FC917845

Overview
NameFC917845
Unique NameFC917845
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_SCHPO (Eukaryotic translation initiation factor 2 subunit alpha OS=Schizosaccharomyces pombe GN=tif211 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.622e-68
Identity = 131/244 (53.69%), Postives = 166/244 (68.03%), Query Frame = 1
Query:  124 CRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVL 855
            CRMYE R+PEVD  V++ V+ I +MGAYV LLEY+NIEGM+L SE             +VGR E V+VLRVDKEKGYIDLSKRRVS ED+  CEER+NKSK VHSIMRH+AE   + LE +Y  IGWPLYRKYGHA++AFK+ +++PD V   L                  P  +  + D L+  I RR+TPQP+KIRAD+E+ CF ++G+  IK A++ AE     + P+K+KLVAPPLYVL
Sbjct:    6 CRMYENRFPEVDELVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELSRRRIRSVQKHIRVGRNEVVVVLRVDKEKGYIDLSKRRVSPEDVVKCEERFNKSKAVHSIMRHIAEKHNVPLETMYTTIGWPLYRKYGHAYDAFKLAISNPDHVFEGLE-----------------PPKSGVIND-LLAQISRRLTPQPIKIRADVEVTCFGYEGINAIKAALKAAEDVHTEEVPIKVKLVAPPLYVL 231          
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_YEAST (Eukaryotic translation initiation factor 2 subunit alpha OS=Saccharomyces cerevisiae GN=SUI2 PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.963e-62
Identity = 125/245 (51.02%), Postives = 159/245 (64.90%), Query Frame = 1
Query:  124 CRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLT 858
            CR YE +YPE+D  VM+ V+ IA+MGAYV LLEY+NIEGMIL SE             +VG+ +  +VLRVDKEKGYIDLSKRRVS EDI  CEE+Y KSK VHSI+R+ AE   I LEELY  I WPL RK+GHA+EAFK+ + D                   + V + +   +++V D L   I +R+TPQ +KIRAD+E+ CF ++G+  IKDA++ AE        VK+KLVA PLYVLT
Sbjct:    6 CRFYENKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSEDIIKCEEKYQKSKTVHSILRYCAEKFQIPLEELYKTIAWPLSRKFGHAYEAFKLSIID-------------------ETVWEGIEPPSKDVLDELKNYISKRLTPQAVKIRADVEVSCFSYEGIDAIKDALKSAEDMSTEQMQVKVKLVAAPLYVLT 231          
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_XENTR (Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus tropicalis GN=eif2s1 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.430e-56
Identity = 121/257 (47.08%), Postives = 163/257 (63.42%), Query Frame = 1
Query:  112 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPL---YRKYGH-AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLT 858
            P L CR Y+ ++PEVD  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDK+KGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE LY    W     Y+K G+ A++AFK  V+DPD VL+ L                    + E+ +  L+ NI RR+TPQ +KIRADIE+ C+ ++G+  +KDA+R   +    + P+KI L+APP YV+T
Sbjct:    2 PALSCRFYQHKFPEVDDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKDKGYIDLSKRRVSPEEALKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLYQRTAWVFDEKYKKPGYGAYDAFKHAVSDPD-VLDGLD-------------------LNEDERRVLIDNINRRLTPQAVKIRADIEVACYGYEGIDAVKDALRAGLSCSTENMPIKINLIAPPRYVMT 238          
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_XENLA (Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus laevis GN=eif2s1 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.069e-56
Identity = 118/257 (45.91%), Postives = 164/257 (63.81%), Query Frame = 1
Query:  112 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPL---YRKYGH-AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLT 858
            P L CR Y+ ++PEVD  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDK+KGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       L+ L+    W     Y+K G+ A++AFK  V+DPD +L+ L                    ++E+ +  L+ NI RR+TPQ +KIRADIE+ C+ ++G+  +KDA+R   +    + P+KI L+APP YV+T
Sbjct:    2 PGLNCRFYQHKFPEVDDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKDKGYIDLSKRRVSPEEALKCEDKFTKSKTVYSILRHVAEVLDYTKDEQLDSLFQRTAWVFDEKYKKPGYGAYDAFKNAVSDPD-ILDGLD-------------------LSEDERRVLIDNINRRLTPQAVKIRADIEVACYGYEGIDAVKDALRAGLSCSTENMPIKINLIAPPRYVMT 238          
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_PONAB (Eukaryotic translation initiation factor 2 subunit 1 OS=Pongo abelii GN=EIF2S1 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.575e-55
Identity = 118/257 (45.91%), Postives = 161/257 (62.65%), Query Frame = 1
Query:  112 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYRKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLT 858
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL                    + E+ ++ L+ NI RR+TPQ +KIRADIE+ C+ ++G+  +K+A+R        + P+KI L+APP YV+T
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNERVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSLD-------------------LNEDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTENMPIKINLIAPPRYVMT 238          
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_HUMAN (Eukaryotic translation initiation factor 2 subunit 1 OS=Homo sapiens GN=EIF2S1 PE=1 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 2.057e-55
Identity = 118/257 (45.91%), Postives = 161/257 (62.65%), Query Frame = 1
Query:  112 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYRKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLT 858
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL                    + E+ ++ L+ NI RR+TPQ +KIRADIE+ C+ ++G+  +K+A+R        + P+KI L+APP YV+T
