FC918118

Overview
NameFC918118
Unique NameFC918118
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length835
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918118 vs. ExPASy Swiss-Prot
Match: ACBP2_ARATH (Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=ACBP2 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.911e-48
Identity = 109/218 (50.00%), Postives = 133/218 (61.01%), Query Frame = 2
Query:  164 MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEDNLSITRSNNNNYNEPKRTKDDVVVAAPNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCXXXXXXXXXXXXXXXSTELDE-MXXXXXXXXXXXXXXXXXXXXNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAAS 814
            M DW  L QS+++GL+FSYL+AKLIS+V++FKEDNLS+TR    +  E K    D      + R   +  G   + +S++AEQGS R++                    STELDE                      +DVQ QLY LYKIATEGPC+APQPSALKMTARAKWQAWQKLGAMPPEEAM+KYI+IVT+LYPTW  G      RG +DAAS
Sbjct:    1 MGDWAQLAQSVILGLIFSYLLAKLISIVVTFKEDNLSLTRHPEESQLEIKPEGVD------SRRLDSSCGGFGGEADSLVAEQGSSRSDS---VAGDDSEEDDDWEGVESTELDEAFSAATLFVTTAAADRLSQKVPSDVQQQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIEIVTQLYPTWLDGGVKAGSRGGDDAAS 209          
BLAST of FC918118 vs. ExPASy Swiss-Prot
Match: ACBP1_ARATH (Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=ACBP1 PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 8.911e-48
Identity = 108/216 (50.00%), Postives = 135/216 (62.50%), Query Frame = 2
Query:  164 MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEDNLSITRSNNNNYNEPKRTKDDVVVAAPNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCXXXXXXXXXXXXXXXSTELDE-MXXXXXXXXXXXXXXXXXXXXNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDA 808
            M+DW  L QSI+ GL+F+YL+AKLIS++L+FK++NLS+TR N+   +E +           N R  E  +G   +T+S+IAEQGS+R +E                   STELDE                      N++QLQLY LYKIATEGPC+APQPSALKMTARAKWQAWQKLGAMPPEEAM+KYID+VT+LYP W  G S +  R  E A
Sbjct:    1 MADWYQLAQSIIFGLIFAYLLAKLISILLAFKDENLSLTR-NHTTQSEYE-----------NLRKVETLTGISGETDSLIAEQGSLRGDED-------ESDDDDWEGVESTELDEAFSAATAFVAAAASDRLSQKVSNELQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIDLVTQLYPAWVEGGSKRRNRSGEAA 197          
BLAST of FC918118 vs. ExPASy Swiss-Prot
Match: PECI_MOUSE (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Mus musculus GN=Peci PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.464e-15
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  572 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAA 811
            N+V+L+LYALYK ATEGPC+ P+P  L    +AKW AW  LG++P E A Q Y+D+V+ L  +  A S  + KRG ++ A
Sbjct:   57 NEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDAWNALGSLPKETARQNYVDLVSSLSSSSEAPS--QGKRGADEKA 134          
BLAST of FC918118 vs. ExPASy Swiss-Prot
Match: PECI_HUMAN (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Homo sapiens GN=PECI PE=1 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 7.614e-15
Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 2
Query:  572 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLK 784
            N+V+L+LYALYK ATEGPC+ P+P    +  +AKW AW  LG++P E A Q Y+D+V+ L P+  + S ++
Sbjct:   59 NEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVE 129          
BLAST of FC918118 vs. ExPASy Swiss-Prot
Match: PECI_RAT (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Rattus norvegicus GN=Peci PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.696e-14
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  572 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSK 826
