FC918194

Overview
NameFC918194
Unique NameFC918194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918194 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.348e-41
Identity = 97/240 (40.42%), Postives = 147/240 (61.25%), Query Frame = 3
Query:  177 YQPII-----ESEATDASC-RLENVLSDTNLSCFKR--LQIASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLLAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATXXXXXXXXXXXXYKFGAGLIGASLVLKLSWYIIV 872
            Y+P++     +S+ T+ S   +E  L     +   R  L++A W E KLL  L+  ++ V ++N ++S  T +F GHLG+L+LA AS+   GIQ LAYG+MLGM SAV+T+CGQAYGA +Y  +G+  QRA  + LA  V +  +Y +  P+L  +G+S A+A    +F  G+IPQI+A+A+  P+Q+FLQAQ+IV P AY+S                    GL+GA+L+L  SW+++V
Sbjct:    7 YEPLLTRLHSDSQITERSSPEIEEFLRRRGSTVTPRWWLKLAVW-ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLV 245          
BLAST of FC918194 vs. ExPASy Swiss-Prot
Match: YJ2D_SCHPO (Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe GN=SPCC4B3.13 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.886e-21
Identity = 69/248 (27.82%), Postives = 119/248 (47.98%), Query Frame = 3
Query:  120 TEAQRHRGTAMESPVEAAQYQPIIESEATDASCRLENVLSDTNLSCFKRLQIASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLLAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATXXXXXXXXXXXXYK--FGAGLIGASLVLKLS 857
            T + R     ++ P     Y  + E+E  ++     +V  D N   +       W EL LL++ A P V   L+     ++T    GHLG  ELAAASL N    + A+ +  G+ SA++T+  Q++G+G YEM+G+++QR   +LL    P+ +++   + +L+ L +       AA ++  ++    AYA+   +++FLQ Q I  P  YI A              +    G G +GA + + L+
Sbjct:   47 TTSLRKPTPRVQRPATDVSYGALEETEENESIASGLSVQEDFNSKAW-------WKELTLLIKFATPVVLTSLLQYGEVVTTVFSLGHLGKTELAAASLSNMTATITAFAIYQGIVSALDTVGTQSFGSGNYEMVGLHLQRILAILLLIQFPIFLIWWKIEGILLFLRQDPLTCMFAAKYMRVMMLASPAYALFEALKRFLQVQGIFHPVTYILAIVVPINIFLNYLFVWSPWVGFGFLGAPVAVALT 287          
BLAST of FC918194 vs. ExPASy Swiss-Prot
Match: S47A1_HUMAN (Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.227e-18
Identity = 61/194 (31.44%), Postives = 96/194 (49.48%), Query Frame = 3
Query:  288 ELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLLAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATXXXXXXXXXXXXYKFGAGLIGASLVLKLSWYII 869
            EL+ L+ LA PA  V L+  L+S  + VFCGHLG LEL A +L  + I +    +  G+ SA +TL  Q YG+   + +GV +QR+  VLL    P   +++  + +L+L  +   V+     +V   IP + A  +     K+L  Q IVLP      A             ++   G+IG++L   +S Y +
Sbjct:   34 ELRALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALVLLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGVIGSALANLISQYTL 227          
BLAST of FC918194 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.603e-18
Identity = 56/185 (30.27%), Postives = 95/185 (51.35%), Query Frame = 3
Query:  288 ELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLLAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQ-KFLQAQSIVLPSAYISAATXXXXXXXXXXXXYKFGAGLIGAS 839
            E   LV LA P     L+  L+S+ + +FCGHLG +EL A +L  S + +    +  G+ SA +TL  Q++G    + +GV +QR   +LL    P   +++  + +L+LL +   VA  A ++V   IP + A A  F +Q ++LQ+Q I++P   +  A             Y    G++G++
Sbjct:   43 EAAALVALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPA-AFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAFLLYALDLGVVGSA 226          
BLAST of FC918194 vs. ExPASy Swiss-Prot
