FC918003

Overview
NameFC918003
Unique NameFC918003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length877
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918003 vs. ExPASy Swiss-Prot
Match: YU88_ARATH (UPF0187 protein At3g61320, chloroplastic OS=Arabidopsis thaliana GN=At3g61320 PE=2 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 7.801e-66
Identity = 146/273 (53.48%), Postives = 176/273 (64.47%), Query Frame = 2
Query:   62 SHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQ-SQSETKTLTLISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHXXXXXXXXXXXXXXXXXXXXXXXPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDE-CIKDSLLRYIMAFPVALKGHVICDSDVSGXXXXXXXXXXXXXXXXSKHRPRCIIEFISQSLQLLNLEATKQNM 874
            S+F  ++LL+ +  I +  F  KS N    +  S  ES  S  ET T  LI +LRA+PDWAD +KERG++QKR+LY+HEKWVEH                       PPV  FT VAVVIASYNSA+    LPG  P+LR+SSLPYQLTAPALALLLVFRTEASYSR+ +G+KAW  IIAGTND A  VI   D+S DE  IKD LLRYI AFPVALK HVI  SD++                 +KHRPRC+IEFISQS+QLL L+  K+++
Sbjct:   11 SNFTHRSLLESRFPIFSTGF-RKSVNLKPPRVSSGPESNDSGHETLTDKLIHLLRAVPDWADEIKERGMQQKRSLYTHEKWVEHRSSLRHVRHLLSSFSSRVILSLIPPVFFFTSVAVVIASYNSAVALDWLPGIFPILRSSSLPYQLTAPALALLLVFRTEASYSRYEEGRKAWVGIIAGTNDLARQVICSVDSSGDELIIKDLLLRYIAAFPVALKCHVIYGSDIARDLRNLIEADDLSLILQAKHRPRCVIEFISQSIQLLKLDDAKRDL 282          
BLAST of FC918003 vs. ExPASy Swiss-Prot
Match: YU87_ARATH (UPF0187 protein At2g45870, chloroplastic OS=Arabidopsis thaliana GN=At2g45870 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.738e-65
Identity = 136/254 (53.54%), Postives = 170/254 (66.93%), Query Frame = 2
Query:  125 SKSPNPLTFK-TLSCLESQSQSETKTLT--LISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHXXXXXXXXXXXXXXXXXXXXXXXPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDE-CIKDSLLRYIMAFPVALKGHVICDSDVSGXXXXXXXXXXXXXXXXSKHRPRCIIEFISQSLQLLNLEATKQNM 874
            +++P  L FK   SC+ S  +S+   L+  LIS+L+A+P+W+D +KER ++QKR+LY+HE WV H                       PPV  FT VA++IA YNSA+D   LP F PVLRAS LPYQLTAPALALLLVFRTEASYSRF  G+KAW +II+GTND A +VIS    S DE  I+D+LLRYI+AFPVALK HVI  SD++                 SKHRPRC+I+FISQSLQLLNL++TK +M
Sbjct:   29 ARAPKSLHFKFNPSCVSSGPKSDDSPLSEKLISLLKAVPNWSDGIKERRMQQKRSLYTHENWVRHRSSLRHLRHVSSSPSSRVILSLIPPVFFFTTVAILIAGYNSAVDLDWLPDFFPVLRASPLPYQLTAPALALLLVFRTEASYSRFEQGRKAWVKIISGTNDLARLVISSVHGSGDELIIRDALLRYIVAFPVALKCHVIYGSDIASDLKNVIEVDDLSLILQSKHRPRCVIQFISQSLQLLNLDSTKIDM 282          
The following BLAST results are available for this feature:
BLAST of FC918003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YU88_ARATH7.801e-6653.48UPF0187 protein At3g61320, chloroplastic OS=Arabid... [more]
YU87_ARATH1.738e-6553.54UPF0187 protein At2g45870, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA69AE01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918003 ID=FC918003; Name=FC918003; organism=Citrus clementina; type=EST; length=877bp
CAAACCCTAATCTTTATCACAAATGAAACAAGCCACATTCCGCTCAAAAA
TCTTACCTCCTTCCCATTTTATCCCCAAAACCCTCCTCAAATTACAACCT
TCAATCACCACCCTTACCTTTCCCTCCAAATCCCCAAACCCCCTTACTTT
CAAAACCCTCTCTTGCTTAGAGTCGCAGTCTCAATCAGAAACCAAAACCC
TAACCCTGATTTCAGTCCTGCGGGCGATCCCAGACTGGGCGGACCGCGTG
AAAGAGCGTGGGGTGAAACAAAAACGTACCTTATACAGCCATGAGAAGTG
GGTCGAACACAGAAGCTCATTGCGTCACGTGCGGCACTTGCTTTCAAGCT
TATCTTCCCGCGTGATACTTTCACTGATCCCGCCTGTGATTGCGTTTACT
ATGGTGGCTGTGGTGATTGCGAGTTACAATTCTGCTTTGGACTCCCATTT
GTTGCCTGGGTTTTTGCCCGTTCTGAGAGCTTCTTCACTGCCGTATCAAT
TGACGGCTCCTGCGTTGGCTCTGCTTTTGGTGTTTAGAACTGAGGCTTCG
TATTCAAGGTTCGTAGACGGAAAAAAGGCCTGGACTCAAATCATTGCTGG
AACTAATGATTTTGCTACGATGGTCATTTCGGGAACTGACAACTCCACTG
ACGAGTGCATCAAAGATTCTCTTCTGCGCTACATTATGGCTTTTCCGGTT
GCTCTCAAGGGTCATGTGATTTGTGACTCAGATGTTAGCGGAGATCTCCA
AGATCTGCTTGATGCAGATGATCTAGCAATAGTACTCGATTCAAAGCATC
GACCACGCTGCATTATCGAGTTCATTTCTCAGAGCCTTCAATTACTAAAC
TTAGAGGCGACAAAGCAAAATATGAGT
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