FC917999

Overview
NameFC917999
Unique NameFC917999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length918
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917999 vs. ExPASy Swiss-Prot
Match: XCT_ORYSJ (Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa subsp. japonica GN=XCT PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 2.499e-94
Identity = 189/287 (65.85%), Postives = 199/287 (69.34%), Query Frame = 3
Query:   57 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILETAFKKETVGLVTREEYVEKRVNIRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNSRLSFADDFXXXXXXXXXXXXXLKTKRLAQAKLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVLTIA 917
            MSG GDGYVGTAQDAV+IRRLEKQREAERRKI+ELK KS    GQPGLLQFGSSTSEILETAFKKETVGLVTRE+YVEKRVNIR                                G+ RLSF D+               + K     KLGKDPTVETSFLPD                        I+NEPL ITYSYWDG GHRRVIQVRKGD+IGEFLRAVQQQLAPEFRE+RTTSVENLLYVKEDLIIPHQHSFYELI+NKARGKSGPLFHFDVHEDV TIA
Sbjct:    1 MSGFGDGYVGTAQDAVKIRRLEKQREAERRKIEELKNKS--SDGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIRTKIEEEEKEKLQKLQQEEEELQMQKRKKRRVRGDPRLSFCDEIENGSDEDEFENQEPQKKH-GPVKLGKDPTVETSFLPDREREAEEQAERERLKKQWSREQELIKNEPLTITYSYWDGTGHRRVIQVRKGDSIGEFLRAVQQQLAPEFREVRTTSVENLLYVKEDLIIPHQHSFYELIINKARGKSGPLFHFDVHEDVRTIA 284          
BLAST of FC917999 vs. ExPASy Swiss-Prot
Match: XCT_ORYSI (Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa subsp. indica GN=XCT PE=3 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 2.499e-94
Identity = 189/287 (65.85%), Postives = 199/287 (69.34%), Query Frame = 3
Query:   57 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILETAFKKETVGLVTREEYVEKRVNIRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNSRLSFADDFXXXXXXXXXXXXXLKTKRLAQAKLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVLTIA 917
            MSG GDGYVGTAQDAV+IRRLEKQREAERRKI+ELK KS    GQPGLLQFGSSTSEILETAFKKETVGLVTRE+YVEKRVNIR                                G+ RLSF D+               + K     KLGKDPTVETSFLPD                        I+NEPL ITYSYWDG GHRRVIQVRKGD+IGEFLRAVQQQLAPEFRE+RTTSVENLLYVKEDLIIPHQHSFYELI+NKARGKSGPLFHFDVHEDV TIA
Sbjct:    1 MSGFGDGYVGTAQDAVKIRRLEKQREAERRKIEELKNKS--SDGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIRTKIEEEEKEKLQKLQQEEEELQMQKRKKRRVRGDPRLSFCDEIENGSDEDEFENQEPQKKH-GPVKLGKDPTVETSFLPDREREAEEQAERERLKKQWSREQELIKNEPLTITYSYWDGTGHRRVIQVRKGDSIGEFLRAVQQQLAPEFREVRTTSVENLLYVKEDLIIPHQHSFYELIINKARGKSGPLFHFDVHEDVRTIA 284          
BLAST of FC917999 vs. ExPASy Swiss-Prot
Match: XCT_ARATH (Protein XAP5 CIRCADIAN TIMEKEEPER OS=Arabidopsis thaliana GN=XCT PE=1 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 5.567e-94
Identity = 187/288 (64.93%), Postives = 201/288 (69.79%), Query Frame = 3
Query:   57 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILETAFKKETVGLVTREEYVEKRVNIRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GNSRLSFADDFXXXXXXXXXXXXXLKTKRLAQAKLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVLTIA 917
            MSGMGDGYVGTAQDAVRIRRL+KQREAER+KIQELK+KS S   Q GLLQFG+S+ EIL+TAFKKETVGLVTREEYVEKRVNIRN                                G+SRLSFA+DF               T  L   KLGKDP+VET+FLPD                        I+NEPL+ITYSYWDG GHRRVIQVRKGD IG FLRAVQQQLAP+FREIRT SVENLLYVKEDLIIPHQHSFYELI+NKARGKSGPLFHFDVHEDV TIA
Sbjct:    1 MSGMGDGYVGTAQDAVRIRRLQKQREAERKKIQELKSKSASGNDQSGLLQFGTSSCEILDTAFKKETVGLVTREEYVEKRVNIRNKFEEEEKEKLQKLQQEEEELQLEKRNKKRKIKGSSRLSFAEDFENGSDEDDGENKSSGTGNLRCGKLGKDPSVETNFLPDSEREAEEQAERERLKKQWLREQEQIKNEPLEITYSYWDGTGHRRVIQVRKGDPIGNFLRAVQQQLAPDFREIRTASVENLLYVKEDLIIPHQHSFYELIINKARGKSGPLFHFDVHEDVRTIA 288          
