAACTGTTGATGGTC
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