FC917862

Overview
NameFC917862
Unique NameFC917862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length924
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917862 vs. ExPASy Swiss-Prot
Match: TRAC9_MAIZE (Putative AC9 transposase OS=Zea mays PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.835e-22
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  638 KKEILDMYVCERVKYISVLEQAQGRIAITTDMWTAENQTKAYMAITAHFIDDGWALRIILLSFLEVSGSHTGQVLCDKLMGSLLELNIERKLSSI 922
            +K I+D+Y+ E+ K    L+  Q R + T DMWT+  Q K+YM +T H+IDD W L+  ++ F  V G HTGQ L       +++ NIE+KL ++
Sbjct:  216 RKYIMDLYLEEKEKLYGKLKDVQSRFSTTMDMWTS-CQNKSYMCVTIHWIDDDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVKWNIEKKLFAL 309          

HSP 2 Score: 48.521 bits (114), Expect = 1.835e-22
Identity = 45/148 (30.41%), Postives = 72/148 (48.65%), Query Frame = 3
Query:  252 RRRGRMRSIVWEHFEKKKIN-GID--KVV-----CNY--CKNSLVARSTDGTKHLHDQLKTCQ--VKKEIEAT*FPPAKKVASEKGK--TTVETH-FDLDVTRRKMARAIVMHEYPLSIVEH*GLRDVMSSLNQLWKPVSRNLSRRRF 650
            +R  +  S VW+HF KK+I   +D  K V     CN+  CK    A    GT    + L+T    VK ++         K   + GK    +E + +D  V+ +K+  AI+MHEYP +IVEH    + + SL   + P+   ++ R++
Sbjct:   79 KRAKKCTSDVWQHFTKKEIEVEVDGKKYVQVWGHCNFPNCKAKYRAEGHHGTSGFRNHLRTSHSLVKGQL-------CLKSEKDHGKDINLIEPYKYDEVVSLKKLHLAIIMHEYPFNIVEHEYFVEFVKSLRPHF-PIKSRVTARKY 218          
BLAST of FC917862 vs. ExPASy Swiss-Prot
Match: TRA1_MAIZE (Putative AC transposase OS=Zea mays PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.836e-22
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  638 KKEILDMYVCERVKYISVLEQAQGRIAITTDMWTAENQTKAYMAITAHFIDDGWALRIILLSFLEVSGSHTGQVLCDKLMGSLLELNIERKLSSI 922
            +K I+D+Y+ E+ K    L+  Q R + T DMWT+  Q K+YM +T H+IDD W L+  ++ F  V G HTGQ L       +++ NIE+KL ++
Sbjct:  271 RKYIMDLYLEEKEKLYGKLKDVQSRFSTTMDMWTS-CQNKSYMCVTIHWIDDDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVKWNIEKKLFAL 364          

HSP 2 Score: 48.521 bits (114), Expect = 1.836e-22
Identity = 45/148 (30.41%), Postives = 72/148 (48.65%), Query Frame = 3
Query:  252 RRRGRMRSIVWEHFEKKKIN-GID--KVV-----CNY--CKNSLVARSTDGTKHLHDQLKTCQ--VKKEIEAT*FPPAKKVASEKGK--TTVETH-FDLDVTRRKMARAIVMHEYPLSIVEH*GLRDVMSSLNQLWKPVSRNLSRRRF 650
            +R  +  S VW+HF KK+I   +D  K V     CN+  CK    A    GT    + L+T    VK ++         K   + GK    +E + +D  V+ +K+  AI+MHEYP +IVEH    + + SL   + P+   ++ R++
Sbjct:  134 KRAKKCTSDVWQHFTKKEIEVEVDGKKYVQVWGHCNFPNCKAKYRAEGHHGTSGFRNHLRTSHSLVKGQL-------CLKSEKDHGKDINLIEPYKYDEVVSLKKLHLAIIMHEYPFNIVEHEYFVEFVKSLRPHF-PIKSRVTARKY 273          
The following BLAST results are available for this feature:
BLAST of FC917862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRAC9_MAIZE1.835e-2240.00Putative AC9 transposase OS=Zea mays PE=4 SV=1[more]
TRA1_MAIZE1.836e-2240.00Putative AC transposase OS=Zea mays PE=2 SV=2[more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100AC06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917862 ID=FC917862; Name=FC917862; organism=Citrus clementina; type=EST; length=924bp
TCCCCCTTCTCTTTCTTGACTTCTTTATCGTGAAAGAGAGAGAACGACAC
ACACCTGCTGCAGCCGCTGCCGCTGCCATTAACTAATGCTGACGCCGACA
CCGACTCCCGCACCCACGGTCTAGTTTCTTTAGTAGCTGAACAGGTTTGA
CATTCAATATGTCAAGTTCTTTGCCCACACCACACTTAATGGATGATGAG
GGCAATCAAACTCAAGGTGAATCAGCTGCTAGTGTTACTCACGGTGGGTT
ACGACGTAGAGGACGGATGAGGTCAATTGTGTGGGAGCATTTTGAGAAGA
AAAAAATTAATGGGATTGATAAGGTTGTGTGCAATTATTGTAAAAATTCA
TTAGTAGCAAGGAGTACTGATGGAACAAAGCACTTGCACGATCAATTGAA
GACATGTCAAGTGAAAAAGGAAATAGAGGCCACATAATTCCCACCGGCAA
AGAAAGTTGCTAGTGAAAAAGGGAAGACTACAGTAGAAACTCATTTTGAT
CTTGATGTTACGAGGAGAAAAATGGCACGTGCTATTGTCATGCATGAGTA
CCCTTTGAGTATTGTAGAGCATTAGGGGTTGAGGGATGTTATGTCTTCTC
TAAATCAATTGTGGAAGCCGGTGTCTCGAAATCTATCAAGAAGGAGATTT
TAGACATGTATGTGTGTGAAAGGGTCAAATATATCAGTGTATTGGAGCAA
GCTCAAGGTAGAATTGCTATTACAACTGATATGTGGACTGCAGAAAATCA
AACAAAAGCATATATGGCAATCACTGCACACTTTATTGACGACGGTTGGG
CATTACGGATTATACTTTTGAGCTTTTTAGAAGTGTCTGGTTCTCACACA
GGCCAAGTGCTTTGTGATAAGTTGATGGGTTCGTTATTGGAGCTCAACAT
TGAGCGTAAGTTATCCTCCATAAT
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