FC918137

Overview
NameFC918137
Unique NameFC918137
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length922
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918137 vs. ExPASy Swiss-Prot
Match: UBP25_ARATH (Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana GN=UBP25 PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.520e-67
Identity = 137/210 (65.24%), Postives = 151/210 (71.90%), Query Frame = 3
Query:  279 LAHELQMSWQPSLLSEXXXXXXXXXXXXXXXXSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKXXXXXXXXXXXXXXXXXXXVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKE 908
            +  +LQMSW PSLLS+                +CYLNSVLQCLT+TPPLANFCL  +HSS C     D+ +D ERKR+CPFCI+EKRI RSLSVDLT DAP KI SCL+IFAEHFK GRQEDAHEFLRYVIDACHNT LRLKKLR                     VVKEIFGGALQSQVKCL+CGAESNK DEIMDISL+IL S S+KE
Sbjct:    1 MGFKLQMSWMPSLLSQKRRNGPPLGLRNLGN-TCYLNSVLQCLTFTPPLANFCLTHKHSSHC-----DTYVDGERKRDCPFCIVEKRIARSLSVDLTTDAPNKISSCLKIFAEHFKLGRQEDAHEFLRYVIDACHNTSLRLKKLR----------YNGNEPFNGNSVVKEIFGGALQSQVKCLSCGAESNKADEIMDISLEILQSSSVKE 194          
BLAST of FC918137 vs. ExPASy Swiss-Prot
Match: UBP36_HUMAN (Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 62/177 (35.03%), Postives = 92/177 (51.98%), Query Frame = 3
Query:  375 SCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLR-LKKLRRKXXXXXXXXXXXXXXXXXXXVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSL 902
            +C+LN+ +QCLTYTPPLAN+ L  +H+  C Q +            C  C+++  IV++ +       P      L+  A HF+ G QEDAHEFLRY IDA    CL    KL R+                   +V +IFGG L+S+VKC  C + S+  D  +D++L+I  + ++
Sbjct:  130 TCFLNATIQCLTYTPPLANYLLSKEHARSCHQGSF-----------CMLCVMQNHIVQAFANSGNAIKPVSFIRDLKKIARHFRFGNQEDAHEFLRYTIDAMQKACLNGCAKLDRQ--------------TQATTLVHQIFGGYLRSRVKCSVCKSVSDTYDPYLDVALEIRQAANI 281          
BLAST of FC918137 vs. ExPASy Swiss-Prot
Match: UBP36_MOUSE (Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus musculus GN=Usp36 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.298e-23
Identity = 63/177 (35.59%), Postives = 91/177 (51.41%), Query Frame = 3
Query:  375 SCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLR-LKKLRRKXXXXXXXXXXXXXXXXXXXVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSL 902
            +C+LNS +QCLTYTPPLAN+ L  +H+  C Q              C  C+++  +V++ +       P      L+  A HF+ G QEDAHEFLRY IDA    CL    KL R+                   +V +IFGG L+S+VKC  C + S+  D  +DI+L+I  + ++
Sbjct:  130 TCFLNSTIQCLTYTPPLANYLLSKEHARSCHQ-----------GGFCMLCLMQNHMVQAFANSGNAIKPVSFIRDLKKIARHFRFGNQEDAHEFLRYTIDAMQKACLNGYAKLDRQ--------------TQATTLVHQIFGGYLRSRVKCSVCKSVSDTYDPYLDIALEIRQAANI 281          
BLAST of FC918137 vs. ExPASy Swiss-Prot
Match: UBP42_HUMAN (Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.541e-22
Identity = 63/171 (36.84%), Postives = 88/171 (51.46%), Query Frame = 3
Query:  375 SCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLR-LKKLRRKXXXXXXXXXXXXXXXXXXXVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDI 884
            +C+ N+ LQCLTYTPPLAN+ L  +HS  C             +  C  C ++  I ++LS    +  P  + + +R  A HF+ G QEDAHEFL+Y +DA    CL    KL R                    +V +IFGG L+S+VKCL C   S+  D  +DI+L+I
Sbjct:  119 TCFANAALQCLTYTPPLANYMLSHEHSKTC-----------HAEGFCMMCTMQAHITQALSNPGDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDR--------------HTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPYLDITLEI 264          
BLAST of FC918137 vs. ExPASy Swiss-Prot
Match: UBP16_SCHPO (Probable ubiquitin carboxyl-terminal hydrolase 16 OS=Schizosaccharomyces pombe GN=ubp16 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.174e-21