Match: YAO6_SCHPO (Uncharacterized transporter C11D3.06 OS=Schizosaccharomyces pombe GN=SPAC11D3.06 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 58/193 (30.05%), Postives = 96/193 (49.74%), Query Frame = 3
Query:  288 ELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLLAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATXXXXXXXXXXXXYKFGAGLIGASLVLKLSWYI 866
            E+K L+  +AP +  Y + N +  S+ +  G LG  EL+ A+          + + LG  +A +TL    +GAG+ + LG+ +Q    VL    +P+ +V+ + KP+LI L ++  +A A+  F+  LIP    Y     ++KFLQ Q I    +YI   T            + +G GL GA L   LS+++
Sbjct:    7 EVKYLLINSAPVILGYALQNSLQTSSVIVTGRLGPSELSVAAFAYMFAMSTGWLIALGGTTAFDTLGSNLWGAGKKQELGILLQTGFIVLSILYLPICLVWWYSKPILIFLHQTPELAEASQKFLRYLIPGGLGYVCFELLKKFLQTQEITRAGSYILLVTSPLNVALNFLLVHYYGLGLKGAPLATGLSYWL 199          
BLAST of FC918194 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.734e-18
Identity = 55/200 (27.50%), Postives = 96/200 (48.00%), Query Frame = 3
Query:  267 LQIASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLLAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATXXXXXXXXXXXXYKFGAGLIGASLVLKLSWYI 866
            L +  W E + L+ LAAPA    L+  L+S+ + +FCGHLG +EL A SL  + I +    +  G+  A +TL  Q +G    +++G+ +QR   +LL    P   + I  + +L+L  +   V+    ++V   +P + A  +   + K+LQ Q I+ P                    Y  G G++G++    +S +I
Sbjct:   41 LPMEVWQEAQQLLALAAPAFLSQLMIFLISIVSSIFCGHLGKVELDAVSLAITIINITGVAVGTGLAGACDTLISQTFGGSNLKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQLLAKYLQNQGIIYPQVLTGFIANIFNALFNYILLYVLGLGVMGSACANTVSQFI 240          
BLAST of FC918194 vs. ExPASy Swiss-Prot
Match: S47A1_PONAB (Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.734e-18
Identity = 60/194 (30.93%), Postives = 95/194 (48.97%), Query Frame = 3
Query:  288 ELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLLAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATXXXXXXXXXXXXYKFGAGLIGASLVLKLSWYII 869
            EL+ L+ LA PA  V L+  L+S  + VFCGHLG LEL A +L  + I +    +  G+ SA +TL  Q YG+   + +GV +QR+  +LL    P   +++  + +L+L  +   V+     +V   IP + A  +     K+L  Q IVLP      A             ++   G IG++L   +S Y +
Sbjct:   34 ELRALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALILLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGAIGSALANLISQYTL 227          
BLAST of FC918194 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.664e-18
Identity = 60/194 (30.93%), Postives = 94/194 (48.45%), Query Frame = 3
Query:  288 ELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLLAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATXXXXXXXXXXXXYKFGAGLIGASLVLKLSWYII 869
            EL+ L+ LA PA    L+  L+S  + VFCGHLG LEL A +L  + I +    +  G+ SA +TL  Q YG+   + +GV +QR T +LL    P   ++I  + +L+L  +   V+     +V   IP + A  +     K+L  Q IVLP      A             Y    G++G++L   +S + +
Sbjct:   34 ELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMIFIPALPAAFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYVFLYHLHLGVMGSALANTISQFAL 227          
BLAST of FC918194 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18
Identity = 59/194 (30.41%), Postives = 95/194 (48.97%), Query Frame = 3
Query:  288 ELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLLAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATXXXXXXXXXXXXYKFGAGLIGASLVLKLSWYII 869
