FC917860

Overview
NameFC917860
Unique NameFC917860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917860 vs. ExPASy Swiss-Prot
Match: PGES2_DANRE (Prostaglandin E synthase 2 OS=Danio rerio GN=ptges2 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 5.348e-60
Identity = 129/271 (47.60%), Postives = 171/271 (63.10%), Query Frame = 3
Query:  252 LPTDLVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGE-QLVDSSAIIDQL-------DQKLT------PKRKADSPSGDD----------------------------EEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNI-TDERAALYEAAETWVDAL-NGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTR 932
            L TDL   ++ LYQY+ CPFC+KV+AFLDY+ +PY++VEVNP+ ++EIKWS Y+KVPILMV+G  QL DSS II  L       D+K++      P+ K+ +  G D                            EE KWR W D+ LVHL+SPN+YR  +EAL SFDYI   G F   E   AKY GAAAM+ +SK+LK K+N+  D R  LY+A   WV A+   ++F+GG +PNLADLAVFGVLR +  L+S  DM+EHT++ +WY+R
Sbjct:  101 LDTDL---KLTLYQYKTCPFCSKVRAFLDYHRLPYEIVEVNPVMRQEIKWSTYRKVPILMVNGTVQLNDSSVIISALKTYISSKDKKISEILACYPEMKSKNDRGKDVIEFGNKYWVMVHDADADQLYPGKDSRKEEIKWRTWADDWLVHLISPNVYRTPTEALASFDYIVREGKFGSFEGFFAKYFGAAAMWIISKRLKYKHNLQADVRQDLYKAVNDWVAAIGKNKQFMGGDEPNLADLAVFGVLRVMEGLQSFDDMMEHTKVKKWYSR 368          
BLAST of FC917860 vs. ExPASy Swiss-Prot
Match: PGES2_MOUSE (Prostaglandin E synthase 2 OS=Mus musculus GN=Ptges2 PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.363e-55
Identity = 123/277 (44.40%), Postives = 160/277 (57.76%), Query Frame = 3
Query:  240 AKEPLPTDLVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDG----EQLVDSSAIIDQLDQKLT------------PKRKADSPSGDD----------------------------EEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDE-RAALYEAAETWVDAL-NGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTR 932
            A+ PL   L   ++ LYQY+ CPFC+KV+AFLD++ +PY+VVEVNP+ + EIK+S Y+KVPIL+       +QL DSS II  L   L             P  KA +  G +                            EE KWR W D+ LVHL+SPN+YR  +EAL SFDYI   G F   E   AKY GAAAMY +SK+LK ++++ D+ R  LYEAA  WV A+   R F+GG KPNLADLAV+GVLR +  L +  D++ H+ I  WY R
Sbjct:   91 AQLPLSNSL---QLTLYQYKTCPFCSKVRAFLDFHSLPYQVVEVNPVRRTEIKFSSYRKVPILVAQEGDSLQQLNDSSVIISALKTYLVSGQPLEEVITYYPPMKAMNDQGKEVTEFCNKYWPMLDEKEAQQMYGGKEARTEEMKWRQWADDWLVHLISPNVYRTPAEALASFDYIVREGKFGAVEAAMAKYVGAAAMYLISKRLKSRHHLQDDVRVDLYEAANKWVTAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLEAFDDLMRHSHIQPWYLR 364          
BLAST of FC917860 vs. ExPASy Swiss-Prot
Match: PGES2_HUMAN (Prostaglandin E synthase 2 OS=Homo sapiens GN=PTGES2 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.325e-55
Identity = 120/265 (45.28%), Postives = 155/265 (58.49%), Query Frame = 3
Query:  276 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVD----GEQLVDSSAIIDQLDQKLT------------PKRKADSPSGDD----------------------------EEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDE-RAALYEAAETWVDAL-NGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTR 932
            ++ LYQY+ CPFC+KV+AFLD++ +PY+VVEVNP+ + EIK+S Y+KVPIL+       +QL DSS II  L   L             P  KA +  G +                            EE KWR W D+ LVHL+SPN+YR  +EAL SFDYI   G F   E   AKY GAAAMY +SK+LK ++ + D  R  LYEAA+ WV A+   R F+GG KPNLADLAV+GVLR +  L +  D+++HT I  WY R
