FC918129

Overview
NameFC918129
Unique NameFC918129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length794
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918129 vs. ExPASy Swiss-Prot
Match: GLYG_MOUSE (Glycogenin-1 OS=Mus musculus GN=Gyg1 PE=2 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 3.446e-22
Identity = 63/178 (35.39%), Postives = 99/178 (55.62%), Query Frame = 3
Query:  225 TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLL-----ANPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHV 737
            TDQA+VTL   D +  G  VLG S++   + + MVVL S  VSD  +K+L+     V  + +L     A+   ++        TKL  +++T Y K V++DADT+V+ NI+DLF+  +  A  +    +  NSGV V +PS   +N ++   +  GS+ GGDQG LN+Y+S +    +
Sbjct:    2 TDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRMVVLTSPQVSDSMRKVLETVFDDVIMVDVLDSGDSAHLTLMKRPELGITLTKLHCWSLTQYSKCVFMDADTLVLSNIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSIETYNQLLHLASEQGSFDGGDQGLLNTYFSGWATTDI 179          
BLAST of FC918129 vs. ExPASy Swiss-Prot
Match: GLYG_RAT (Glycogenin-1 OS=Rattus norvegicus GN=Gyg1 PE=2 SV=4)

HSP 1 Score: 103.219 bits (256), Expect = 1.710e-21
Identity = 62/178 (34.83%), Postives = 98/178 (55.06%), Query Frame = 3
Query:  225 TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLL-----ANPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHV 737
            TDQA+VTL   D +  G  VLG S++   + +  VVL S  VSD  +K+L+     V  + +L     A+   ++        TKL  +++T Y K V++DADT+V+ NI+DLF+  +  A  +    +  NSGV V +PS   +N ++   +  GS+ GGDQG LN+Y+S +    +
Sbjct:    2 TDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRTVVLASPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPELGITLTKLHCWSLTQYSKCVFMDADTLVLSNIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSIETYNQLLHLASEQGSFDGGDQGLLNTYFSGWATTDI 179          
BLAST of FC918129 vs. ExPASy Swiss-Prot
Match: GLYG_HUMAN (Glycogenin-1 OS=Homo sapiens GN=GYG1 PE=1 SV=4)