Identity = 61/177 (34.46%), Postives = 86/177 (48.59%), Query Frame = 3
Query:  375 SCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA----PAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKXXXXXXXXXXXXXXXXXXXVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNS 893
            +C++NSVLQ +T TPPL  + L  QHS  C            R   C  C +E+ + R+     T  A    P+ IQS L++ + HF+  RQEDAHEF+RY++DA   +CL+  K                       VV  IFGG L+ Q+ C  C   SN    ++D+S+D   S
Sbjct:  133 TCFMNSVLQLMTQTPPLVQYLLSGQHSLSC------------RMNACVLCRMEQHVARAYPNKGTKRASAFKPSGIQSMLKVISSHFRPYRQEDAHEFMRYLVDAWQKSCLQNHK-------------NLDHPSRETSVVHRIFGGYLRQQILCSVCKKPSNTYQALLDLSVDAKGS 284          
BLAST of FC918137 vs. ExPASy Swiss-Prot
Match: U17L8_HUMAN (Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 8 OS=Homo sapiens GN=USP17L8 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.174e-21
Identity = 61/178 (34.27%), Postives = 86/178 (48.31%), Query Frame = 3
Query:  375 SCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKXXXXXXXXXXXXXXXXXXXVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKE 908
            +CYLN+ LQCLTYTPPLAN+ L  +HS  C           +R + C  C ++  I         L +P  +    +  A  F  G+QEDAHEFL + +DA    CL   K                       ++ +IFGG  +SQ+KCL C   S+  D  +DI+LDI  + S+K+
Sbjct:   88 TCYLNASLQCLTYTPPLANYMLSREHSQTC-----------QRPKCCMLCTMQAHIT------WALHSPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHK-------------QVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQ 235          
BLAST of FC918137 vs. ExPASy Swiss-Prot
Match: UBP17_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17 OS=Homo sapiens GN=USP17A PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.378e-20
Identity = 60/178 (33.71%), Postives = 86/178 (48.31%), Query Frame = 3
Query:  375 SCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKXXXXXXXXXXXXXXXXXXXVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKE 908
            +CY+N+ LQCLTYTPPLAN+ L  +HS  C            R + C  C ++  I R+      L  P  +    +  A  F  G+QEDAHEFL + +DA    CL   K                       ++ +IFGG  +SQ+KCL C   S+  D  +DI+LDI  + S+++
Sbjct:   88 TCYVNASLQCLTYTPPLANYMLSREHSQTC-----------HRHKGCMLCTMQAHITRA------LHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHK-------------QVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQ 235          
BLAST of FC918137 vs. ExPASy Swiss-Prot
Match: U17L6_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17-like protein 6 OS=Homo sapiens GN=USP17L6 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.378e-20
Identity = 60/178 (33.71%), Postives = 86/178 (48.31%), Query Frame = 3
Query:  375 SCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKXXXXXXXXXXXXXXXXXXXVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKE 908
            +CY+N+ LQCLTYTPPLAN+ L  +HS  C            R + C  C ++  I R+      L  P  +    +  A  F  G+QEDAHEFL + +DA    CL   K                       ++ +IFGG  +SQ+KCL C   S+  D  +DI+LDI  + S+++
Sbjct:   88 TCYVNASLQCLTYTPPLANYMLSREHSQTC-----------HRHKGCMLCTMQAHITRA------LHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHK-------------QVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQ 235          
BLAST of FC918137 vs. ExPASy Swiss-Prot
Match: U17L5_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17-like protein 5 OS=Homo sapiens GN=USP17L5 PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.378e-20
Identity = 60/178 (33.71%), Postives = 86/178 (48.31%), Query Frame = 3