Sbjct:  101 QLTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVRRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQPLEEIITYYPAMKAVNEQGKEVTEFGNKYWLMLNEKEAQQVYGGKEARTEEMKWRQWADDWLVHLISPNVYRTPTEALASFDYIVREGKFGAVEGAVAKYMGAAAMYLISKRLKSRHRLQDNVREDLYEAADKWVAAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLDAFDDLMQHTHIQPWYLR 365          
BLAST of FC917860 vs. ExPASy Swiss-Prot
Match: PGES2_MACFA (Prostaglandin E synthase 2 OS=Macaca fascicularis GN=PTGES2 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 5.180e-55
Identity = 120/265 (45.28%), Postives = 155/265 (58.49%), Query Frame = 3
Query:  276 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVD----GEQLVDSSAIIDQLDQKLT------------PKRKADSPSGDD----------------------------EEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDE-RAALYEAAETWVDAL-NGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTR 932
            ++ LYQY+ CPFC+KV+AFLD++ +PY+VVEVNP+ + EIK+S Y+KVPIL+       +QL DSS II  L   L             P  KA +  G +                            EE KWR W D+ LVHL+SPN+YR  +EAL SFDYI   G F   E   AKY GAAAMY +SK+LK ++ + D  R  LYEAA+ WV A+   R F+GG KPNLADLAV+GVLR +  L +  D+++HT I  WY R
Sbjct:  101 QLTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVLRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQPLEEIITYYPAMKAVNDQGKEVTEFGNKYWLMLNEKEAQQVYSGKEARTEEMKWRQWADDWLVHLISPNVYRTPTEALASFDYIVREGKFGAVEGAVAKYMGAAAMYLISKRLKSRHRLQDNVREDLYEAADKWVAAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLDAFDDLMQHTHIQPWYLR 365          
The following BLAST results are available for this feature:
BLAST of FC917860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PGES2_DANRE5.348e-6047.60Prostaglandin E synthase 2 OS=Danio rerio GN=ptges... [more]
PGES2_MOUSE1.363e-5544.40Prostaglandin E synthase 2 OS=Mus musculus GN=Ptge... [more]
PGES2_HUMAN2.325e-5545.28Prostaglandin E synthase 2 OS=Homo sapiens GN=PTGE... [more]
PGES2_MACFA5.180e-5545.28Prostaglandin E synthase 2 OS=Macaca fascicularis ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA49BD08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917860 ID=FC917860; Name=FC917860; organism=Citrus clementina; type=EST; length=933bp
CTCGAATATCGGTCGCGATGAGAAGATCAACTACTGTAACTTCCTTGATA
CTTTCCAGTAGAACCCTAGCCACCGCCACCATTAACCACCGTCTCCTCAC
CACCAATTCCACTTCATACAGCCGATGGCGTTGCTTCTCCACAGGCTCAG
CTGCAGCCGCCGCCACCGCCTCTCTTGGCGTCGCCGGTGCTCTAGCCTCT
GCTGCTGCAATCGCTTCCCTCTCAGCCCAAAGCGTCTACGCCAAGGAGCC
TTTGCCAACGGACCTTGTTCCTAAGGAAGTTGTTCTCTATCAGTACGAAG
CTTGCCCATTTTGCAATAAAGTTAAAGCATTCCTGGACTACTATGATATA
CCTTACAAAGTTGTGGAAGTGAATCCAATTAATAAGAAAGAGATCAAGTG
GTCTGAATATAAAAAGGTGCCTATTTTGATGGTGGATGGCGAGCAACTGG
TCGACTCATCTGCTATAATTGATCAGTTGGACCAAAAATTAACTCCAAAG
AGGAAGGCCGATTCACCCTCTGGCGATGATGAAGAGAAAAAGTGGCGTGG
ATGGGTGGATAATCACCTTGTGCATCTGTTGTCCCCAAACATATATCGCA
ATACTTCTGAGGCTCTTGAGTCCTTTGACTATATCACAAGCAGTGGCAAT
TTCAGCTTCACAGAAAAACTTACAGCAAAATATGCTGGAGCTGCAGCAAT
GTATTTTGTGTCCAAAAAACTGAAAAAGAAATACAATATTACTGATGAGC
GCGCTGCATTATATGAAGCTGCAGAAACATGGGTGGATGCTCTTAATGGT
AGGGAATTTCTAGGGGGTTCGAAGCCTAATTTAGCTGACCTTGCTGTGTT
TGGAGTATTAAGACCAATCCGGTACCTAAGATCAGGTAGAGACATGGTGG
AGCACACTCGAATAGGAGAGTGGTATACAAGAA
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