BLAST of FC917999 vs. ExPASy Swiss-Prot
Match: F50AA_XENLA (Protein FAM50A-A OS=Xenopus laevis GN=fam50a-A PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.296e-36
Identity = 70/140 (50.00%), Postives = 96/140 (68.57%), Query Frame = 3
Query:  486 KRLAQAKLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDV 905
            K+  + KLGK+P V+TSFLPD                        I++E ++IT+SYWDG+GHRR ++++KG++I +FL+   + L  +F E+R+  VE L+Y+KEDLIIPH HSFY+ IV KARGKSGPLF+FDVHEDV
Sbjct:  150 KKKKKKKLGKNPDVDTSFLPDRDREEEENRLREELRQEWEHKQEKIKSEEIEITFSYWDGSGHRRTVKMKKGNSIQQFLQKALESLRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHEDV 289          
BLAST of FC917999 vs. ExPASy Swiss-Prot
Match: F50AB_XENLA (Protein FAM50A-B OS=Xenopus laevis GN=fam50a-B PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.180e-35
Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = 3
Query:  480 KTKRLAQAKLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDV 905
            K K+  + +LGK+P V+TSFLPD                        I++E ++IT+SYWDG+GHRR ++++KG++I +FL+   + L  +F E+R+  VE L+Y+KEDLIIPH HSFY+ IV KARGKSGPLF+FDVHEDV
Sbjct:  151 KKKKKKKQQLGKNPDVDTSFLPDRDREEEENRLREELRQEWERKQEKIKSEEIEITFSYWDGSGHRRTVKMKKGNSIQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHEDV 292          
BLAST of FC917999 vs. ExPASy Swiss-Prot
Match: FA50B_MOUSE (Protein FAM50B OS=Mus musculus GN=Fam50b PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.541e-35
Identity = 94/280 (33.57%), Postives = 133/280 (47.50%), Query Frame = 3
Query:   78 YVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTS-EILETAFKKETVGLVTREEYVEKRVNIRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGN--SRLSFADDFXXXXXXXXXXXXXLKTKRL-AQAKLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDV 905
            Y GT ++A R   L K+RE ++ +++ LK +   +      +    S   + +E   K  TVGLVT  +   K+  +                                     S LSF  D               +     A+  LGK+P V+TSFLPD                        ++ E ++IT+SYWDG+GHRR +++ KG T+ +FL+   Q L  +FRE+R   VE L+YVKEDLI+PH H+FY+ IV KARGKSGPLF FDVH+DV
Sbjct:    4 YKGTMREAGRAMHLIKKREKQKEQMEVLKQRIAEETIMKSKVDKKFSAHYDAVEAELKSSTVGLVTLNDMKAKQEALLREREMQLAKREQLEQRRIQLEMLREKERRRERKRKISNLSFTLDEEEGDQEDSRQAESAEAHSAGAKKNLGKNPDVDTSFLPDREREEEENRLREELRQEWEAKREKVKGEEVEITFSYWDGSGHRRTVRMSKGSTVQQFLKRALQGLRRDFRELRAAGVEQLMYVKEDLILPHYHTFYDFIVAKARGKSGPLFSFDVHDDV 283          
BLAST of FC917999 vs. ExPASy Swiss-Prot
Match: FA50A_HUMAN (Protein FAM50A OS=Homo sapiens GN=FAM50A PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.628e-35
Identity = 69/134 (51.49%), Postives = 93/134 (69.40%), Query Frame = 3
Query:  504 KLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDV 905
            KLGK+P V+TSFLPD                        I++E ++IT+SYWDG+GHRR +++RKG+T+ +FL+   + L  +F E+R+  VE L+Y+KEDLIIPH HSFY+ IV KARGKSGPLF+FDVH+DV
Sbjct:  155 KLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRTVKMRKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDV 288          
BLAST of FC917999 vs. ExPASy Swiss-Prot
Match: FA50A_XENTR (Protein FAM50A OS=Xenopus tropicalis GN=fam50a PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 3.433e-35
Identity = 69/134 (51.49%), Postives = 93/134 (69.40%), Query Frame = 3
Query:  504 KLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDV 905
            KLGK+P V+TSFLPD                        I++E ++IT+SYWDG+GHRR ++++KG++I +FL+   + L  +F E+R+  VE L+Y+KEDLIIPH HSFY+ IV KARGKSGPLF+FDVHEDV
