FC918046

Overview
NameFC918046
Unique NameFC918046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length802
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918046 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.123e-20
Identity = 49/174 (28.16%), Postives = 92/174 (52.87%), Query Frame = 3
Query:  267 ERDIRIRSLFNFFDAANSGYLDYAQIESGLSALQIPAQYKYAKDLFKVCDANRDGRVDYQEFRRYMDIKEMELYKIFQTIDVEHNGCILPEELWDALVKAGIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVNIGEQAVIPEGISKHVQRS 788
            E   R  +LF   D    G +D  +++ GL +L IP      + +F   D N+DG++D++EF +Y+   E ++   F+++D  ++G I P E+  +L   G+ IS+++    ++ +D D    + + EWRD+ L  P    IE I   W+    ++IG+   IP+  ++  ++S
Sbjct:   19 EPPTRYETLFRALDRNGDGVVDIGELQQGLQSLGIPLGQDAEEKIFTTGDVNKDGKLDFEEFMKYLKDHEKKMKLAFKSLDKNNDGKIEPSEIVQSLQMLGLHISEKQAELILQSIDSDGTMTVDWNEWRDYFLFNP-VTDIEEIIRFWKHSTGIDIGDSLTIPDEFTEDEKKS 191          
BLAST of FC918046 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.269e-20
Identity = 49/174 (28.16%), Postives = 92/174 (52.87%), Query Frame = 3
Query:  267 ERDIRIRSLFNFFDAANSGYLDYAQIESGLSALQIPAQYKYAKDLFKVCDANRDGRVDYQEFRRYMDIKEMELYKIFQTIDVEHNGCILPEELWDALVKAGIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVNIGEQAVIPEGISKHVQRS 788
            E   R  +LF   D    G +D  +++ GL +L IP      + +F   D N+DG++D++EF +Y+   E ++   F+++D  ++G I   E+  +L   G+ IS+++    ++ +D D    + + EWRD+ L  P  A IE I   W+    ++IG+   IP+  ++  ++S
Sbjct:   19 EPPTRYETLFQALDRNGDGVVDIRELQEGLKSLGIPLGQDAEEKIFTTGDVNKDGKLDFEEFMKYLKDHEKKMKLAFKSLDKNNDGKIEASEIVQSLQTLGLTISEQQAELILQSIDADGTMTVDWNEWRDYFLFNP-VADIEEIIRFWKHSTGIDIGDSLTIPDEFTEEERKS 191          
BLAST of FC918046 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.242e-19
Identity = 51/186 (27.42%), Postives = 94/186 (50.54%), Query Frame = 3
Query:  231 DHVLLALRESKEERDIRIRSLFNFFDAANSGYLDYAQIESGLSALQIPAQYKYAKDLFKVCDANRDGRVDYQEFRRYMDIKEMELYKIFQTIDVEHNGCILPEELWDALVKAGIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVNIGEQAVIPEGISKHVQRS 788
            D VL        E+  R  +LF   D    G +D  +++ GL  L IP      + +F   D N+DG++D++EF +Y+   E ++   F+++D  ++G I   E+  +L   G+ IS+++    ++ +D D    + + EWRD+ L  P    IE I   W+    ++IG+   IP+  ++  ++S
Sbjct:    7 DFVLPTAACQDAEQPTRYETLFQALDRNGDGVVDIGELQEGLRNLGIPLGQDAEEKIFTTGDVNKDGKLDFEEFMKYLKDHEKKMKLAFKSLDKNNDGKIEASEIVQSLQTLGLTISEQQAELILQSIDVDGTMTVDWNEWRDYFLFNP-VTDIEEIIRFWKHSTGIDIGDSLTIPDEFTEDEKKS 191          
BLAST of FC918046 vs. ExPASy Swiss-Prot
Match: SCMC1_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.119e-19
Identity = 48/174 (27.59%), Postives = 92/174 (52.87%), Query Frame = 3
Query:  267 ERDIRIRSLFNFFDAANSGYLDYAQIESGLSALQIPAQYKYAKDLFKVCDANRDGRVDYQEFRRYMDIKEMELYKIFQTIDVEHNGCILPEELWDALVKAGIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVNIGEQAVIPEGISKHVQRS 788
            E   R  +LF   D    G +D ++++ GL +L IP      + +F   D N+DG++D++EF +Y+   E ++   F+++D  ++G I   E+  +L   G+ IS+++    ++ +D D    + + EWRD+ L  P    IE I   W+    ++IG+   IP+  ++  ++S
Sbjct:   19 EPPTRYETLFQKLDRNGDGVVDISELQEGLKSLGIPLGQDAEEKIFTTGDVNKDGKLDFEEFMKYLKDHEKKMKLAFKSLDKNNDGKIEASEIVQSLQILGLTISEQQAELILQSIDADGTMTVDWNEWRDYFLFNP-VTDIEEIIRFWKHSTGIDIGDSLTIPDEFTEDEKKS 191          
BLAST of FC918046 vs. ExPASy Swiss-Prot
Match: SCMC2_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus tropicalis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.983e-17
Identity = 54/214 (25.23%), Postives = 105/214 (49.07%), Query Frame = 3