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSLD-------------------LNEDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTENMPIKINLIAPPRYVMT 238          
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_RAT (Eukaryotic translation initiation factor 2 subunit 1 OS=Rattus norvegicus GN=Eif2s1 PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 3.508e-55
Identity = 118/257 (45.91%), Postives = 160/257 (62.26%), Query Frame = 1
Query:  112 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYRKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLT 858
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL                    + E+ ++ L+ NI RR+TPQ +KIRADIE+ C+ ++G+  +K+A+R          P+KI L+APP YV+T
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSLD-------------------LNEDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMT 238          
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_MOUSE (Eukaryotic translation initiation factor 2 subunit 1 OS=Mus musculus GN=Eif2s1 PE=1 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 3.508e-55
Identity = 118/257 (45.91%), Postives = 160/257 (62.26%), Query Frame = 1
Query:  112 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYRKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLT 858
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL                    + E+ ++ L+ NI RR+TPQ +KIRADIE+ C+ ++G+  +K+A+R          P+KI L+APP YV+T
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSLD-------------------LNEDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMT 238          
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_CHICK (Eukaryotic translation initiation factor 2 subunit 1 OS=Gallus gallus GN=EIF2S1 PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 3.508e-55
Identity = 119/257 (46.30%), Postives = 161/257 (62.65%), Query Frame = 1
Query:  112 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYRKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLT 858
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP ++L+SL                    +TEE +  L+ NI RR+TPQ +KIRADIE+ C+ ++G+  +K+A+R        + P+KI L+APP YV+T
Sbjct:    2 PALSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-AILDSLD-------------------LTEEERRVLIDNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTENMPIKINLIAPPRYVMT 238          
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_BOVIN (Eukaryotic translation initiation factor 2 subunit 1 OS=Bos taurus GN=EIF2S1 PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 3.508e-55
Identity = 118/257 (45.91%), Postives = 160/257 (62.26%), Query Frame = 1
Query:  112 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYRKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLT 858
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL                    + E+ ++ L+ NI RR+TPQ +KIRADIE+ C+ ++G+  +K+A+R          P+KI L+APP YV+T
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSLD-------------------LNEDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMT 238          
The following BLAST results are available for this feature:
BLAST of FC917845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
IF2A_SCHPO1.622e-6853.69Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_YEAST2.963e-6251.02Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_XENTR2.430e-5647.08Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_XENLA7.069e-5645.91Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_PONAB1.575e-5545.91Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_HUMAN2.057e-5545.91Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_RAT3.508e-5545.91Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_MOUSE3.508e-5545.91Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_CHICK3.508e-5546.30Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_BOVIN3.508e-5545.91Eukaryotic translation initiation factor 2 subunit... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA49BD05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917845 ID=FC917845; Name=FC917845; organism=Citrus clementina; type=EST; length=860bp
CTCTCTGGTTGTCTTAAAACCCTAATTCTTGTTCCCACTCCCTTCGTATT
TTCCCGAGAAAACGCAAAAGCTAAAAAGCTTTCCGAGCAACCAATCATGG
CAAGCCACTCGCCCAACCTGGAGTGCCGGATGTACGAGGCGAGGTACCCG
GAAGTCGACATGGCCGTGATGATCCAAGTGAAGAACATCGCCGACATGGG
CGCCTACGTGTCGCTGCTCGAGTACAACAACATCGAAGGGATGATCCTTT
TCTCGGAGCTCTCGCGACGTCGTATTCGTAGTGTCAGTAGCCTCATTAAA
GTCGGCCGCATCGAGCCCGTCATGGTCCTGCGTGTCGACAAGGAAAAAGG
TTACATTGATTTGAGTAAAAGAAGAGTTAGTGAAGAGGATATTCAAGCCT
GTGAGGAGAGGTACAACAAGAGCAAGCTCGTTCACTCTATCATGCGACAC
GTGGCTGAGACTTTGGGCATCGATTTAGAGGAACTGTATGTCAATATTGG
CTGGCCCTTGTACCGGAAATATGGTCATGCTTTTGAGGCATTCAAAATCA
TTGTTACTGATCCTGATTCTGTTTTGAATTCCCTCACTCGTGAAGTCAAA
GAAATTGGCCCTGATGGACAGGAGGTAACTAAGGTGGTTCCTGCTGTGAC
GGAGGAAGTGAAAGATGCTTTGGTAAAAAATATTAGGAGAAGAATGACCC
CACAGCCATTGAAGATTCGAGCTGACATTGAAATGAAATGCTTCCAGTTT
GATGGAGTTCTTCATATTAAGGATGCCATGCGGAAAGCTGAGGCTGCTGG
CAACAATGACTGCCCTGTGAAAATCAAATTGGTTGCTCCCCCCTTGTATG
TGCTTACTAC
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