FC918060

Overview
NameFC918060
Unique NameFC918060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length791
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918060 vs. ExPASy Swiss-Prot
Match: TCP9_ARATH (Transcription factor TCP9 OS=Arabidopsis thaliana GN=TCP9 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.920e-37
Identity = 75/85 (88.24%), Postives = 82/85 (96.47%), Query Frame = 3
Query:  438 KRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVNGTLKIPTTTTSN 692
            KR+STKDRHTKVEGRGRRIR+PATCAARIFQLTRELGHKSDGET+RWLLE+AE AII ATGTGTVPAIA+SVNGTLKIPTTT ++
Sbjct:   71 KRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMSVNGTLKIPTTTNAD 155          
BLAST of FC918060 vs. ExPASy Swiss-Prot
Match: TCP19_ARATH (Transcription factor TCP19 OS=Arabidopsis thaliana GN=TCP19 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.855e-35
Identity = 71/82 (86.59%), Postives = 78/82 (95.12%), Query Frame = 3
Query:  438 KRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVNGTLKIPTTT 683
            KR ++KDRHTKVEGRGRRIR+PA CAAR+FQLTRELGHKSDGET+RWLLE AE AIIEATGTGTVPAIAVSVNGTLKIPT++
Sbjct:   53 KRPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVSVNGTLKIPTSS 134          
BLAST of FC918060 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSJ (Transcription factor PCF2 OS=Oryza sativa subsp. japonica GN=PCF2 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.615e-30
Identity = 62/80 (77.50%), Postives = 73/80 (91.25%), Query Frame = 3
Query:  453 KDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVNGTLKIPTTTTSN 692
            +DRHTKVEGRGRRIR+PA CAARIFQLTRELGHKSDGET+RWLL+ +E AII ATGTGTVPAIA +V+G L+IPT ++S+
Sbjct:   76 RDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIATTVDGVLRIPTQSSSS 155          
BLAST of FC918060 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSI (Transcription factor PCF2 OS=Oryza sativa subsp. indica GN=PCF2 PE=4 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.615e-30
Identity = 62/80 (77.50%), Postives = 73/80 (91.25%), Query Frame = 3
Query:  453 KDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVNGTLKIPTTTTSN 692
            +DRHTKVEGRGRRIR+PA CAARIFQLTRELGHKSDGET+RWLL+ +E AII ATGTGTVPAIA +V+G L+IPT ++S+
Sbjct:   76 RDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIATTVDGVLRIPTQSSSS 155          
BLAST of FC918060 vs. ExPASy Swiss-Prot
Match: TCP15_ARATH (Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.435e-28
Identity = 60/87 (68.97%), Postives = 72/87 (82.76%), Query Frame = 3
Query:  438 KRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVNGTLKIPTTTTSNVH 698
            KR+STKDRHTKVEGRGRRIR+PA CAAR+FQLTRELGHKSDGET+ WLL+ AE A+I ATGTGT+PA   S+N +L+   ++ S  H
Sbjct:   48 KRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSRSSLSAAH 134          
BLAST of FC918060 vs. ExPASy Swiss-Prot
Match: TCP14_ARATH (Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.586e-27
Identity = 61/101 (60.40%), Postives = 76/101 (75.25%), Query Frame = 3
Query:  438 KRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVNGTLKIPTTTTSNVHH---------PNNV 713
            KR+STKDRHTKV+GRGRRIR+PA CAAR+FQLTRELGHKSDGET+ WLL+ AE ++I ATGTGT+PA   S+N +L+   ++ S   H         PNN+
Sbjct:  113 KRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSSMSLPSHFRSAASTFSPNNI 213          
BLAST of FC918060 vs. ExPASy Swiss-Prot
Match: TCP20_ARATH (Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.873e-27
Identity = 61/92 (66.30%), Postives = 71/92 (77.17%), Query Frame = 3
Query:  423 NNNNNKRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVNGTLKIPTTTTSNVH 698
            N    KRSS KDRHTKVEGRGRRIR+PA CAARIFQLTRELGHKSDGET++WLL+ AE +II ATG+GT+PA A++        +  TSN H
