FC917864

Overview
NameFC917864
Unique NameFC917864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC917864 vs. ExPASy Swiss-Prot
Match: Y5541_ARATH (ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana GN=At5g65410 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.056e-14
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 3 
Query:  402 YKECLKNHAASIGGHALDGCGEFMXXXXXXXXXXXXLKCAACGCHRNFHRREPDQDHHLP 581
            ++ECLKN A +IGGHA+DGCGEFM            LKCAACGCHRNFHR+E    HH P
Sbjct:   75 FRECLKNQAVNIGGHAVDGCGEFM--PAGIEGTIDALKCAACGCHRNFHRKELPYFHHAP 132
[Close]
BLAST of FC917864 vs. ExPASy Swiss-Prot
Match: Y4466_ARATH (ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-14
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 3 
Query:  396 VTYKECLKNHAASIGGHALDGCGEFMXXXXXXXXXXXXLKCAACGCHRNFHRREPDQDHHLPH-VPT 593
            + Y+ECLKNHA +IGGHA+DGC EFM            LKCAACGCHRNFHR+E +      H VPT
Sbjct:   47 IRYRECLKNHAVNIGGHAVDGCCEFM--PSGEDGTLDALKCAACGCHRNFHRKETESIGGRAHRVPT 111
The following BLAST results are available for this feature:
BLAST of FC917864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y5541_ARATH1.056e-1460.00ZF-HD homeobox protein At5g65410 OS=Arabidopsis th... [more]
Y4466_ARATH5.242e-1456.72ZF-HD homeobox protein At4g24660 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA94CD08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917864 ID=FC917864; Name=FC917864; organism=Citrus clementina; type=EST; length=741bp
CTTTCTTTCTTCTTCTTCTACCTTCGTTTTTTCCTCTCCCATTTCATGGA
CCAAAAATTCAATCTTTTTATCAAAAACCTAACCCTAACAACTTCTTGAA
AGCACTTTTCGTCTCAAAATCACTTTTGTTTTTTTTTTTAATCTCCTCCT
CCTTCAAGCTTTTAATTAAATGTTTCAACTCAACCATGGACATAACCCCC
ACCAACAACAACACACTAAACACAAACACTAACTCCAAGTCCCCTGAAAC
AGACACCACTGATCATCATCAAACGGGAGCCACTCGGATCCACTCAGCGA
AGCCGTTAACCTTCACAAACGGCGTCTTGAAACGCCACCAGCCTCAGCCG
CAGCACCACCAACGTCACCACCACCACCACCACCACCCAATTGTTGTAAC
GTACAAAGAATGTCTCAAGAACCATGCAGCGAGCATAGGTGGCCATGCAC
TCGACGGCTGTGGAGAGTTCATGCCGTCCCCGACCGCCACCCCCTCAGAC
CCCACTTCTCTAAAATGCGCCGCCTGCGGCTGCCATCGTAACTTCCACCG
CCGTGAGCCTGATCAAGATCATCATCTCCCTCACGTTCCAACAACGGCAA
CAACAGCAACAATTGAGTATCAGCCTCACCACCGCCACCACCCACCACCA
CCGGTGACGCAGCCACCGTCTCGAAGGAGCCCCAGCTCTGCATCTCCGCC
ACCGATCTCTTCCTCAAACTACCCTTCAGCACCCCATATGT
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