FC918041

Overview
NameFC918041
Unique NameFC918041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length891
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC918041 vs. ExPASy Swiss-Prot
Match: CCA11_ARATH (Cyclin-A1-1 OS=Arabidopsis thaliana GN=CYCA1-1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.367e-17
Identity = 75/210 (35.71%), Postives = 98/210 (46.67%), Query Frame = 1 
Query:  220 QNRRXXXXXXXXXXLAKRHA-SSSDNFAKYTAVPPHLAKKRAPLSNVTNQKNXXXXXXXXXXXXXXXXXXXTKLXXXXXXXXXXXXXTSISGNFLPASSNGKTSTTVPVPCKVTSLPRSDENVKTXXXXXXXXXXXXXXMDVSPSKSDANSVSMDESMSVCDSFKSPEVEYLDNNDVPPLDSIDRKTFRNLYISDHTERTENVCSRDILA 846
            QNRR          LAKR A SSS+N  K   + P + KKRAPLSN+T   N                    KL               ++ +F   SSN + S    VP KV S                           SPSKSD  SVSMDE+ S  DS+KSP+VEY++N+DV  + SI+RK   NL+I+ ++E  +N CSRD+L+
Sbjct:    6 QNRRSSFSSSTKSSLAKRQAPSSSENSVK---LMPAMTKKRAPLSNIT---NQKIASRLQNSDSVHCSNKSAKLKIAPS--------VCVNASF---SSNLQQSI---VPHKVAS---------------------------SPSKSDDGSVSMDETRSSSDSYKSPQVEYIENDDVSAVVSIERKALSNLFITPNSETIDNYCSRDVLS 168
The following BLAST results are available for this feature:
BLAST of FC918041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CCA11_ARATH2.367e-1735.71Cyclin-A1-1 OS=Arabidopsis thaliana GN=CYCA1-1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA13DD11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA13DD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918041 ID=FC918041; Name=FC918041; organism=Citrus clementina; type=EST; length=891bp
AATCTTTCAAAATCTTTCAAAAACTCTCAGCAAAAGACTCTCTGTCTCCC
GTCTCTGTCTCCCGTCTCGTTCTCTTTCTCTTTTTATCAAGTAAAATAAT
ACACATGTTCTTCCACTAATTCACTTTCTTGTTCTTGTTAGAAGAACAAA
AGACAGAGGCATTAATTCTTTCCACTAAAAACAGTGAACTGGGTTTGATC
GAGAAAGAGAATGTCGACGCAGAACCGGCGTTCATCGTTTTCCTCGTCGA
CGACGTCGTCGTTGGCAAAGCGGCACGCGTCGTCTTCGGATAATTTCGCC
AAGTACACGGCGGTTCCACCGCATTTGGCCAAGAAGCGAGCTCCACTCAG
TAACGTCACCAATCAAAAGAATGTGACTCAAAGTGGCTCAAAAAGCTTGC
TTTCATCGTCTGTTTTGGTTCCTTGCTCGACTAAACTTGCCAAGGCCAAG
AAGGCACCTGCAGCCAACAATGCTAACACAAGCATTTCTGGGAACTTCTT
ACCAGCATCCTCAAATGGGAAAACCAGCACAACTGTTCCTGTTCCTTGTA
AGGTTACATCTTTGCCTAGAAGTGATGAAAATGTCAAAACAAGCGCCCCC
AGCATTGCTGCTGCTGTTTCTGTTTCTTGCAGCATGGATGTTTCTCCTAG
TAAATCGGATGCAAATTCAGTTTCTATGGATGAGTCAATGTCTGTTTGTG
ATTCTTTCAAGAGCCCTGAAGTTGAATATTTGGATAACAATGATGTTCCA
CCACTTGATTCCATTGATAGGAAAACTTTCAGAAACCTCTACATTTCAGA
CCATACAGAAAGAACAGAGAATGTTTGCAGCAGAGATATATTGGCAGATA
TGGATACAGATGATAGAGTTGTTAATGTTGATGACAACTAC
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