FC918042

Overview
NameFC918042
Unique NameFC918042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length808
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918042 vs. ExPASy Swiss-Prot
Match: CML48_ARATH (Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.941e-44
Identity = 88/154 (57.14%), Postives = 121/154 (78.57%), Query Frame = 1
Query:  322 QFSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALS-SGYQRFSLSTIRLLMFLFRNPHDSL-RIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGRRKLGLSFDSFVECGMVVK 777
            QFS+Y    F P THP+++RSFE  DR+RSGF++E+EL+QALS SGY   S  TIRLL+F+++ P DSL R+GPKE+ +LW+CL QWRAIF RYDRDRSGK++  +LRDA Y++G  +P SV QL++ ++D+ +G + + L FDSF+ECGM+VK
Sbjct:   41 QFSSYS-GMFSPETHPEIVRSFESADRNRSGFLEESELRQALSLSGYDGISNRTIRLLLFIYKIPVDSLLRLGPKEYVELWNCLAQWRAIFNRYDRDRSGKMNSTQLRDAFYNLGCVLPTSVHQLIVSQFDDGTG-KTVDLCFDSFLECGMIVK 192          
BLAST of FC918042 vs. ExPASy Swiss-Prot
Match: CML49_ARATH (Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.469e-39
Identity = 80/151 (52.98%), Postives = 109/151 (72.19%), Query Frame = 1
Query:  325 FSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGRRKLGLSFDSFVECGMVVK 777
            F++   SAFPPGT P+++  F+  DRD SGFID+ ELQ ALSS  Q FS+ T+ LLM+LF N +   +IGPKEF  L+  L  WR+IFER+D+DRSG+ID  ELRDAL S+G++V P +L LL+ K+D +SG R   + +D+F+EC + VK
Sbjct:  153 FASLVPSAFPPGTDPNIVACFQAADRDNSGFIDDKELQGALSSYNQSFSIRTVHLLMYLFTNSNVR-KIGPKEFTSLFFSLQNWRSIFERFDKDRSGRIDTNELRDALMSLGFSVSPVILDLLVSKFD-KSGGRNRAIEYDNFIECCLTVK 301          
BLAST of FC918042 vs. ExPASy Swiss-Prot
Match: CML50_ARATH (Probable calcium-binding protein CML50 OS=Arabidopsis thaliana GN=CML50 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.347e-37
Identity = 78/151 (51.66%), Postives = 110/151 (72.85%), Query Frame = 1
Query:  325 FSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGRRKLGLSFDSFVECGMVVK 777
            F++   S F PGT P+++  F+  D+D SGFID+ ELQ ALSS  QRFS+ T+ LLM+LF N + +++IGPKEF  L+  L  WR+IFER D+DRSG+ID+ ELRDAL S+G++V P VL LL+ K+D +SG +   + +D+F+EC + VK
Sbjct:  172 FASLIPSGFAPGTDPNIVACFQAADQDGSGFIDDKELQGALSSYQQRFSMRTVHLLMYLFTNSN-AMKIGPKEFTALFYSLQNWRSIFERSDKDRSGRIDVNELRDALLSLGFSVSPVVLDLLVSKFD-KSGGKNRAIEYDNFIECCLTVK 320          
BLAST of FC918042 vs. ExPASy Swiss-Prot
Match: PEF1_XENLA (Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.143e-21
Identity = 58/151 (38.41%), Postives = 87/151 (57.62%), Query Frame = 1
Query:  322 QFSAYGHSA----FPPGTHPDVIRSFEMVDRDRSGFIDENELQQAL-SSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGRRKLGLSFDSFVE 759
            Q  +YG  A     PPG  P+    F+ VD D SG+I   EL+QAL ++ +  F+  T  ++M +F +  +S RI    F+ LW  + QWR +F++YDRDRSG I+  EL  AL  +GY + P  +Q++M +Y  RS +   GL  D F++
Sbjct:   97 QHGSYGQGAPAGNIPPGVDPEAFSWFQTVDTDHSGYISLKELKQALVNTNWSSFNDETCTMMMNMF-DKSNSGRIDMFGFSALWRFIQQWRNLFQQYDRDRSGSINQGELHQALCQMGYQLSPQFVQIVMSRYAQRSAQP--GLQLDRFIQ 244          
BLAST of FC918042 vs. ExPASy Swiss-Prot