Sbjct:  166 KLGKNPDVDTSFLPDRDREEEENRLREELRQEWERKQEKIKSEEIEITFSYWDGSGHRRTVKMKKGNSIQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHEDV 299          
BLAST of FC917999 vs. ExPASy Swiss-Prot
Match: FA50A_DANRE (Protein FAM50A OS=Danio rerio GN=fam50a PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.483e-35
Identity = 67/134 (50.00%), Postives = 94/134 (70.15%), Query Frame = 3
Query:  504 KLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDV 905
            KLGK+P V+TSFLPD                        I++E ++IT+SYWDG+GHR+ ++++KG+TI +FL+   + L  +F E+R+  VE+L+Y+KEDLIIPH HSFY+ IV KARGKSGPLF+FDVH+D+
Sbjct:  157 KLGKNPDVDTSFLPDRDREEEENRLREELRQEWERKQEKIKSEEIEITFSYWDGSGHRKTVKMKKGNTIQQFLQRALEVLRKDFSELRSAGVEHLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDI 290          
BLAST of FC917999 vs. ExPASy Swiss-Prot
Match: FA50A_MOUSE (Protein FAM50A OS=Mus musculus GN=Fam50a PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.856e-35
Identity = 68/134 (50.75%), Postives = 93/134 (69.40%), Query Frame = 3
Query:  504 KLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDV 905
            KLGK+P V+TSFLPD                        I++E ++IT+SYWDG+GHRR ++++KG+T+ +FL+   + L  +F E+R+  VE L+Y+KEDLIIPH HSFY+ IV KARGKSGPLF+FDVH+DV
Sbjct:  155 KLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRTVKMKKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDV 288          
The following BLAST results are available for this feature:
BLAST of FC917999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
XCT_ORYSJ2.499e-9465.85Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa ... [more]
XCT_ORYSI2.499e-9465.85Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa ... [more]
XCT_ARATH5.567e-9464.93Protein XAP5 CIRCADIAN TIMEKEEPER OS=Arabidopsis t... [more]
F50AA_XENLA5.296e-3650.00Protein FAM50A-A OS=Xenopus laevis GN=fam50a-A PE=... [more]
F50AB_XENLA1.180e-3549.30Protein FAM50A-B OS=Xenopus laevis GN=fam50a-B PE=... [more]
FA50B_MOUSE1.541e-3533.57Protein FAM50B OS=Mus musculus GN=Fam50b PE=2 SV=1[more]
FA50A_HUMAN2.628e-3551.49Protein FAM50A OS=Homo sapiens GN=FAM50A PE=1 SV=2[more]
FA50A_XENTR3.433e-3551.49Protein FAM50A OS=Xenopus tropicalis GN=fam50a PE=... [more]
FA50A_DANRE4.483e-3550.00Protein FAM50A OS=Danio rerio GN=fam50a PE=2 SV=1[more]
FA50A_MOUSE5.856e-3550.75Protein FAM50A OS=Mus musculus GN=Fam50a PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA80CA02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CA02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917999 ID=FC917999; Name=FC917999; organism=Citrus clementina; type=EST; length=918bp
ATCGAGAAATCGAGAAAGGCAGAACTGCTACCGAGAGAAACACACAGCAA
ATCAAGATGTCGGGTATGGGAGATGGGTACGTGGGCACGGCCCAAGACGC
GGTGAGGATCCGGAGACTCGAGAAGCAAAGAGAAGCCGAGCGTCGCAAAA
TCCAAGAGCTCAAAACGAAGTCCGTCTCCGACAAGGGCCAGCCCGGTCTC
CTCCAGTTTGGTTCAAGTACCTCCGAGATTCTAGAAACTGCGTTTAAGAA
GGAAACCGTAGGTTTAGTCACCAGAGAGGAATACGTTGAGAAGAGGGTTA
ATATTCGGAACAAGATTGAAGAGGAAGAAAAGGAGAAGCTTCAGAAGCTA
CTACAAGAGGAAGAGGAGCTGCAATTGGAAAAGCGTAAAAAGCGAAAGAT
TAAGGGAAATTCTCGATTATCATTTGCTGATGATTTTGAGAGTGAAAATG
AAGAGGAGAATGGAGAAATTGAAAATTTGAAAACAAAGAGGCTTGCGCAA
GCGAAATTGGGAAAAGATCCAACGGTGGAGACTAGCTTTTTGCCTGACAG
TGAGAGAGAGGCAGAGGAGCAATCTGAGCGTGAACGGTTGCAGCGACAGT
GGCTTCGTGAGCAGGAGCAAATTCGAAATGAGCCCCTTCAAATCACTTAT
AGTTATTGGGATGGAGCAGGCCATAGACGAGTTATCCAGGTTCGGAAGGG
TGATACAATAGGAGAGTTTCTTCGGGCTGTTCAACAACAACTTGCACCTG
AGTTTCGAGAAATCCGAACGACGTCAGTGGAAAATTTGCTTTATGTTAAA
GAAGATCTTATCATCCCTCATCAACACAGTTTTTATGAGCTTATTGTTAA
CAAAGCCAGGGGAAAAAGTGGACCGCTTTTTCACTTTGATGTTCACGAGG
ATGTACTGACGATTGCTG
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