FC918054

Overview
NameFC918054
Unique NameFC918054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918054 vs. ExPASy Swiss-Prot
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 2.370e-68
Identity = 123/177 (69.49%), Postives = 146/177 (82.49%), Query Frame = 1
Query:    1 STSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGKRP 525
            S+SP  A++R  +  S+R QHLLDK+VPHVL+RW+ CL VV IY VRVY V+GFYIITY +GIYLLNL++ FLSPQ DPE S   G +LPTR SDE+RPFVRRLPEFKFW  + R+F IGF++TFF  FDVPVFWPILLFYW+MLF LTMR+QI HMIKYRYVPFS GK++Y GK+P
Sbjct:   30 SSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQY-GKKP 205          
BLAST of FC918054 vs. ExPASy Swiss-Prot
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.301e-66
Identity = 115/176 (65.34%), Postives = 139/176 (78.98%), Query Frame = 1
Query:    1 STSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPE---YSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGK 519
            S S    + +  +   R YQH LDK+ PH  +RW+  L V  IY +RVY +QGFYII YGLGIYLLNLL+GFLSP +DPE    SDGP+LPTRGSDEF+PF+RRLPEFKFWY +T++FCI F++TFFS FDVPVFWPILL YW++LF LTMRRQI HMIKY+Y+PFS GKQ+Y G+
Sbjct:    8 SGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKYGGR 183          
BLAST of FC918054 vs. ExPASy Swiss-Prot
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 4.626e-64
Identity = 111/176 (63.07%), Postives = 139/176 (78.98%), Query Frame = 1
Query:    1 STSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEY--SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGKR 522
            S S    + +  +   R YQ+ LDK+ PH  +RW+  L    IY +RVY + GFYII+YGLGIYLLNLL+GFLSP +DPE   SDG TLPTRGSDEF+PF+RRLPEFKFWY +T++FCI F++TFFS FDVPVFWPILL YW++LF LTMRRQI HMIK++Y+PFS+GKQ+Y G++
Sbjct:    8 SGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYSGRK 183          
BLAST of FC918054 vs. ExPASy Swiss-Prot
Match: RER1_BOVIN (Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.492e-54
Identity = 97/172 (56.40%), Postives = 128/172 (74.42%), Query Frame = 1
Query:   16 AAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGK 519
            + + R+   + + YQ  LDKS PH   RWVV L +  IY +RVYL+QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKFW+  T+   +  V TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK+ Y GK
Sbjct:   16 SVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRTYKGK 187          
BLAST of FC918054 vs. ExPASy Swiss-Prot
Match: RER1_RAT (Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.544e-54
Identity = 95/172 (55.23%), Postives = 129/172 (75.00%), Query Frame = 1
Query:   16 AAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGK 519
            + + R+   + + YQ  LDKS P+   RWVV L +  +Y +RVYL+QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKFW+  T+   +  + TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK+RY GK
Sbjct:   16 SVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGK 187          
BLAST of FC918054 vs. ExPASy Swiss-Prot
Match: RER1_PONAB (Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.544e-54
Identity = 96/172 (55.81%), Postives = 129/172 (75.00%), Query Frame = 1
Query:   16 AAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGK 519
            + + R+   + + YQ  LDKS P+   RWVV L +  +Y +RVYL+QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKFW+  T+   +  V TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK+RY GK
Sbjct:   16 SVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYRGK 187          
BLAST of FC918054 vs. ExPASy Swiss-Prot
Match: RER1_MOUSE (Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.544e-54
Identity = 95/172 (55.23%), Postives = 129/172 (75.00%), Query Frame = 1
Query:   16 AAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGK 519
            + + R+   + + YQ  LDKS P+   RWVV L +  +Y +RVYL+QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKFW+  T+   +  + TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK+RY GK
Sbjct:   16 SVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGK 187          
BLAST of FC918054 vs. ExPASy Swiss-Prot
