FC917992

Overview
NameFC917992
Unique NameFC917992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length939
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.870e-36
Identity = 91/201 (45.27%), Postives = 129/201 (64.18%), Query Frame = 2
Query:  308 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK----KTVSGQQQYPKASYQNSQVAQ 886
            +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G V   ++P+R+  A  K    K V   Q Y   SY  +Q  Q
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVKPVEYSQMY---SYSYNQYYQ 198          
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.870e-36
Identity = 91/221 (41.18%), Postives = 120/221 (54.30%), Query Frame = 2
Query:  308 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT---PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS----GQQQYPKASYQNSQVAQS--DDDPNNTTVFVGNLDS 937
            TLW+GDL+ WMD T++   +A   E V VKV+R+K +    +  Y F++F S A AER L  +N T +P     F+LNWA+ G  +  +     P+ +IFVGDL     D  L  TFR+ YPS   AK+++D +TG ++ YGFVRF  E EQ  A+  M G  C  RP+RI  A+ K   S            S  N Q  Q     DP NTTVFVG L S
Sbjct:   86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLAS 306          
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.442e-36
Identity = 90/201 (44.78%), Postives = 129/201 (64.18%), Query Frame = 2
Query:  308 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK----KTVSGQQQYPKASYQNSQVAQ 886
            +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G +   ++P+R+  A  K    K V   Q Y   SY  +Q  Q
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKASRVKPVEYSQMY---SYSYNQYYQ 198          
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.190e-36
Identity = 91/201 (45.27%), Postives = 128/201 (63.68%), Query Frame = 2
Query:  308 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK----KTVSGQQQYPKASYQNSQVAQ 886
            +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G V    +P+R+  A  K    K V   Q Y   SY  +Q  Q
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASRVKPVEYSQMY---SYSYNQYYQ 198          
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.441e-36
Identity = 90/201 (44.78%), Postives = 128/201 (63.68%), Query Frame = 2
Query:  308 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK----KTVSGQQQYPKASYQNSQVAQ 886
            +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+ ++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G V   ++P+R+  A  K    K V   Q Y   SY  +Q  Q
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVKPVEYSQMY---SYSYNQYYQ 198          
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 7.106e-36
Identity = 91/201 (45.27%), Postives = 127/201 (63.18%), Query Frame = 2
Query:  308 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK----KTVSGQQQYPKASYQNSQVAQ 886
            +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D  TG +KGYGFV+F DE EQ RA+TE  G V    +P+R+  A  K    K V   Q Y   SY  +Q  Q
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASRVKPVEYSQMY---SYSYNQYYQ 198          
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 6.016e-35
Identity = 83/218 (38.07%), Postives = 120/218 (55.05%), Query Frame = 2
Query:  308 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK--------TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNL 931
            TLW+G+L+ W+ E ++   +   G+ V VK+IRN+ TG   GY F+EF S   A   + + N  P+P     F+LNWAS G   ++      +++IFVGDL+ +V ++ +   F +RY S K AK++ D  T  ++GYGFVRF DE++Q  A+ EM G  C  RP+R+G AT K          V      P   Y  +Q      D  N+TVFVG L
Sbjct:   94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGL 310          
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 4.035e-31
Identity = 76/205 (37.07%), Postives = 117/205 (57.07%), Query Frame = 2
Query:  308 TLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP--NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE-MNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNT 910
