FC918057

Overview
NameFC918057
Unique NameFC918057
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length896
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC918057 vs. ExPASy Swiss-Prot
Match: GL8D1_MOUSE (Glycosyltransferase 8 domain-containing protein 1 OS=Mus musculus GN=Glt8d1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11
Identity = 69/299 (23.08%), Postives = 119/299 (39.80%), Query Frame = 3 
Query:   48 MPLRQCLFILWLIALVLGLXXXXXXXXXISQRFKEAPQFYNSPDCPSISSIEFELDEGEEHIFCSDEAVHVAMTLDSAYIRGSMAAILSVLQHSSCPQNIAFHFVTSAKANASLLRATIST-SFPYLKFRVHPFDDSSVSGLISTSIRSALDC-PLNYARSYLANLLPLCVRRXXXXXXXXXXXXXIAKLAATDLGNSSVLAAPEYCNANFT-----------SYFTPTFWSNHALSLTFANRKACYFNTGVMVIDLDRWRAGDYTTKIEEWMELQKRMRIYE---LGSL--PPFFVVF 890
            M  R+   I+W++A+VL L         +S   K      +      +  I+F     +  +    E + V +      + G++AAI SV  H +   N+ F+ VT   + A  LR+ +++ S   +++++  FD   + G +           PL +AR YL  L+P   ++             I  L  T L      A  E C++  T           +Y     +    +         C FN GV V +L  W+  + T ++E+WM+L     +Y     GS+  PP  +VF
Sbjct:    1 MSFRKVNIIIWVLAVVLFLLVLHHNFLSLSSLLKND---ISDSGIVGLQPIDFVASAHQHPVSERQEEIPVVIAASEDRLGGTIAAINSV--HQNTRSNVMFYIVTF-NSTADHLRSWLNSGSLKSIRYKIVNFDTKLLEGKVKQDPDQGESMKPLTFARFYLPILVP-SAKKAIYMDDDVIVQGDILALYNTPLKPGHAAAFSEDCDSASTKVIIRGAGNQYNYIGYLDYKKERIRKLSMKASTCSFNPGVFVANLTEWKRQNVTNQLEKWMKLNVEEGLYSRTLAGSITTPPLLIVF 292
The following BLAST results are available for this feature:
BLAST of FC918057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GL8D1_MOUSE9.685e-1123.08Glycosyltransferase 8 domain-containing protein 1 ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA69AE09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918057 ID=FC918057; Name=FC918057; organism=Citrus clementina; type=EST; length=896bp
AAATTCTTTCAAAATTAAAACCTTCACAATCACACACACTATCAGCTATG
CCTCTTCGTCAATGTTTGTTCATCCTCTGGCTGATCGCTCTCGTTTTGGG
GCTGGCAACCACAGCCAATGCTACCACCACAATCAGTCAACGATTCAAAG
AAGCGCCACAATTCTACAACTCGCCGGACTGCCCCTCCATCAGCAGCATT
GAATTCGAACTAGACGAAGGGGAAGAGCACATTTTTTGTTCGGACGAGGC
AGTCCACGTGGCAATGACCCTGGACAGTGCATACATCCGTGGCTCCATGG
CGGCAATCCTCTCAGTACTCCAACACTCCTCCTGCCCTCAGAACATCGCC
TTCCATTTCGTCACCTCGGCCAAGGCCAACGCGTCACTCCTACGCGCCAC
AATCTCCACCTCCTTCCCTTACCTGAAGTTCCGAGTCCACCCTTTCGACG
ACTCATCAGTGTCGGGTCTCATCTCCACGTCCATCCGGTCGGCCCTCGAC
TGCCCGCTAAACTACGCCCGGAGCTACTTAGCCAACCTCCTGCCTCTCTG
CGTGCGACGTGTCGTCTACCTCGACTCAGATTTAGTGCTAGTGGACGACA
TCGCGAAACTGGCAGCTACTGATCTGGGCAACAGCTCGGTGCTGGCAGCT
CCAGAATACTGCAACGCGAATTTCACATCGTATTTTACGCCAACGTTCTG
GTCAAACCATGCACTGTCACTGACGTTCGCGAACAGGAAGGCGTGCTACT
TCAACACGGGGGTGATGGTGATAGATCTTGATCGATGGAGGGCGGGGGAT
TACACGACCAAGATTGAAGAATGGATGGAGTTGCAGAAGAGGATGAGAAT
ATACGAGCTGGGGTCGTTGCCGCCCTTCTTTGTGGTCTTTGCAGGC
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