            N+V+L+LYALYK ATEGPC+ P+P       +AKW AW  LG++P E A Q Y+D+V+ L  +  A S  K   G  D  + +SK
Sbjct:   57 NEVKLRLYALYKQATEGPCTMPKPGVFDFVNKAKWDAWNALGSLPKETARQNYVDLVSSLSSSSEASSQGK---GGADGKAQESK 138          
BLAST of FC918118 vs. ExPASy Swiss-Prot
Match: ACBP3_ARATH (Acyl-CoA-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=ACBP3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.537e-12
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 2
Query:  575 DVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYP 757
            + +++L+ L+KIATEG C   QP A+ ++ARAKW AWQKLG M  EEAM++Y+ +V++  P
Sbjct:  254 EAKMELFGLHKIATEGSCREAQPMAVMISARAKWNAWQKLGNMSQEEAMEQYLALVSKEIP 314          
BLAST of FC918118 vs. ExPASy Swiss-Prot
Match: ACBP4_ARATH (Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.029e-11
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 2
Query:  572 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSS 778
            +D  L LYALY+ AT GPC+ P+PSA +   ++KW++WQ LG MP  EAM+ ++ I+ E  P W + +S
Sbjct:   41 DDTALLLYALYQQATVGPCNTPKPSAWRPVEQSKWKSWQGLGTMPSIEAMRLFVKILEEDDPGWYSRAS 109          
BLAST of FC918118 vs. ExPASy Swiss-Prot
Match: ACBP5_ARATH (Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.292e-11
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 2
Query:  572 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTW 763
            ND  L LY L++ AT GPCS P+PSA     ++KW++WQ LG MP  EAM+ ++ I+ E  P W
Sbjct:   42 NDTSLLLYTLHQQATLGPCSIPKPSAWNPVEQSKWKSWQGLGTMPSIEAMRLFVKILEEADPGW 105          
The following BLAST results are available for this feature:
BLAST of FC918118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ACBP2_ARATH8.911e-4850.00Acyl-CoA-binding domain-containing protein 2 OS=Ar... [more]
ACBP1_ARATH8.911e-4850.00Acyl-CoA-binding domain-containing protein 1 OS=Ar... [more]
PECI_MOUSE4.464e-1548.75Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Mus m... [more]
PECI_HUMAN7.614e-1547.89Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Homo ... [more]
PECI_RAT1.696e-1445.88Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Rattu... [more]
ACBP3_ARATH3.537e-1250.82Acyl-CoA-binding domain-containing protein 3 OS=Ar... [more]
ACBP4_ARATH1.029e-1146.38Acyl-CoA-binding domain-containing protein 4 OS=Ar... [more]
ACBP5_ARATH2.292e-1148.44Acyl-CoA-binding domain-containing protein 5 OS=Ar... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA88DG12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918118 ID=FC918118; Name=FC918118; organism=Citrus clementina; type=EST; length=835bp
CGCTCTGTCCCCAACCTTTTCAAGTGTCTCTTTCTTTTCACGATCTCACA
AATCAACCTCGGAAGCATCAATTTGCACCCAAGTTCAAAGGTTTTAGCCT
TGTCTTCCATCCAAAATTTGTCTCATTTTCTAGGGTTAGGGTTTTCTTTC
AGTTACAAAAGCCATGAGTGATTGGCAGCCTCTTCTGCAATCAATACTCA
TAGGCTTACTCTTCTCTTATCTTGTGGCTAAGTTAATCTCTGTGGTCCTT
TCTTTCAAAGAAGATAATCTCTCTATCACTCGCAGTAACAATAACAACTA
CAATGAACCAAAGCGGACTAAAGACGACGTAGTCGTCGCCGCCCCGAATC
CGCGCGGCCCGGAGGCGGATTCGGGTCGGCCTCACGATACGGAGTCGATG
ATCGCGGAGCAAGGAAGCGTGAGGAACGAAGAGAGCTTGCCTTGCAGTGA
TGTTGACAGCGATGGTGACGATGATTGGGAGGGTGTCGAGTCTACGGAAC
TGGATGAGATGTTCAGTGCGGCCACGGCATTTGTGGCGGCCAGTGCTGCT
GCCTCGTCGAAGAAGGTGTCCAATGATGTGCAGTTGCAGCTCTATGCGTT
GTACAAGATTGCCACTGAAGGTCCCTGTAGTGCTCCCCAGCCTTCTGCGT
TGAAAATGACCGCTCGGGCCAAGTGGCAAGCATGGCAGAAATTGGGTGCC
ATGCCTCCAGAAGAAGCAATGCAGAAATACATTGATATTGTTACAGAGCT
GTATCCTACTTGGGCTGCTGGTTCATCTTTGAAGAGCAAACGTGGACAAG
AAGATGCGGCAAGCACAGATTCCAAAGCACCAATG
back to top