FC918047

Overview
NameFC918047
Unique NameFC918047
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length898
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918047 vs. ExPASy Swiss-Prot
Match: YIF1B_RAT (Protein YIF1B OS=Rattus norvegicus GN=Yif1b PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.150e-11
Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:  358 ILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE--PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGK 645
            +     E V  NI R+   S  +YYF V+  YV  KL +++FP+LH+    +  +  PV        P +DINAPDLYIP MAF TY+++AG  LG Q +
Sbjct:   85 LAAQGKELVDKNIDRFIPVSKLKYYFAVDTVYVGKKLGLLVFPYLHQDWEVQYQQDTPVA-------PRFDINAPDLYIPAMAFITYILVAGLALGTQDR 177          
BLAST of FC918047 vs. ExPASy Swiss-Prot
Match: YIF1B_MOUSE (Protein YIF1B OS=Mus musculus GN=Yif1b PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.150e-11
Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:  358 ILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE--PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGK 645
            +     E V  NI R+   S  +YYF V+  YV  KL +++FP+LH+    +  +  PV        P +DINAPDLYIP MAF TY+++AG  LG Q +
Sbjct:   85 LAAQGKELVDKNIDRFIPVSKLKYYFAVDTVYVGKKLGLLVFPYLHQDWEVQYQQDTPVA-------PRFDINAPDLYIPAMAFITYILVAGLALGTQDR 177          
BLAST of FC918047 vs. ExPASy Swiss-Prot
Match: YIF1B_HUMAN (Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.962e-11
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  358 ILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE--PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGK 645
            +     E V  NI R+   +  +YYF V+  YV  KL ++ FP+LH+    +  +  PV        P +D+NAPDLYIP MAF TYV++AG  LG Q +
Sbjct:   88 LAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVA-------PRFDVNAPDLYIPAMAFITYVLVAGLALGTQDR 180          
BLAST of FC918047 vs. ExPASy Swiss-Prot
Match: YF1BA_XENLA (Protein YIF1B-A OS=Xenopus laevis GN=yif1b-A PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.563e-11
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  358 ILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE--PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGK 645
            +     E +  NI R    S  +YYF V+  YV  K+ +++FP++H+    R  +  PV        P +DINAPDLYIP MAF TY+++AG  LG Q +
Sbjct:   74 LASQGKEMMDKNIDRIIPVSKIKYYFAVDTVYVGKKIGLLMFPYMHQDWEVRYQQDTPVA-------PRFDINAPDLYIPVMAFVTYILVAGLALGTQSR 166          
BLAST of FC918047 vs. ExPASy Swiss-Prot
Match: YIF1B_XENTR (Protein YIF1B OS=Xenopus tropicalis GN=yif1b PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.347e-11
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  358 ILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE--PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGK 645
            +     E +  NI R    S  +YYF V+  YV  K+ +++FP++H+    R  +  PV        P +DINAPDLYIP MAF TY+++AG  LG Q +
Sbjct:   74 LASQGKEMMDKNIDRIIPVSKIKYYFAVDTVYVGKKIGLLMFPYMHQDWEVRYQQDTPVA-------PRFDINAPDLYIPVMAFITYILVAGLALGTQSR 166          
BLAST of FC918047 vs. ExPASy Swiss-Prot
Match: YF1BB_XENLA (Protein YIF1B-B OS=Xenopus laevis GN=yif1b-B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.347e-11
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  358 ILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE--PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGK 645
            +     E +  NI R    S  +YYF V+  YV  K+ +++FP++H+    R  +  PV        P +DINAPDLYIP MAF TY+++AG  LG Q +
Sbjct:   74 LASQGKEMMDKNIDRIIPVSKIKYYFAVDTVYVGKKIGLLMFPYMHQDWEVRYQQDTPVA-------PRFDINAPDLYIPVMAFITYILVAGLALGTQSR 166          
BLAST of FC918047 vs. ExPASy Swiss-Prot