            EL+ L+ LA PA    L+  L+S  + VFCGHLG LEL A +L  + I +    +  G+ SA +TL  Q YG+   + +GV +QR T +LL    P   ++I  + +L+L  +   V+     +V   IP + A  +     K+L  Q IVLP      A             ++   G++G++L   +S + +
Sbjct:   33 ELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMVFIPALPAAFLYTLQVKYLLNQGIVLPQVITGIAANLVNALANYLFLHQLHLGVMGSALANTISQFAL 226          
BLAST of FC918194 vs. ExPASy Swiss-Prot
Match: S47A1_RABIT (Multidrug and toxin extrusion protein 1 OS=Oryctolagus cuniculus GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18
Identity = 57/185 (30.81%), Postives = 93/185 (50.27%), Query Frame = 3
Query:  288 ELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLLAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATXXXXXXXXXXXXYKFGAGLIGASL 842
            EL+ L+ LA PA    L+  L+S  + VFCGHL  LEL A +L  + I ++   +  G+ SA +TL  Q YG+   + +GV +QR + +LL   +P   +++  + +L+L  +  AV+     +V   IP + A  +     K+L  Q IVLP      A             Y+   G++G++L
Sbjct:   33 ELRALLVLACPAFLAQLMVFLISFVSSVFCGHLSKLELNAVTLAIAVINVMGVSVGFGLSSACDTLISQTYGSRNLKHVGVILQRGSLILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQTYVTIFIPALPATFLYTLQVKYLLNQGIVLPQVVTGVAANLVNALANYLFVYQLHLGVMGSAL 217          
The following BLAST results are available for this feature:
BLAST of FC918194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TT12_ARATH1.348e-4140.42Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
YJ2D_SCHPO5.886e-2127.82Uncharacterized transporter C4B3.13 OS=Schizosacch... [more]
S47A1_HUMAN1.227e-1831.44Multidrug and toxin extrusion protein 1 OS=Homo sa... [more]
S47A2_MOUSE1.603e-1830.27Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
YAO6_SCHPO2.094e-1830.05Uncharacterized transporter C11D3.06 OS=Schizosacc... [more]
S47A1_XENTR2.734e-1827.50Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A1_PONAB2.734e-1830.93Multidrug and toxin extrusion protein 1 OS=Pongo a... [more]
S47A1_MOUSE4.664e-1830.93Multidrug and toxin extrusion protein 1 OS=Mus mus... [more]
S47A1_RAT6.091e-1830.41Multidrug and toxin extrusion protein 1 OS=Rattus ... [more]
S47A1_RABIT6.091e-1830.81Multidrug and toxin extrusion protein 1 OS=Oryctol... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA79DE12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA79DE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918194 ID=FC918194; Name=FC918194; organism=Citrus clementina; type=EST; length=882bp
TTTGGAAGCATCCTCTGTCTGTGTGTGTAGCTAAATATTGCTGAACAGTA
TAAAAATAATCCTCTTCATCCTACAAGGCTATAACCAATCCAAAGTTAAT
AATCTTCATCATCACACGCACAGAGGCACAGAGGCACAGAGGCACAGCGA
TGGAGTCTCCAGTAGAAGCAGCCCAATACCAACCAATTATAGAATCCGAA
GCTACAGATGCAAGCTGTAGACTTGAAAATGTGTTGTCCGACACCAACTT
GTCGTGTTTCAAGCGGCTGCAGATTGCCTCTTGGCTCGAACTGAAGCTCC
TCGTCCGTCTTGCTGCACCAGCCGTCTTTGTTTACCTCATCAACAACCTC
ATGTCACTCTCAACTCGCGTCTTCTGCGGCCATCTCGGCAACCTCGAGCT
CGCTGCCGCATCTCTTGGCAACAGCGGCATCCAACTCTTAGCCTACGGCC
TCATGCTCGGCATGGGGAGTGCAGTTGAGACGCTATGTGGCCAGGCCTAT
GGCGCCGGCAGATACGAGATGCTAGGCGTATACATGCAAAGAGCAACGTT
TGTTCTACTGGCTACAGGGGTGCCAGTGATGATGGTTTACATTTTTTGTA
AGCCAATGTTGATCTTACTTGGTGAATCAACGGCTGTGGCGTCCGCGGCT
GCACTGTTTGTTTACGGCCTGATCCCACAAATCTTTGCTTACGCTGTGAA
CTTCCCAATACAAAAGTTCCTCCAAGCACAGAGCATTGTGCTTCCGAGTG
CTTACATATCAGCTGCTACTCTTGTGTTGCACCTCTTGCTAAGCTGGCTG
GTGGTTTACAAATTTGGTGCGGGGTTGATTGGTGCATCCTTGGTGCTAAA
GTTGTCGTGGTATATTATAGTTGGGGCCCAGT
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