Query:  375 SCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKXXXXXXXXXXXXXXXXXXXVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKE 908
            +CY+N+ LQCLTYTPPLAN+ L  +HS  C            R + C  C ++  I R+      L  P  +    +  A  F  G+QEDAHEFL + +DA    CL   K                       ++ +IFGG  +SQ+KCL C   S+  D  +DI+LDI  + S+++
Sbjct:   88 TCYVNASLQCLTYTPPLANYMLSREHSQTC-----------HRHKGCMLCTMQAHITRA------LHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHK-------------QVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQ 235          
BLAST of FC918137 vs. ExPASy Swiss-Prot
Match: UBPW_MOUSE (Ubiquitin carboxyl-terminal hydrolase DUB-1 OS=Mus musculus GN=Dub1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.057e-20
Identity = 58/178 (32.58%), Postives = 87/178 (48.88%), Query Frame = 3
Query:  375 SCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKXXXXXXXXXXXXXXXXXXXVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKE 908
            SCYLN+ LQCLT+TPPLA++ L  +HS  C    G           C  C +E  + +SL    + D           F +H    +QEDAHEFL + ++  H +CL++ +  +                     + +IFGG  +SQ+KCL C   S+  D  +DI LDI ++ S+K+
Sbjct:   59 SCYLNAALQCLTHTPPLADYMLSQEHSQTCCSPEG-----------CKLCAMEALVTQSLLHSHSGDVMKPSHILTSAFHKH----QQEDAHEFLMFTLETMHESCLQVHRQSKPTSEDSSP-------------IHDIFGGWWRSQIKCLLCQGTSDTYDRFLDIPLDISSAQSVKQ 208          
The following BLAST results are available for this feature:
BLAST of FC918137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
UBP25_ARATH1.520e-6765.24Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabid... [more]
UBP36_HUMAN1.760e-2335.03Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo s... [more]
UBP36_MOUSE2.298e-2335.59Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus mu... [more]
UBP42_HUMAN2.541e-2236.84Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo s... [more]
UBP16_SCHPO8.174e-2134.46Probable ubiquitin carboxyl-terminal hydrolase 16 ... [more]
U17L8_HUMAN8.174e-2134.27Inactive ubiquitin carboxyl-terminal hydrolase 17-... [more]
UBP17_HUMAN2.378e-2033.71Ubiquitin carboxyl-terminal hydrolase 17 OS=Homo s... [more]
U17L6_HUMAN2.378e-2033.71Ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
U17L5_HUMAN2.378e-2033.71Ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
UBPW_MOUSE4.057e-2032.58Ubiquitin carboxyl-terminal hydrolase DUB-1 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA38CF08RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918137 ID=FC918137; Name=FC918137; organism=Citrus clementina; type=EST; length=922bp
CTTTGCTACCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTTTTCACTC
TCTAATGAATTAAAATTTCCCCGATTTCTCTTTTAGAAATAATGAATTAA
ATTCATTATTATTATTATTATTTTTATCAATATTATCAATTTCCTAAAAT
TCAAGTCCAATTCATCTCGAGTTAGTTAGATAGAATTCGAGAGAGCGATG
CGATCTTCTTCATCTTCATCATATTCTTCTCACCGATGAATTTGAAGCGG
CAAGCCTCGGTCGTCTCCGTTGATGGGACTTGCTCACGAATTGCAAATGA
GTTGGCAGCCGAGTCTACTCAGTGAGAAACGCAAACGCGGCGGCCCTCCT
TTAGGCTTACGTAATCTCGGCAACTCTTGTTATCTCAACAGCGTCCTTCA
GTGCCTCACCTACACTCCTCCCCTCGCCAATTTCTGCCTCAAGCTCCAAC
ACTCCTCTCTCTGCAAACAGCTTACAGGTGATTCGGCTTTGGACGCGGAG
AGAAAGCGCGAGTGTCCGTTTTGTATCCTGGAGAAGAGAATTGTGCGGTC
GCTGAGCGTGGACCTCACGCTCGATGCGCCGGCGAAGATCCAGAGCTGTT
TGAGGATTTTCGCCGAGCATTTTAAGTGCGGACGTCAAGAGGACGCGCAC
GAGTTCTTGCGGTACGTGATTGATGCTTGCCACAACACGTGTTTGCGGCT
CAAGAAGCTGAGGAGGAAAGGAGGCGGCAGCAGCGGCGGCGGCGGAGGTG
GAGAGACCATTAATGGTGGTAGTTCTGTAGTTAAGGAGATCTTTGGAGGT
GCGTTGCAGAGTCAGGTTAAGTGTTTGGCTTGTGGTGCTGAGTCGAATAA
GGTTGATGAGATTATGGATATTAGTCTTGATATTTTGAATAGTTGTTCGC
TTAAAGAGCTATGCAAAAGTTT
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