HSP 1 Score: 101.679 bits (252), Expect = 4.976e-21
Identity = 60/178 (33.71%), Postives = 98/178 (55.06%), Query Frame = 3
Query:  225 TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLL-----ANPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHV 737
            TDQA+VTL   D +  G  VLG S++   + + +VVL +  VSD  +K+L+     V  + +L     A+   ++        TKL  +++T Y K V++DADT+V+ NI+DLF   +  A  +    +  NSGV V +PS   +N ++   +  GS+ GGDQG LN+++S +    +
Sbjct:    2 TDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDI 179          
BLAST of FC918129 vs. ExPASy Swiss-Prot
Match: GLYG_RABIT (Glycogenin-1 OS=Oryctolagus cuniculus GN=GYG1 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.470e-20
Identity = 58/178 (32.58%), Postives = 98/178 (55.06%), Query Frame = 3
Query:  225 TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLL-----ANPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHV 737
            TDQA+VTL   D +  G  VLG S++   +++ + VL +  VSD  +K L+     V  + +L     A+   ++        TKL  +++T Y K V++DADT+V+ NI+DLF+  +  A  +    +  NSGV V +PS   +N ++   +  GS+ GGDQG LN++++ +    +
Sbjct:    2 TDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDI 179          
BLAST of FC918129 vs. ExPASy Swiss-Prot
Match: GLYG2_HUMAN (Glycogenin-2 OS=Homo sapiens GN=GYG2 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.498e-17
Identity = 59/183 (32.24%), Postives = 98/183 (53.55%), Query Frame = 3
Query:  213 GSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLANPNQV------RPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHV 737
            G   TDQA+VTL   D +  G  VLG+S+R     + +VVL++  VS   + +L      V +++L+ + + +      RP+      TKL  + +T+Y K V+LDADT+V+ N+++LF   +F A  +    +  NSGV V +PS      ++      GS+ G DQG LNS++ ++    +
Sbjct:   31 GMTVTDQAFVTLATNDIYCQGALVLGQSLRRHRLTRKLVVLITPQVSSLLRVILSKVFDEVIEVNLIDSADYIHLAFLKRPE-LGLTLTKLHCWTLTHYSKCVFLDADTLVLSNVDELFDRGEFSAAPDPGWPDCFNSGVFVFQPSLHTHKLLLQHAMEHGSFDGADQGLLNSFFRNWSTTDI 212          
BLAST of FC918129 vs. ExPASy Swiss-Prot
Match: YR707_MIMIV (Uncharacterized protein R707 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R707 PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.645e-14
Identity = 56/187 (29.95%), Postives = 92/187 (49.20%), Query Frame = 3
Query:  234 AYVTLLYGDE-FLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLANPNQV---RPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFK------CRK--------------FCANLKHSERLNSGVMVVEPSAAVFNDM---MTKVNTLGSYTGGDQGFLNSYY 713
            AYVT++YG+  +L G  VLG +++ T +  D V+L +  VS+  +  LK     +  I  +     +      RF  V+TKL   ++T Y K++ LD D I+ KNI+ LFK      C K               C+N K    +N+G+M++EP    + D+   + K N +G +   +Q +L+  Y
Sbjct:    5 AYVTVIYGNNIYLTGALVLGYTLQQTNTKYDRVILATKDVSEEYRSYLKKYYTHIIDIDYVKVNEDIFLEENTRFHDVFTKLSCLSLTQYDKIILLDLDMIIAKNIDHLFKLSAPAACLKRFHIPYGQKIPPKMICSNGKLVGSINAGLMLLEPDKREWEDIKKDIVKENFIGKFKYPEQDYLSLRY 191          
The following BLAST results are available for this feature:
BLAST of FC918129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GLYG_MOUSE3.446e-2235.39Glycogenin-1 OS=Mus musculus GN=Gyg1 PE=2 SV=3[more]
GLYG_RAT1.710e-2134.83Glycogenin-1 OS=Rattus norvegicus GN=Gyg1 PE=2 SV=... [more]
GLYG_HUMAN4.976e-2133.71Glycogenin-1 OS=Homo sapiens GN=GYG1 PE=1 SV=4[more]
GLYG_RABIT2.470e-2032.58Glycogenin-1 OS=Oryctolagus cuniculus GN=GYG1 PE=1... [more]
GLYG2_HUMAN1.498e-1732.24Glycogenin-2 OS=Homo sapiens GN=GYG2 PE=1 SV=2[more]
YR707_MIMIV2.645e-1429.95Uncharacterized protein R707 OS=Acanthamoeba polyp... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA64AD12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918129 ID=FC918129; Name=FC918129; organism=Citrus clementina; type=EST; length=794bp
AGAAAATTCAAAAGCTTCAAATGCTTTTCAACTCTATAAATTGAATTTTT
TAAAAAAATAAATAAAATATATCAATCCCAGTCTCTTGATAATTTCTCGA
GAAACTTTTATTCATTTTCTCGGGAAAATCGTTTTTTAAAATGAAATTGA
TTCCGAAGCTTCTCACTTTCGTGCTCATCGCATTGCTTTCGATTCAATCT
CGAGCTGCAATTGGATCGCAATCGACGGACCAGGCTTACGTCACGCTCTT
GTACGGCGATGAGTTTCTATTGGGAGTTAGGGTTTTGGGCAAATCGATAC
GCGATACTGGATCCAATAAAGACATGGTCGTTTTGGTCTCTGATGGCGTC
TCTGATTACTCCAAAAAGCTTCTCAAGGCAGATGGGTGGATAGTGGAGAA
GATAAGCTTATTGGCAAATCCAAATCAAGTGCGTCCAAAGAGGTTTTGGG
GTGTCTACACCAAGCTGAAGATTTTCAATATGACTAACTATAAGAAAGTT
GTATATCTTGATGCGGACACTATTGTGATCAAGAACATTGAGGATCTTTT
CAAATGTAGAAAATTCTGTGCTAACTTGAAGCATTCGGAGAGGCTAAATT
CAGGAGTCATGGTGGTGGAACCATCAGCTGCAGTCTTCAATGACATGATG
ACCAAAGTGAATACGTTGGGGTCTTACACTGGAGGAGATCAGGGTTTTTT
AAATTCATATTACTCTGACTTTCCCAATGCACACGTTTTTGAGCCAAATT
TACCATTGGAGGTGGTGAATACTAGACCTGTTCCCAATATGGAG
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