            +LW+GDL  +MDE ++   F+  GE    VK+I ++ TG   GY F+E    A  +R +Q  NG  +P  N  + F+LN+A++G  ++ +  P+ ++FVGDL ++V DY L + F  ++PS KGAKVV D   G ++GYGFV+F DE+EQ +A+ E  N      +P+RI  A NK   +        +Y  +   Q    P N+
Sbjct:    7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG--KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKGNKASTYHNQNNTYNTNYQQQYYRQPYNS 208          
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.240e-24
Identity = 68/189 (35.98%), Postives = 107/189 (56.61%), Query Frame = 2
Query:  302 IRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG--EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPAT---NKKTVSGQQQ 847
            + +LW+G+L+ +MDE ++   FA  GE VV +++IR+K TG+  GYGF+E       ER L+  NG P+P     + F+L+ +++G   K+ ++   ++FV DL  DV D ML E F   + S    K+V+D   G +K  GFV F  E EQ RA+ ++ G      + +R+  A+   NKK  S + Q
Sbjct:    1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG---KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLD-ANGHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSRVNKKKESSENQ 185          
BLAST of FC917992 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.622e-22
Identity = 82/268 (30.60%), Postives = 126/268 (47.01%), Query Frame = 2
Query:  311 LWIGDLQYWMDETYLNTCFAHTGEV-VAVKVIRNKQTGQ----------IEGYGFIEFISRAGAERVLQTFNGTPMPN-GEQNFRLNWASFGAGEKRDDTPDH------TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT-VSGQQQYPKAS----------------------------YQNSQVAQ------------SDDDPNNTTVFVGNLDS 937
            L++GDL    D+  +   +A  GE  + V+++ N                +GY F++F S   A   L   NG  +PN   +  +LNWA+       +   +       +IFVGDLA +VT+  L E F  RY ST  AK+V D++TG +KGYGFV+F +  EQ  A++EM GVF + R +++GP + ++  VSG   Y ++S                            ++ + ++Q               DPNNTTVF+G L S
Sbjct:   56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSS 322          
The following BLAST results are available for this feature:
BLAST of FC917992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
TSAP1_HUMAN1.870e-3645.27tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
CSX1_SCHPO1.870e-3641.18RNA-binding post-transcriptional regulator csx1 OS... [more]
TSAP1_BOVIN2.442e-3644.78tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
TSAP1_RAT3.190e-3645.27tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_PONAB5.441e-3644.78tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
TSAP1_MOUSE7.106e-3645.27tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
YG41_SCHPO6.016e-3538.07Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
TSP1L_DANRE4.035e-3137.07tRNA selenocysteine 1-associated protein 1-like OS... [more]
TSAP1_DANRE6.240e-2435.98tRNA selenocysteine 1-associated protein 1 OS=Dani... [more]
NAM8_YEAST2.622e-2230.60Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA8CA03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA8CA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917992 ID=FC917992; Name=FC917992; organism=Citrus clementina; type=EST; length=939bp
TTAGGGTTTCTTTCTCGCTTCAGAGTTCGGATTATTCTCTCGTTCAATCT
CAATAACGATCATGATGCAGCCAGCGCCCGGAGCGGTCCCACCCCCGCCA
CCACCGATGGCCGCTCACCAGTACCAATACCAACAACAGGCGCCGCCTCA
GCAGCAGCCGCCACCGCAACCCTCGCCGTACATGATGATGATGCCGCCTC
AGCCCCAGGCCCAGCCTCCTGCCATGTGGGCCACGCAGGCTGCTGCTCCT
CAGGCGGCGGGAGTTGCGGTACCACCTCAGCAGCAGGGTCAGCCCGGTGA
GATCCGGACCCTGTGGATCGGGGACTTGCAGTATTGGATGGATGAGACCT
ATCTCAACACTTGTTTTGCACACACCGGCGAGGTTGTCGCTGTAAAAGTA
ATTCGTAATAAGCAAACTGGTCAAATAGAAGGTTATGGATTTATTGAGTT
TATTTCGCGTGCTGGTGCTGAAAGAGTTTTGCAGACATTTAACGGTACCC
CTATGCCAAACGGTGAGCAGAACTTCAGGCTAAACTGGGCATCTTTTGGT
GCTGGCGAGAAGCGCGATGACACCCCTGACCACACAATATTTGTTGGAGA
TTTGGCTGCTGACGTTACTGATTACATGCTTCAAGAGACCTTCAGGGCCC
GCTATCCCTCTACTAAAGGTGCAAAGGTTGTCATTGATAGGCTTACTGGA
CGCACAAAGGGTTATGGATTTGTGAGATTTGGTGATGAAAGTGAACAGCT
ACGTGCCATGACTGAGATGAATGGTGTCTTTTGTTCTACGAGACCAATGC
GGATTGGTCCAGCTACTAATAAGAAAACTGTTTCAGGTCAGCAGCAGTAC
CCTAAAGCTTCATATCAGAATTCTCAAGTGGCACAGAGTGATGACGATCC
AAATAATACAACGGTGTTTGTTGGTAATCTGGACTCTAT
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