FC917862
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC917862 vs. ExPASy Swiss-Prot
Match: TRAC9_MAIZE (Putative AC9 transposase OS=Zea mays PE=4 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.835e-22 Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 2 Query: 638 KKEILDMYVCERVKYISVLEQAQGRIAITTDMWTAENQTKAYMAITAHFIDDGWALRIILLSFLEVSGSHTGQVLCDKLMGSLLELNIERKLSSI 922 +K I+D+Y+ E+ K L+ Q R + T DMWT+ Q K+YM +T H+IDD W L+ ++ F V G HTGQ L +++ NIE+KL ++ Sbjct: 216 RKYIMDLYLEEKEKLYGKLKDVQSRFSTTMDMWTS-CQNKSYMCVTIHWIDDDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVKWNIEKKLFAL 309 HSP 2 Score: 48.521 bits (114), Expect = 1.835e-22 Identity = 45/148 (30.41%), Postives = 72/148 (48.65%), Query Frame = 3 Query: 252 RRRGRMRSIVWEHFEKKKIN-GID--KVV-----CNY--CKNSLVARSTDGTKHLHDQLKTCQ--VKKEIEAT*FPPAKKVASEKGK--TTVETH-FDLDVTRRKMARAIVMHEYPLSIVEH*GLRDVMSSLNQLWKPVSRNLSRRRF 650 +R + S VW+HF KK+I +D K V CN+ CK A GT + L+T VK ++ K + GK +E + +D V+ +K+ AI+MHEYP +IVEH + + SL + P+ ++ R++ Sbjct: 79 KRAKKCTSDVWQHFTKKEIEVEVDGKKYVQVWGHCNFPNCKAKYRAEGHHGTSGFRNHLRTSHSLVKGQL-------CLKSEKDHGKDINLIEPYKYDEVVSLKKLHLAIIMHEYPFNIVEHEYFVEFVKSLRPHF-PIKSRVTARKY 218
BLAST of FC917862 vs. ExPASy Swiss-Prot
Match: TRA1_MAIZE (Putative AC transposase OS=Zea mays PE=2 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 1.836e-22 Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 2 Query: 638 KKEILDMYVCERVKYISVLEQAQGRIAITTDMWTAENQTKAYMAITAHFIDDGWALRIILLSFLEVSGSHTGQVLCDKLMGSLLELNIERKLSSI 922 +K I+D+Y+ E+ K L+ Q R + T DMWT+ Q K+YM +T H+IDD W L+ ++ F V G HTGQ L +++ NIE+KL ++ Sbjct: 271 RKYIMDLYLEEKEKLYGKLKDVQSRFSTTMDMWTS-CQNKSYMCVTIHWIDDDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVKWNIEKKLFAL 364 HSP 2 Score: 48.521 bits (114), Expect = 1.836e-22 Identity = 45/148 (30.41%), Postives = 72/148 (48.65%), Query Frame = 3 Query: 252 RRRGRMRSIVWEHFEKKKIN-GID--KVV-----CNY--CKNSLVARSTDGTKHLHDQLKTCQ--VKKEIEAT*FPPAKKVASEKGK--TTVETH-FDLDVTRRKMARAIVMHEYPLSIVEH*GLRDVMSSLNQLWKPVSRNLSRRRF 650 +R + S VW+HF KK+I +D K V CN+ CK A GT + L+T VK ++ K + GK +E + +D V+ +K+ AI+MHEYP +IVEH + + SL + P+ ++ R++ Sbjct: 134 KRAKKCTSDVWQHFTKKEIEVEVDGKKYVQVWGHCNFPNCKAKYRAEGHHGTSGFRNHLRTSHSLVKGQL-------CLKSEKDHGKDINLIEPYKYDEVVSLKKLHLAIIMHEYPFNIVEHEYFVEFVKSLRPHF-PIKSRVTARKY 273 The following BLAST results are available for this feature:
BLAST of FC917862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 2
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC917862 ID=FC917862; Name=FC917862; organism=Citrus clementina; type=EST; length=924bpback to top |