Query:  123 TGAGAGHAVERVGLPKMESTRSAS-CNPVRKSGPVTMDHVLLALRESKEERDIRIRSLFNFFDAANSGYLDYAQIESGLSALQIPAQYKYAKDLFKVCDANRDGRVDYQEFRRYMDIKEMELYKIFQTIDVEHNGCILPEELWDALVKAGIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVNIGEQAVIPE 761
            T  GA H  +    P + +  +A  C  +   GP               E + R++ LF   D    G +    +  GL  L +       + + K  D ++DG++D++EF  Y+   E +L  +F+++D +++G I  +E+  +L   G+ IS+++  + ++ +DK+    I + EWRD+ LL+P E  I  I  +W+   + ++GE  ++P+
Sbjct:   21 TVGGAPHTHDTPASPSLAAALAADPCGGLVCGGP---------------EHETRLQILFQELDVNKDGGICINDLAVGLKRLGVHRTELELRKIVKAGDKDQDGQLDFEEFVHYLRDHEKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVNISEQQAEKILKSMDKNGTMTIDWNEWRDYHLLHPAE-NIPEIILYWKHSTIFDVGENLLVPD 218          
BLAST of FC918046 vs. ExPASy Swiss-Prot
Match: SCMC2_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.285e-16
Identity = 54/215 (25.12%), Postives = 105/215 (48.84%), Query Frame = 3
Query:  123 TGAGAGHAVERVGLPKMESTRSAS--CNPVRKSGPVTMDHVLLALRESKEERDIRIRSLFNFFDAANSGYLDYAQIESGLSALQIPAQYKYAKDLFKVCDANRDGRVDYQEFRRYMDIKEMELYKIFQTIDVEHNGCILPEELWDALVKAGIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVNIGEQAVIPE 761
            T +GA H+ E    P + +   A+  C  +   GP               E + R++ LF   D    G +    +  GL  L +       + + K  D ++DG++D+ EF  Y+   E +L  +F+++D +++G I  +E+  +L   G+ IS+++  + ++ +DK+    I + EWRD+ LL+  E  I  I  +W+   + ++GE  ++P+
Sbjct:   21 TVSGAPHSHETPASPSLAAAALAADPCGGLLCGGP---------------EHERRLQILFQELDVNKDGAICINDLAVGLKRLGVHRTELELRKIVKAGDKDQDGQLDFDEFVHYLRDHEKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVNISEQQAEKILKSMDKNGTMTIDWNEWRDYHLLHSAE-NIPEIILYWKHSTIFDVGENLLVPD 219          
BLAST of FC918046 vs. ExPASy Swiss-Prot
Match: SCMC1_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.193e-16
Identity = 45/170 (26.47%), Postives = 87/170 (51.18%), Query Frame = 3
Query:  279 RIRSLFNFFDAANSGYLDYAQIESGLSALQIPAQYKYAKDLFKVCDANRDGRVDYQEFRRYMDIKEMELYKIFQTIDVEHNGCILPEELWDALVKAGIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVNIGEQAVIPEGISKHVQRS 788
            R   LF+  D    G +D  +++ GL A+ +       + +    D N+DG +D+ EF RY++  E ++   F ++D   +G I   E+ ++L   GI IS E   + ++ +D D    + + EWRD  L  P +  I+ I  +W+   +++IG+   IP+  ++  +++
Sbjct:   23 RYAELFHKLDVNKDGKVDIVELQEGLKAMGMAVGKGAEEKIVAAGDTNKDGHLDFGEFIRYLEEHEKKMKIAFTSLDKNKDGKIESAEIMNSLKTLGINISLEHAEKILKSMDADGTLTVDWNEWRDHFLFNPAD-NIQQIIRYWKHSTVLDIGDSLTIPDEFTEEEKKT 191          
BLAST of FC918046 vs. ExPASy Swiss-Prot
Match: SCM1A_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-A OS=Xenopus laevis GN=slc25a24-A PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.740e-16
Identity = 44/170 (25.88%), Postives = 87/170 (51.18%), Query Frame = 3
Query:  279 RIRSLFNFFDAANSGYLDYAQIESGLSALQIPAQYKYAKDLFKVCDANRDGRVDYQEFRRYMDIKEMELYKIFQTIDVEHNGCILPEELWDALVKAGIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVNIGEQAVIPEGISKHVQRS 788
            R   LF+  D    G +D  +++ GL A+ +       + + +  D N+DG +D+ EF RY++  E ++   F ++D   +G I   E+ ++L   GI IS +   + ++ +D D    + + EWRD  L  P +  I+ I   W+   +++IG+   IP+  ++  +++
Sbjct:   23 RYAELFHKLDVNKDGKVDILELQEGLKAMGMAVGKGAEEKIVEAGDTNKDGHLDFGEFMRYLEEHEKKMKIAFTSLDKNKDGKIESSEVMNSLKTLGINISLDHAEKILKSMDSDGTLTVDWNEWRDHFLFNPAD-NIQQIIRFWKHSTVLDIGDSLTIPDEFTEEEKKT 191          
BLAST of FC918046 vs. ExPASy Swiss-Prot
Match: SCM1B_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-B PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.884e-16
