FC918128

Overview
NameFC918128
Unique NameFC918128
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length858
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC918128 vs. ExPASy Swiss-Prot
Match: Y4837_ARATH (KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.302e-13
Identity = 55/177 (31.07%), Postives = 85/177 (48.02%), Query Frame = 3 
Query:  360 KRTHFQ-SDAATNGGSKRRNPGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISETVPGCDERIVTIYSS----SEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLIT------VRMLVPADQIGCVIGKGGQVIQNIXTETRAQIRI 857
            KR   Q +++ +N   KRR   D+  +     E  VYR LCP+                +R  TK+ I++ + + GC +R++TIY S     E     +   E +  AQDAL +V+D IVA    +D+E    T +        R+LVP  Q   +IGK G+ I+ I   TRA +++
Sbjct:    6 KRKQIQRNNSESNRNQKRRISHDKINR----DELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVA----SDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKV 174
The following BLAST results are available for this feature:
BLAST of FC918128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4837_ARATH3.302e-1331.07KH domain-containing protein At4g18375 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA38CF04RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918128 ID=FC918128; Name=FC918128; organism=Citrus clementina; type=EST; length=858bp
AATCCAAAGCACAGCAGAGCAAAGCAAAGCAAAGCACACTTGTCCCTTCT
GTCCCTCAAGATATTTTTATTCGCTCGAAACTCTCAAGTCATAAGCTTCA
TGATTAATTCATTTTTTATTATTAGTTTTTTTTTTTGGTCTTAATAATAT
GTTAAACCTACTATTAATTTAATTGACATTTTTGATAACCAAAGAAATAA
AGAAAGAGACACTCTCATTTCCGCGCGACTCGATAAGCCGAACGACACGA
CCCGCCGTTTGGCCCTCCTCTACGTCTAACGTGATTAATACTGGAGTAAT
ATTGTGTGGGAGTAAGTAATTTTGTTGTAATGGCTGGCCAAAGCAATATT
AATTATGGAAAAAGGACTCATTTTCAATCTGATGCTGCTACTAATGGGGG
GAGTAAGAGAAGAAACCCAGGGGATGAAACTGAGCAGCGTGGCATTGGTT
CAGAGGACACCGTTTACCGTTACTTGTGCCCGTTGAGAAAGATTGGTAGT
ATTATTGGTAAAGGTGGTGAGATTGTAAAACAATTGAGGTCTGAAACTAA
GTCGAATATTAGGATTAGTGAGACTGTACCCGGGTGCGATGAGCGAATTG
TTACTATTTATAGTTCCAGTGAGGGAACCAATCTGTTTGAAGATTCTGGA
GAGTTTGTTTCGCCTGCTCAGGATGCTTTGTTCAGGGTCCACGATAGGAT
TGTTGCTGAGGATTCGCTTGCTGATGATGAGTTTGGAGAGCTTACACTTA
TTACTGTGAGGATGCTCGTGCCCGCTGATCAGATTGGATGTGTTATTGGT
AAAGGTGGACAAGTGATTCAGAACATTANGACTGAAACTCGTGCTCAGAT
TCGCATTT
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