FC917995

Overview
NameFC917995
Unique NameFC917995
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917995 vs. ExPASy Swiss-Prot
Match: SGS3_SOLLC (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.296e-18
Identity = 68/200 (34.00%), Postives = 88/200 (44.00%), Query Frame = 2
Query:  137 MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKSFGSQ--------NSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDG--------------HDKESGNLD 670
            MS  + G  P     SN+S K K     S   V+ ++  V DI L+S Q++G WEVY RK KNK GS   K +  Q        N N KAWGH D  +K G R N  SGR     W+T +   K+      ARP L +         +   + P L++GW+W SR  S    H +D               HD E   LD
Sbjct:    1 MSFSKWGGKP-----SNSSEKQK---ASSTPTVEEINRGVGDIGLNSEQNEG-WEVYARKPKNKGGSSAGKQWAPQNPSPKAWGNQNTKAWGHPDVGKKSGTRNNAGSGRGSGNNWSTPSDPQKL------ARPHLYD-----GGFPSSAPVPPALKNGWDWSSRVASA---HPKDNSQVAAAADDDKASEHDAEDNELD 177          
BLAST of FC917995 vs. ExPASy Swiss-Prot
Match: SGS3_ARATH (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 54/144 (37.50%), Postives = 76/144 (52.78%), Query Frame = 2
Query:  197 KGKNVTEVSNSQVDHLSGSVADISLDSAQDDGG-WEVYVRKSKNKAGSGTTKSFGSQNSN-YKAWGHLDSTQKPGM--RGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGS 616
            K KNV      +V+ L   +A   L S+QDDGG WEV  +K+KNK G+ + K++ SQNSN  +AWG     +   +  RGN  SGR         N + +     ++ R +  +   + N +A     RPPLE GWNWQ+R GS
Sbjct:   10 KEKNVQGGYRPEVEQLVQGLAGTRLASSQDDGGEWEVISKKNKNKPGNTSGKTWVSQNSNPPRAWGGQQQGRGSNVSGRGNNVSGRG--------NGNGRGIQANISGRGRALSRKYDNNFVAPPPVSRPPLEGGWNWQARGGS 145          
The following BLAST results are available for this feature:
BLAST of FC917995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SGS3_SOLLC2.296e-1834.00Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum ... [more]
SGS3_ARATH9.029e-1537.50Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ12YD08RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917995 ID=FC917995; Name=FC917995; organism=Citrus clementina; type=EST; length=790bp
TCTGCGTCTCACTCACTTAGAGCGTGCTCTCACCTCCAGTCTTCAGTCTT
CCGCCGATACACACTGTTTCCTTTTGCTCTCTCCACTCAGGTGAAGAGAT
CTTAGCTCGGTAATCGAAGAGGATTTTTGCACTAAGATGAGTGCAAGAAG
AGGTGGAAAGTCTCCAATTGCTGCTGGCAGCAGCAACACTTCTGTGAAGG
GGAAAAATGTGACTGAAGTCTCCAATTCCCAGGTTGATCATTTGAGCGGA
TCTGTAGCAGATATCAGCCTGGATTCGGCACAGGATGATGGTGGATGGGA
GGTTTATGTGAGGAAGTCAAAAAACAAAGCTGGCAGTGGGACTACCAAAT
CCTTTGGTTCTCAGAATTCTAATTATAAGGCATGGGGACATCTGGATAGC
ACTCAGAAACCAGGAATGCGGGGTAATGGTAGCTCAGGGAGGGCTCCTGC
CAAAACCTGGACAACTGTAAATGCAGATTCTAAGATACCAGCTGGCAGAG
TGAATGCAAGACCCCAATTGACCAACTGGGTTCCTGAGACAAACAACATG
GCCACACAAACAGGGATTCGCCCTCCTCTGGAGCATGGTTGGAATTGGCA
ATCTAGAGCTGGTTCTACTATATTCAAACATTCAGAAGATGGCCATGATA
AAGAGAGTGGTAATCTTGACGAGGTCCACAAAGACAATGTTGAAGATGAT
TATGACGATGAGAAAGATGATGATTCTAATGTTTCAGATGATTCGGATGA
TGAGTTACTGAGTGATGAGTTTGATTCTGATACCAGTCAG
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