Identity = 44/170 (25.88%), Postives = 88/170 (51.76%), Query Frame = 3
Query:  279 RIRSLFNFFDAANSGYLDYAQIESGLSALQIPAQYKYAKDLFKVCDANRDGRVDYQEFRRYMDIKEMELYKIFQTIDVEHNGCILPEELWDALVKAGIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVNIGEQAVIPEGISKHVQRS 788
            R   LF+  D    G +D  +++ GL A+ +       + +    D N+DG +D+ EF RY++  E ++   F ++D   +G I   E+ ++L   GI+IS +   + ++ +D D    + + EWRD  L  P +  I+ I  +W+   +++IG+   IP+  ++  +++
Sbjct:   23 RYEELFHKLDVNKDGKVDILELQEGLKAMGMEVGKGAEEKIVAAGDTNKDGHLDFGEFIRYLEEHEKKMKIAFTSLDKNKDGKIESAEIMNSLKVLGIKISLDHADKILKSMDSDGTLTVDWNEWRDHFLFNPAD-NIQQIIRYWKHSTVLDIGDSLTIPDEFTEEEKKT 191          
BLAST of FC918046 vs. ExPASy Swiss-Prot
Match: SCM2B_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-2-B OS=Danio rerio GN=slc25a25b PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.421e-15
Identity = 40/136 (29.41%), Postives = 81/136 (59.56%), Query Frame = 3
Query:  354 LSALQIPAQYKYAKDLFKVCDANRDGRVDYQEFRRYMDIKEMELYKIFQTIDVEHNGCILPEELWDALVKAGIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVNIGEQAVIPE 761
            L + +  +  K+ K + K  D + DG++D++EF  Y+   E +L  +F+++D +++G I  +E+  +L   G+ IS+E+  + ++ +DK+    I + EWRD+ LL+P E  I  I  +W+   + ++GE  ++P+
Sbjct:   40 LPSQEFDSYRKWRKKVVKAGDKDLDGQLDFEEFVHYLRDHEKKLRLVFKSLDKKNDGHIDSQEIMQSLRDLGVHISEEQAEKILKSMDKNGTMTIDWNEWRDYHLLHPAE-NIPEIILYWKHSTIFDVGESMLVPD 174          
The following BLAST results are available for this feature:
BLAST of FC918046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SCMC1_MOUSE1.123e-2028.16Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_RABIT4.269e-2028.16Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_HUMAN1.242e-1927.42Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_BOVIN2.119e-1927.59Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_XENTR1.983e-1725.23Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_XENLA1.285e-1625.12Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_XENTR2.193e-1626.47Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1A_XENLA3.740e-1625.88Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1B_XENLA4.884e-1625.88Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM2B_DANRE1.421e-1529.41Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YD14RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YD14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918046 ID=FC918046; Name=FC918046; organism=Citrus clementina; type=EST; length=802bp
CGGAAAAGGAAACGATTTTTCAATTTCCTTTATCAGATTATACATACAAG
TTCCAGATTGAATCGATGCTTGTGGAGCAACAATCGAATCTCGTAATTTT
GATTAAAATCTAGGGGCAGATGACCGGAGCAGGGGCAGGACACGCGGTGG
AACGCGTCGGATTGCCAAAGATGGAGTCGACCCGCTCCGCTTCATGCAAC
CCGGTGAGGAAATCGGGTCCGGTCACGATGGACCACGTGCTGCTCGCGTT
ACGCGAGAGCAAGGAAGAGAGGGACATCCGAATCCGGAGCCTCTTCAATT
TCTTCGATGCGGCGAATTCCGGATACTTGGATTACGCGCAGATCGAGAGC
GGGTTGTCGGCGCTGCAGATTCCGGCACAGTACAAGTACGCGAAGGATTT
GTTCAAAGTCTGCGACGCAAACAGAGACGGACGCGTCGATTATCAGGAGT
TTCGTCGATACATGGACATTAAAGAGATGGAGCTTTATAAGATTTTTCAA
ACTATTGATGTCGAGCACAATGGATGCATTTTGCCCGAAGAGCTTTGGGA
CGCGCTTGTTAAGGCTGGGATCGAGATTAGTGACGAGGAATTGGCTCGTT
TTGTGGAGCATGTTGATAAGGATAATAATGGAATCATAACTTTTGAAGAA
TGGAGAGATTTCCTTCTACTCTATCCTCATGAGGCAACTATTGAAAATAT
TTATCATCATTGGGAGAGGGTATGCCTCGTAAATATTGGAGAACAGGCTG
TTATTCCAGAAGGCATCAGTAAACATGTTCAGAGAAGCAAATACTTTATT
GC
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