Sbjct:   69 NQLGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALA-------SSAATSNHH 153          
BLAST of FC918060 vs. ExPASy Swiss-Prot
Match: TCP8_ARATH (Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.137e-25
Identity = 55/83 (66.27%), Postives = 69/83 (83.13%), Query Frame = 3
Query:  441 RSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVNGTLKIPTTTTS 689
            + STKDRHTKV+GRGRRIR+PA CAAR+FQLTRELGHKSDGET+ WLL+ AE AI+ ATGTGT+PA   +++ +L+   +T S
Sbjct:   57 KRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSTLSVSLRSSGSTLS 139          
BLAST of FC918060 vs. ExPASy Swiss-Prot
Match: TCP22_ARATH (Transcription factor TCP22 OS=Arabidopsis thaliana GN=TCP22 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.939e-25
Identity = 53/76 (69.74%), Postives = 65/76 (85.53%), Query Frame = 3
Query:  441 RSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVNGTLK 668
            +  TKDRHTKV+GRGRRIR+PA CAAR+FQLTRELGHKSDGET+ WLL+ AE AII +TGTGT+PA   ++N +L+
Sbjct:   60 KKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFSTLNASLR 135          
BLAST of FC918060 vs. ExPASy Swiss-Prot
Match: PCF3_ORYSJ (Transcription factor PCF3 OS=Oryza sativa subsp. japonica GN=PCF3 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.369e-25
Identity = 54/81 (66.67%), Postives = 67/81 (82.72%), Query Frame = 3
Query:  450 TKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVNGTLKIPTTTTSN 692
            TKDRHTKVEGRGRRIR+PA CAAR+FQLTRELGHK+DGET+ WLL+ AE AI+ ATGTGT+PA   S+  +L+   + +S+
Sbjct:  152 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSSLAVSLRSAASHSSS 232          
The following BLAST results are available for this feature:
BLAST of FC918060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TCP9_ARATH4.920e-3788.24Transcription factor TCP9 OS=Arabidopsis thaliana ... [more]
TCP19_ARATH7.855e-3586.59Transcription factor TCP19 OS=Arabidopsis thaliana... [more]
PCF2_ORYSJ2.615e-3077.50Transcription factor PCF2 OS=Oryza sativa subsp. j... [more]
PCF2_ORYSI2.615e-3077.50Transcription factor PCF2 OS=Oryza sativa subsp. i... [more]
TCP15_ARATH1.435e-2868.97Transcription factor TCP15 OS=Arabidopsis thaliana... [more]
TCP14_ARATH1.586e-2760.40Transcription factor TCP14 OS=Arabidopsis thaliana... [more]
TCP20_ARATH7.873e-2766.30Transcription factor TCP20 OS=Arabidopsis thaliana... [more]
TCP8_ARATH1.137e-2566.27Transcription factor TCP8 OS=Arabidopsis thaliana ... [more]
TCP22_ARATH1.939e-2569.74Transcription factor TCP22 OS=Arabidopsis thaliana... [more]
PCF3_ORYSJ7.369e-2566.67Transcription factor PCF3 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA47CH12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA47CH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918060 ID=FC918060; Name=FC918060; organism=Citrus clementina; type=EST; length=791bp
TTTTTTTTTTTTCCTTCGTTTTTGCTCTCAATCTTTCTCTGTGTATACAG
GCAATCCTCCCTTTAGTAAAATTTTTCTGACCCAGAATTTAATTTTCATT
TCTAAGCTCAAGTAGCTATCTCGGTTTTTGTTTTATCTTTAAAATTTTCA
CTACTGATTGTTGTTAAACCTAACAAATGACTTCGTGTCGAGAAACGGAG
CCGGATGATGATGGAGTGGCCTCTGACGTGAGCACAGGAGACGCAGAGGA
AAGCAACAAGACCGTCCATGAAACGACGCCGCTACAAGCCATACCGTTAA
AAGAAGAGCCCGTAGATTCTTACCAGGAACAAAAGCCCGGACTGCCGACG
CCTATCGGAGTAGTCCCGGTGGCCATGCAGATGCAAGTGCCAATGCAAGT
ACCCATGACAACGGTCACAGCAAACAATAACAATAACAAACGGTCATCCA
CCAAAGACCGCCACACGAAAGTGGAAGGCCGAGGCCGTAGGATTCGAATA
CCAGCCACGTGTGCCGCGAGGATCTTTCAACTAACCCGCGAACTCGGCCA
CAAATCAGATGGCGAAACCGTCAGGTGGTTGCTCGAACATGCCGAGCAAG
CCATCATCGAAGCTACCGGCACCGGCACCGTCCCCGCCATCGCCGTCTCC
GTCAACGGAACTCTGAAAATCCCAACAACCACCACCAGTAACGTCCATCA
TCCAAACAACGTAGAAATATCCCCAGAAAAGAAACGTAAGAGATCATCAT
CGGATAATGATGATATTAACAGTAGCAGAGCCGTTACGGTC
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