Match: YIF1A_HUMAN (Protein YIF1A OS=Homo sapiens GN=YIF1A PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  358 ILGSSSEYVQSNISRYFSDPQ--YYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQ 639
            I     + V   + R+ S  +  Y+F V+  YV  KL +++FP+ H+ +W    E    R +  PP  D+NAPDLYIP MAF TYV+LAG  LG+Q
Sbjct:   70 IASHGKDMVHKELHRFVSVSKLKYFFAVDTAYVAKKLGLLVFPYTHQ-NW----EVQYSRDAPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQ 160          
BLAST of FC918047 vs. ExPASy Swiss-Prot
Match: YIF1A_DANRE (Protein YIF1A OS=Danio rerio GN=yif1a PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 44/140 (31.43%), Postives = 65/140 (46.43%), Query Frame = 1
Query:  226 NMGTQPGPGMPRPAADAQPNPFGNAFXXXXXXXXXXXXXXXXEKILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQ 639
            NM   P  G      +   +P  NA                   +     + V   I+R+ S    +Y+F V+ +YV  KL +++FP+ H+    R       R +   P +D+NAPDLYIP MAF TY++LAG  LG+Q
Sbjct:   48 NMAEMPAGGQEPGVGNIFADPMANA------------AMMYGSTLANQGKDIVNKEINRFMSVNKLKYFFAVDTKYVMKKLLLLMFPYTHQDWEVRYH-----RDTPLTPRHDVNAPDLYIPTMAFITYILLAGMALGIQ 170          
BLAST of FC918047 vs. ExPASy Swiss-Prot
Match: YIF1A_BOVIN (Protein YIF1A OS=Bos taurus GN=YIF1A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 46/137 (33.58%), Postives = 64/137 (46.72%), Query Frame = 1
Query:  235 TQPGPGMPRPAADAQPNPFGNAFXXXXXXXXXXXXXXXXEKILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQ 639
            +QPG G P P AD   N                        I     + +   + R+ S    +Y+F V+  YV  KL +++FP+ H+    + +  V       PP  D+NAPDLYIP MAF TYV+LAG  LG+Q
Sbjct:   35 SQPG-GYPAPGADVAFN-----VNHLLGDPMANMAMAYGSSIASHGKDMMNKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEVQYSRDVP-----LPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQ 160          
The following BLAST results are available for this feature:
BLAST of FC918047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
YIF1B_RAT1.150e-1141.00Protein YIF1B OS=Rattus norvegicus GN=Yif1b PE=2 S... [more]
YIF1B_MOUSE1.150e-1141.00Protein YIF1B OS=Mus musculus GN=Yif1b PE=2 SV=2[more]
YIF1B_HUMAN1.962e-1140.00Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1[more]
YF1BA_XENLA2.563e-1139.00Protein YIF1B-A OS=Xenopus laevis GN=yif1b-A PE=2 ... [more]
YIF1B_XENTR3.347e-1139.00Protein YIF1B OS=Xenopus tropicalis GN=yif1b PE=2 ... [more]
YF1BB_XENLA3.347e-1139.00Protein YIF1B-B OS=Xenopus laevis GN=yif1b-B PE=2 ... [more]
YIF1A_HUMAN7.457e-1141.67Protein YIF1A OS=Homo sapiens GN=YIF1A PE=1 SV=2[more]
YIF1A_DANRE7.457e-1131.43Protein YIF1A OS=Danio rerio GN=yif1a PE=2 SV=1[more]
YIF1A_BOVIN9.739e-1133.58Protein YIF1A OS=Bos taurus GN=YIF1A PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA13DD12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA13DD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918047 ID=FC918047; Name=FC918047; organism=Citrus clementina; type=EST; length=898bp
CTCTATCGCCGTTACATCTCGTTCCAGTTTTCAGAGTTTACACATCCAAG
CGGTCGAGCTCCGATCAAACGTCGCCGGAAAACCCATCAATCTCCGATAT
TCTGCGGCCAAACTATCCGGAGCTAGGGCTTCTAGAGGAAGAGAAAGTTC
AGTATAGGATATTGTAGGAGCACTGTGCAGGTTTATGTAACTAAGGCTGT
TCAAGTGAGTTTAGAAATGTATAGCAATATGGGAACACAGCCTGGGCCTG
GGATGCCCAGACCAGCTGCAGATGCCCAGCCCAATCCATTCGGGAATGCA
TTTTACGGTGCTGGTTCAGGACTGATCCGAGGTGGACTGGGTGCATACGG
AGAAAAGATATTGGGATCTAGCTCTGAGTATGTGCAAAGCAATATAAGTA
GGTATTTTTCTGATCCTCAGTACTATTTCCAAGTGAATGACCAATATGTG
AGGAACAAATTGAAGGTTGTTCTCTTTCCATTCCTTCACAGGGGCCATTG
GACACGAATAACTGAGCCAGTGGGTGGTAGGCTTTCTTATAAACCTCCAA
TATATGATATAAATGCACCAGATTTGTACATTCCATTTATGGCATTTGGC
ACCTATGTCGTCCTCGCTGGCTTCACATTGGGTCTTCAAGGAAAGTGAGT
GTTATCAAATTTTTCAATATTATGCTGCTTCTCATTTATCTTTTGGAATT
TGAGGGTCTCCTAACTAGATTTGTCTAGTAATGAACACTTTTCTTTTCTT
CACTCCAAAGATTTAACTGTGGCACTCCTTGGTTCCAGCTCCTAATGATG
GTGTTATACAATTAGTAAAAGGAGCAAGATGTAACTGTTATTTGCTTGCA
TGTGTAGCAATGTATTTTTTCATTTTTGGTTTCCTATTTACTTCTATT
back to top