Match: RER1_HUMAN (Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.544e-54
Identity = 96/172 (55.81%), Postives = 129/172 (75.00%), Query Frame = 1
Query:   16 AAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGK 519
            + + R+   + + YQ  LDKS P+   RWVV L +  +Y +RVYL+QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKFW+  T+   +  V TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK+RY GK
Sbjct:   16 SVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYRGK 187          
BLAST of FC918054 vs. ExPASy Swiss-Prot
Match: RER1_CHICK (Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 7.402e-54
Identity = 95/172 (55.23%), Postives = 128/172 (74.42%), Query Frame = 1
Query:   16 AAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGK 519
            + + R+   + + YQ  LDKS P+   RW+V L +  IY +RVYL+QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPTR ++EFRPF+RRLPEFKFW+  T+   +    TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK++Y GK
Sbjct:   16 SVVYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATKGILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRKYKGK 187          
BLAST of FC918054 vs. ExPASy Swiss-Prot
Match: RER1_CAEEL (Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 5.490e-49
Identity = 89/170 (52.35%), Postives = 121/170 (71.18%), Query Frame = 1
Query:   25 SRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDP-----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGK 519
            SR+ +++  +YQ+ LD+  PH   RWV+ L  +  +A R+ L+QGFYI+ Y +GIY LNL + FL+P IDP     +  DGP LP++ +DEFRPF+RRLPEFKFW+   ++  I    TFF  FDVPVFWPIL+ Y+ +L  LT++RQIMHMIKYRY+PF++GK R  GK
Sbjct:   13 SRFFHSLEVKYQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGIYYLNLFLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATLIAITCTFFEFFDVPVFWPILVMYFFILTFLTLKRQIMHMIKYRYIPFTVGKPRMAGK 182          
The following BLAST results are available for this feature:
BLAST of FC918054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1C_ARATH2.370e-6869.49Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=... [more]
RER1A_ARATH1.301e-6665.34Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=... [more]
RER1B_ARATH4.626e-6463.07Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=... [more]
RER1_BOVIN1.492e-5456.40Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2[more]
RER1_RAT2.544e-5455.23Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=... [more]
RER1_PONAB2.544e-5455.81Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1[more]
RER1_MOUSE2.544e-5455.23Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1[more]
RER1_HUMAN2.544e-5455.81Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1[more]
RER1_CHICK7.402e-5455.23Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1[more]
RER1_CAEEL5.490e-4952.35Protein RER1 homolog OS=Caenorhabditis elegans GN=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA47CH11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA47CH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918054 ID=FC918054; Name=FC918054; organism=Citrus clementina; type=EST; length=925bp
TCAACGTCTCCGACGGCAGCCATCTCGCGGTGGAAATACAATGTTTCGCG
ACGGTACCAGCACTTACTGGACAAGTCGGTCCCACACGTTCTGCACCGTT
GGGTTGTCTGCTTGGCCGTGGTTTCAATCTACGCCGTACGCGTGTACCTT
GTCCAAGGGTTTTACATCATCACGTACGGTCTAGGCATCTACTTGTTGAA
TCTGTTGATGGGATTTCTGTCCCCGCAGATCGACCCCGAGTATAGCGACG
GGCCGACGCTGCCCACCCGCGGATCGGACGAGTTCCGGCCGTTCGTACGC
CGCTTGCCCGAGTTCAAGTTCTGGTACTGTGTCACAAGGTCCTTCTGCAT
TGGTTTTGTGTTGACATTCTTCAGTGCGTTTGATGTGCCTGTCTTTTGGC
CAATACTTCTTTTCTACTGGTTGATGCTATTCACTCTCACTATGAGGAGA
CAGATTATGCACATGATCAAGTATAGATATGTTCCATTCTCTCTTGGGAA
ACAGCGATATGATGGAAAGAGGCCATCTTCATCGGACGCCACGAGCTCTG
AGGACTGAGCCCACTTTAGTTGACAGCAGGAGCTCTTTTAAGGTTTGGTG
GTAGTAAGAATCTTTTTGAGAACAATTATTGTCTCCCAAGATTTTTCTTC
TCATGCTTTTGTATGCTCTGTTAGTAAATTTAGAGTAGCGAATCAAAGTG
GTCACTAATCCCTTCCCCCCCCACCCCATCGTCTTTTTCCCATAACAATC
CTTTTGTATAGGAGGGCCATGCTCCATTCATGTTGCTTAGAAGTTGAGCC
AGTAACTTTATGCCTACTAAGGAAAATGGTGGTCAAGAAGAAGCATTGGA
TTCCATTAAAATTTGGTTTTGAATGTACTTATTTGTTTTGTTCAGCTACA
AATGACATCCTCTCCTTTAAAGGTC
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