FC917996
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.778e-23 Identity = 60/139 (43.17%), Postives = 80/139 (57.55%), Query Frame = 2 Query: 473 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSE--GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGNDRRTEACSD--LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTK 877 T+W+GDL WMD TF+ ++ + VNVKV+R+K + Y FV+F S AAAE+ L Y+ +++P F+LNWAT G D SIFVGDL P DS L TF S YPS AK+I+D TG ++ Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSR 224
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 5.174e-23 Identity = 60/139 (43.17%), Postives = 87/139 (62.59%), Query Frame = 2 Query: 473 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGNDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 880 ++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L +G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F YPS +G KV++D TG +KG Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKG 138
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 5.174e-23 Identity = 60/139 (43.17%), Postives = 87/139 (62.59%), Query Frame = 2 Query: 473 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGNDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 880 ++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L +G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F YPS +G KV++D TG +KG Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKG 138
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 5.174e-23 Identity = 60/139 (43.17%), Postives = 87/139 (62.59%), Query Frame = 2 Query: 473 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGNDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 880 ++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L +G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F YPS +G KV++D TG +KG Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKG 138
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 6.758e-23 Identity = 60/139 (43.17%), Postives = 87/139 (62.59%), Query Frame = 2 Query: 473 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGNDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 880 ++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L +G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F YPS +G KV++D TG +KG Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKG 138
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.505e-22 Identity = 59/139 (42.45%), Postives = 86/139 (61.87%), Query Frame = 2 Query: 473 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGNDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 880 ++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L +G +P + F+LN+ T+ ++ + + S+FVGDL PDV D +L E F YPS +G KV++D TG +KG Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKG 138
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 2.568e-22 Identity = 58/154 (37.66%), Postives = 89/154 (57.79%), Query Frame = 2 Query: 434 NGSNNNFTNDET----KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSG-NDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 880 N SN + DE T+W+G+L W+ E F+ ++ G+ V VK+IRN+ TG + GY FVEF S A + S + +P T+ F+LNWA+ G ++ S+ SIFVGDL+P+V + + F+S+Y S K AK++ D T ++G Sbjct: 77 NTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRG 229
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.843e-21 Identity = 54/131 (41.22%), Postives = 81/131 (61.83%), Query Frame = 2 Query: 473 TIWIGDLFHWMDETFLHNCFSHTGQVV-NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP--FRLNWATFSGNDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIID 856 ++W+GDL +MDE F+ FS G+ VK+I ++ TG S GY FVE A+ ++ +Q +G L+P ++ P F+LN+AT+ +R E + S+FVGDL +V D L + F K+PS KGAKV+ D Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTD 134
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.541e-17 Identity = 47/131 (35.88%), Postives = 74/131 (56.49%), Query Frame = 2 Query: 473 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGNDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 862 ++W+G+L +MDE F+ F+ G+ VV +++IR+K TG++ GYGFVE A E+ L+ +G +P P R + N + S S+FV DL PDV D +L E F + S K+++D+N Sbjct: 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLS--RSNYGKQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDAN 131
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 1.412e-12 Identity = 52/165 (31.52%), Postives = 87/165 (52.73%), Query Frame = 2 Query: 437 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQV-VNVKVIRNKQTGQ----------SEGYGFVEFYSRAAAEKVLQSYSGSLMPN-TDQPFRLNWATFSGND-----RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 880 G++N +++GDL D+ + ++ G+ +NV+++ N ++GY FV+F S A L +G L+PN ++ +LNWAT S ++ ++ ++ SIFVGDLAP+VT+S L E F ++Y S AK++ D TG +KG Sbjct: 43 GASNVSLGTTGNQLYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKG 206 The following BLAST results are available for this feature:
BLAST of FC917996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >FC917996 ID=FC917996; Name=FC917996; organism=Citrus clementina; type=EST; length=925bpback to top |