FC918044

Overview
NameFC918044
Unique NameFC918044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length889
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPR3_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 5.302e-94
Identity = 185/273 (67.77%), Postives = 204/273 (74.73%), Query Frame = 1
Query:  109 SFLQAPMAALVPSTSVHS------LRSKSTRSLKTF-------CSAKIPNPMPAHINPNDPFLSKLXXXXXXSPEAFVNRPSNSGTLPYLDIYDSPTLMASPAQVERSATYNEHRXXXXXXXXXXXXXHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            S LQA M +L+P +S  S        S   R+LKTF        SAKIP P    INP DPFLS L      SPE  +NRP N+   PYLDI+DSP LM+SPAQVERS  YNEHR              GRIVYIGMPLVPAVTELVVAELMYLQW+DPK PIY+YINSTGTTRDDGE+VGMESEGFAIYD+LMQ+K EVHTV VGAAIG ACLLL+AGTKGKRFMMPHAK MIQQPR+PSSGL+PASDVLIRAKE + NRD LV+LL+KHTG
Sbjct:    3 SCLQASMNSLLPRSSSFSPHPPLSSNSSGRRNLKTFRYAFRAKASAKIPMPP---INPKDPFLSTLASIAANSPEKLLNRPVNADVPPYLDIFDSPQLMSSPAQVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPSSGLMPASDVLIRAKEVITNRDILVELLSKHTG 272          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPR_SYNE7 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942) GN=clpR PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.220e-33
Identity = 69/153 (45.10%), Postives = 106/153 (69.28%), Query Frame = 1
Query:  460 RIVYIGMPLVPA----------VTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+Y+GMPL  +          VTEL++A+L+YL++ +P+ PIY YINSTGT+   G+++G E+E FAI DT+  +K  VHT+ +G A+G A ++L+ GT G R  +PHA I++ QPR  + G   ASD+ IRAKE + N+ T++++ A++TG
Sbjct:   33 RIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYTGDAIGYETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSGGTPGNRASLPHATIVLNQPRTGAQG--QASDIQIRAKEVLANKRTMLEIFARNTG 183          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPR_SYNY3 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803) GN=clpR PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.519e-32
Identity = 72/153 (47.06%), Postives = 106/153 (69.28%), Query Frame = 1
Query:  460 RIVYIGMPLVPA----------VTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RIVY+GMPL  +          VT+L++A+L+YLQ+ DP  PIY YINSTGT+   G++VG E+E FAI DTL  +K  VHT+ +G A+G A ++L++GTKG R  +PHA I++ Q R  + G   A+D+ IRAKE + N+ T++++L+ +TG
Sbjct:   31 RIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDDPDKPIYFYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGTAAMILSSGTKGYRASLPHATIVLNQNRTGAQG--QATDIQIRAKEVISNKQTMLEILSLNTG 181          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPR4_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.381e-31
Identity = 101/270 (37.41%), Postives = 142/270 (52.59%), Query Frame = 1
Query:   97 AMSTSF--LQAPMAALVPSTSVHSLRSK----STRSLKTFCSAKIPNPMPAHINPNDPFLSKLXXXXXXSPEAFVNRPSNSGTLPYLDIYDSPTLMASPAQVERSATYNEHRXXXXXXXXXXXXXHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            A +TSF  L+A  +A++PS S  +LRSK    S+ SL+   S    +P       +D   +KL      +P  F +     G +  +  +   +    P     S  +                   RIVY+GM LVP+VTEL++AE +YLQ+ D + PIYLYINSTGTT+ +GE +G ++E FAIYD +  +K  + T+ VG A G A LLL AG KG R  +P + IMI+QP     G   A+DV I  KE    +  +VKL +KH G
Sbjct:    6 ATATSFTTLRARTSAIIPS-STRNLRSKPRFSSSSSLRASLSNGFLSPYTGGSISSDLCGAKLRAESL-NPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKN-----------------RIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTK-NGEKLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQG--QATDVEIARKEIKHIKTEMVKLYSKHIG 253          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPR1_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.573e-29
Identity = 69/144 (47.92%), Postives = 96/144 (66.67%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRL-PSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI Y+GMP+VPAVTEL+VA+ M+L + +P  PIYLYINS GT  +  E+VG E+E +AI DT+   K +V+T+  G A G A +LL+ G KG R + PH+   +  P++  SSG   A D+ I+AKE   N +  ++LLAK TG
Sbjct:  180 RICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKLYLPKVNRSSG--AAIDMWIKAKELDANTEYYIELLAKGTG 321          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_THEYD (ATP-dependent Clp protease proteolytic subunit OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=clpP PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.509e-27
Identity = 67/143 (46.85%), Postives = 92/143 (64.34%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI++IG  +   V  +V+A+L++LQ  DP+  I++YINS G         GM S G AIYDT+  +K ++ T  +G A  MAC+LLAAGTKGKRF +PH+++MI QP     G   A+DV I AKE +  +D L  +LAKHTG
