FC917992
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.870e-36 Identity = 91/201 (45.27%), Postives = 129/201 (64.18%), Query Frame = 2 Query: 308 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK----KTVSGQQQYPKASYQNSQVAQ 886 +LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K K V Q Y SY +Q Q Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVKPVEYSQMY---SYSYNQYYQ 198
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.870e-36 Identity = 91/221 (41.18%), Postives = 120/221 (54.30%), Query Frame = 2 Query: 308 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT---PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS----GQQQYPKASYQNSQVAQS--DDDPNNTTVFVGNLDS 937 TLW+GDL+ WMD T++ +A E V VKV+R+K + + Y F++F S A AER L +N T +P F+LNWA+ G + + P+ +IFVGDL D L TFR+ YPS AK+++D +TG ++ YGFVRF E EQ A+ M G C RP+RI A+ K S S N Q Q DP NTTVFVG L S Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLAS 306
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 2.442e-36 Identity = 90/201 (44.78%), Postives = 129/201 (64.18%), Query Frame = 2 Query: 308 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK----KTVSGQQQYPKASYQNSQVAQ 886 +LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G + ++P+R+ A K K V Q Y SY +Q Q Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKASRVKPVEYSQMY---SYSYNQYYQ 198
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 3.190e-36 Identity = 91/201 (45.27%), Postives = 128/201 (63.68%), Query Frame = 2 Query: 308 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK----KTVSGQQQYPKASYQNSQVAQ 886 +LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V +P+R+ A K K V Q Y SY +Q Q Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASRVKPVEYSQMY---SYSYNQYYQ 198
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 5.441e-36 Identity = 90/201 (44.78%), Postives = 128/201 (63.68%), Query Frame = 2 Query: 308 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK----KTVSGQQQYPKASYQNSQVAQ 886 +LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L NG P+P + F+LN+ ++G ++ D++P++++FVGDL DV D ML E F YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K K V Q Y SY +Q Q Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVKPVEYSQMY---SYSYNQYYQ 198
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2) HSP 1 Score: 151.369 bits (381), Expect = 7.106e-36 Identity = 91/201 (45.27%), Postives = 127/201 (63.18%), Query Frame = 2 Query: 308 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK----KTVSGQQQYPKASYQNSQVAQ 886 +LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YPS +G KVV+D TG +KGYGFV+F DE EQ RA+TE G V +P+R+ A K K V Q Y SY +Q Q Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASRVKPVEYSQMY---SYSYNQYYQ 198
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 6.016e-35 Identity = 83/218 (38.07%), Postives = 120/218 (55.05%), Query Frame = 2 Query: 308 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK--------TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNL 931 TLW+G+L+ W+ E ++ + G+ V VK+IRN+ TG GY F+EF S A + + N P+P F+LNWAS G ++ +++IFVGDL+ +V ++ + F +RY S K AK++ D T ++GYGFVRF DE++Q A+ EM G C RP+R+G AT K V P Y +Q D N+TVFVG L Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGL 310
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 4.035e-31 Identity = 76/205 (37.07%), Postives = 117/205 (57.07%), Query Frame = 2 Query: 308 TLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP--NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE-MNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNT 910 +LW+GDL +MDE ++ F+ GE VK+I ++ TG GY F+E A +R +Q NG +P N + F+LN+A++G ++ + P+ ++FVGDL ++V DY L + F ++PS KGAKVV D G ++GYGFV+F DE+EQ +A+ E N +P+RI A NK + +Y + Q P N+ Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG--KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKGNKASTYHNQNNTYNTNYQQQYYRQPYNS 208
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 6.240e-24 Identity = 68/189 (35.98%), Postives = 107/189 (56.61%), Query Frame = 2 Query: 302 IRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG--EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPAT---NKKTVSGQQQ 847 + +LW+G+L+ +MDE ++ FA GE VV +++IR+K TG+ GYGF+E ER L+ NG P+P + F+L+ +++G K+ ++ ++FV DL DV D ML E F + S K+V+D G +K GFV F E EQ RA+ ++ G + +R+ A+ NKK S + Q Sbjct: 1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG---KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLD-ANGHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSRVNKKKESSENQ 185
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 2.622e-22 Identity = 82/268 (30.60%), Postives = 126/268 (47.01%), Query Frame = 2 Query: 311 LWIGDLQYWMDETYLNTCFAHTGEV-VAVKVIRNKQTGQ----------IEGYGFIEFISRAGAERVLQTFNGTPMPN-GEQNFRLNWASFGAGEKRDDTPDH------TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT-VSGQQQYPKAS----------------------------YQNSQVAQ------------SDDDPNNTTVFVGNLDS 937 L++GDL D+ + +A GE + V+++ N +GY F++F S A L NG +PN + +LNWA+ + + +IFVGDLA +VT+ L E F RY ST AK+V D++TG +KGYGFV+F + EQ A++EM GVF + R +++GP + ++ VSG Y ++S ++ + ++Q DPNNTTVF+G L S Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSS 322 The following BLAST results are available for this feature:
BLAST of FC917992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC917992 ID=FC917992; Name=FC917992; organism=Citrus clementina; type=EST; length=939bpback to top |