Match: PEF1_MOUSE (Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.814e-19
Identity = 53/129 (41.09%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  334 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQAL-SSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRS 717
            YG    PP   P+    F+ VD D SG+I   EL+QAL +S +  F+  T  +++ +F +   S RI    F+ LW  L QWR +F++YDRDRSG I   EL+ AL  +GY + P   QLL+ +Y  RS
Sbjct:   97 YGQGGVPPNVDPEAYSWFQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMF-DKTKSGRIDVAGFSALWKFLQQWRNLFQQYDRDRSGSISSTELQQALSQMGYNLSPQFTQLLVSRYCARS 224          
BLAST of FC918042 vs. ExPASy Swiss-Prot
Match: PEF1_HUMAN (Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.389e-18
Identity = 53/143 (37.06%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  334 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQAL-SSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGRRKLGLSFDSFVE 759
            YG    PP   P+    F+ VD D SG+I   EL+QAL +  +  F+  T  +++ +F +   S RI    F+ LW  + QW+ +F++YDRDRSG I   EL+ AL  +GY + P   QLL+ +Y  RS    + L  D F++
Sbjct:  106 YGQGGAPPNVDPEAYSWFQSVDSDHSGYISMKELKQALVNCNWSSFNDETCLMMINMF-DKTKSGRIDVYGFSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSANPAMQL--DRFIQ 245          
BLAST of FC918042 vs. ExPASy Swiss-Prot
Match: PEF1_RAT (Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.322e-18
Identity = 50/129 (38.76%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  334 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQAL-SSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRS 717
            YG    PP   P+    F+ VD D SG+I   EL+QAL +S +  F+  T  +++ +F       RI    F+ LW  L QW+ +F++YDRD SG I   EL+ AL  +GY + P   QLL+ +Y  RS
Sbjct:  105 YGQGGVPPNVDPEAYSWFQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKTG-RIDVVGFSALWKFLQQWKNLFQQYDRDHSGSISSTELQQALSQMGYNLSPQFTQLLVSRYCTRS 232          
BLAST of FC918042 vs. ExPASy Swiss-Prot
Match: PEF1_DANRE (Peflin OS=Danio rerio GN=pef1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.322e-18
Identity = 52/137 (37.96%), Postives = 82/137 (59.85%), Query Frame = 1
Query:  352 PPGTHPDVIRSFEMVDRDRSGFIDENELQQALSS-GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGRRKLGLSFDSFVE 759
            PPG +P+  + F  VD D+SG+I+  EL+QAL +     F+  T  +++ +F +   S R+    F+ LW+ L QWRA F+++DRDRSG I+  E+  AL  +GY + P  +Q L+++Y  R G   L L  D F++
Sbjct:   98 PPGVNPEAYQWFSTVDSDQSGYINAKELKQALMNFNNSSFNDETCIMMLNMF-DKTKSGRVDVFGFSALWTFLQQWRAAFQQFDRDRSGSINTNEMHQALSQMGYNLSPQFIQELVNRYSVRGGTGVLQL--DRFIQ 231          
BLAST of FC918042 vs. ExPASy Swiss-Prot
Match: PDCD6_MOUSE (Programmed cell death protein 6 OS=Mus musculus GN=Pdcd6 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.450e-17
Identity = 50/132 (37.88%), Postives = 80/132 (60.61%), Query Frame = 1
Query:  385 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGRRKLGLSFDSFVECGMVVK 777
            F+ VD+DRSG I +NELQQALS+G +  F+  T+R ++ +F +  +   +   EF  +W  +  W+ +F  YDRD SG ID  EL+ AL   GY +      +L+ K+D R GR +  ++FD F++  +V++