Sbjct:   28 RIIFIGTEINDHVANVVIAQLLFLQTEDPEKDIHIYINSPG---------GMVSSGLAIYDTMQYVKPDIATYCIGQASSMACVLLAAGTKGKRFALPHSRVMIHQPIGGFYG--QATDVEIHAKEILKMKDLLNNILAKHTG 159          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_THESQ (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp. (strain RQ2) GN=clpP PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.509e-27
Identity = 66/143 (46.15%), Postives = 92/143 (64.34%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RIV++G P+   V  LV+A+L++L+  DP   +YLYINS G         G  + G AIYDT+  +KC+V T+ VG A  MA +LLAAG KGKR+ +P+A+IMI QP   + G  PA DV I  +E +  +D L ++L+KHTG
Sbjct:   37 RIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG---------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEG--PAKDVEIITRELLRIKDLLNRILSKHTG 168          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_THEP1 (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=clpP PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.509e-27
Identity = 66/143 (46.15%), Postives = 92/143 (64.34%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RIV++G P+   V  LV+A+L++L+  DP   +YLYINS G         G  + G AIYDT+  +KC+V T+ VG A  MA +LLAAG KGKR+ +P+A+IMI QP   + G  PA DV I  +E +  +D L ++L+KHTG
Sbjct:   37 RIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG---------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEG--PAKDVEIITRELLRIKDLLNRILSKHTG 168          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_THEMA (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.509e-27
Identity = 66/143 (46.15%), Postives = 92/143 (64.34%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RIV++G P+   V  LV+A+L++L+  DP   +YLYINS G         G  + G AIYDT+  +KC+V T+ VG A  MA +LLAAG KGKR+ +P+A+IMI QP   + G  PA DV I  +E +  +D L ++L+KHTG
Sbjct:   37 RIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG---------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEG--PAKDVEIITRELLRIKDLLNRILSKHTG 168          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJB (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. GN=clpP2 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.006e-25
Identity = 62/143 (43.36%), Postives = 89/143 (62.24%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G  +   +  L+VA+++YL+  DP+  IYLYINS G         G    G AIYDT+  ++ +V T+ +G A  M   LLA GTKGKR  +PHA+IMI QP   + G  PA+D+ I+AKE +  +++L  LLA HTG
Sbjct:   26 RIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPG---------GSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQPLGGAQG--PATDIEIQAKEILFIKNSLNSLLAYHTG 157          
The following BLAST results are available for this feature:
BLAST of FC918044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPR3_ARATH5.302e-9467.77ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPR_SYNE75.220e-3345.10Putative ATP-dependent Clp protease proteolytic su... [more]
CLPR_SYNY31.519e-3247.06Putative ATP-dependent Clp protease proteolytic su... [more]
CLPR4_ARATH6.381e-3137.41ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPR1_ARATH4.573e-2947.92ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPP_THEYD2.509e-2746.85ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THESQ2.509e-2746.15ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP12.509e-2746.15ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEMA2.509e-2746.15ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNJB4.006e-2543.36ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918044 ID=FC918044; Name=FC918044; organism=Citrus clementina; type=EST; length=889bp
CCAGTTTCTTCTTCACTTCAAAATCAAAGTTCAAAACTACAAAGCACAAT
CAAAACAGAACTCACCAATTTAATTAGAAATAAACAAAAATAAAAAGCCA
TGTCGACGAGTTTCCTGCAAGCACCCATGGCGGCTTTAGTCCCGTCAACT
TCAGTTCACTCTCTTAGAAGCAAAAGCACCCGAAGTTTGAAGACCTTTTG
CTCAGCTAAAATTCCCAATCCCATGCCAGCACACATTAATCCTAACGACC
CCTTTCTTTCTAAACTCGCCGCTGCCGCGGCAGCCTCTCCGGAAGCGTTT
GTCAATCGTCCTTCCAATTCCGGTACGCTGCCGTATTTGGATATCTACGA
TTCTCCCACTCTTATGGCCTCCCCTGCCCAAGTGGAAAGATCGGCTACAT
ACAATGAACATAGGCCAGATACACCGCCTCCGGATTTGCCTTCGCTGCTT
CTTCATGGGAGGATTGTATACATTGGCATGCCGTTGGTGCCTGCTGTCAC
AGAGCTTGTTGTGGCAGAACTGATGTACTTGCAGTGGATGGATCCCAAGG
CACCTATATATCTTTATATTAATTCCACGGGTACGACTCGTGATGATGGT
GAATCGGTTGGGATGGAGAGTGAAGGCTTTGCCATTTATGATACATTGAT
GCAAATGAAGTGTGAGGTACATACAGTTGCTGTTGGAGCTGCTATAGGCA
TGGCTTGTCTACTACTTGCTGCTGGAACTAAAGGAAAACGGTTTATGATG
CCTCATGCCAAAATCATGATTCAGCAACCTCGTCTTCCATCATCTGGGTT
GCTGCCCGCTAGTGATGTTCTTATTCGTGCAAAAGAAGCAATGGTAAACA
GAGACACACTTGTAAAACTTCTTGCCAAGCACACTGGAA
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