Sbjct:   32 FQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMF-DRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFD-RQGRGQ--IAFDDFIQGCIVLQ 159          
BLAST of FC918042 vs. ExPASy Swiss-Prot
Match: PDCD6_HUMAN (Programmed cell death protein 6 OS=Homo sapiens GN=PDCD6 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.712e-16
Identity = 49/132 (37.12%), Postives = 79/132 (59.85%), Query Frame = 1
Query:  385 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGRRKLGLSFDSFVECGMVVK 777
            F+ VD+DRSG I + ELQQALS+G +  F+  T+R ++ +F +  +   +   EF  +W  +  W+ +F  YDRD SG ID  EL+ AL   GY +      +L+ K+D R GR +  ++FD F++  +V++
Sbjct:   32 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMF-DRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFD-RQGRGQ--IAFDDFIQGCIVLQ 159          
The following BLAST results are available for this feature:
BLAST of FC918042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CML48_ARATH1.941e-4457.14Probable calcium-binding protein CML48 OS=Arabidop... [more]
CML49_ARATH5.469e-3952.98Probable calcium-binding protein CML49 OS=Arabidop... [more]
CML50_ARATH1.347e-3751.66Probable calcium-binding protein CML50 OS=Arabidop... [more]
PEF1_XENLA5.143e-2138.41Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1[more]
PEF1_MOUSE4.814e-1941.09Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1[more]
PEF1_HUMAN2.389e-1837.06Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1[more]
PEF1_RAT5.322e-1838.76Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1[more]
PEF1_DANRE5.322e-1837.96Peflin OS=Danio rerio GN=pef1 PE=2 SV=1[more]
PDCD6_MOUSE3.450e-1737.88Programmed cell death protein 6 OS=Mus musculus GN... [more]
PDCD6_HUMAN1.712e-1637.12Programmed cell death protein 6 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA92DH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA92DH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918042 ID=FC918042; Name=FC918042; organism=Citrus clementina; type=EST; length=808bp
AAGTCTCTCTCTCTCACTTCTCACGTTTGTGATCTTGTTCTGCTTCTGCT
CATAGCGTTGACGTTTTAATTTTTGTAAGTAAATTATTAAAAAATCCGGT
ACCAAATCACAAATCATAATCACCATCAGCATCATTGAATGTCAAATTAC
AGCGGATCCTACTCTTCATCTCAATCCTACGCGCCCTCTGCGCCTTCGCT
GCCGGAGACCCACAACAACTCCTCTTACAATAACTCATCTTCGGCTCAAA
GCTATTATGCCCAGCCTCCTCCGCCTCCGCCGCCGTCGCAGCAGCAGCCG
TACCCCGCGCCGAGTTACGGGCAGTTTTCGGCATATGGGCACTCCGCGTT
TCCGCCGGGGACCCACCCAGATGTGATAAGGAGCTTTGAAATGGTTGATA
GAGATAGAAGTGGGTTTATTGATGAGAATGAGTTGCAGCAAGCACTTTCT
TCTGGGTACCAGAGGTTTAGTCTCAGTACTATTAGATTGCTCATGTTTCT
TTTCAGGAATCCCCATGATTCGTTGAGAATTGGGCCTAAAGAATTTGCTG
ATTTGTGGAGTTGCCTTGGTCAATGGCGCGCTATATTTGAGAGATATGAT
CGAGACAGAAGTGGGAAAATTGATCTGATGGAATTGAGGGATGCTCTCTA
CAGCATTGGGTATGCAGTCCCACCTTCAGTTCTCCAGCTTTTGATGGACA
AGTATGATAATAGAAGTGGAAGGCGGAAGCTTGGACTCAGTTTCGACAGT
TTTGTTGAATGTGGAATGGTTGTAAAGGTGAGTCCACAAATTCCTACTAT
TTCTGGCT
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