FC918196

Overview
NameFC918196
Unique NameFC918196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length353
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: XRCC3_ARATH (DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.856e-39
Identity = 78/120 (65.00%), Postives = 90/120 (75.00%), Query Frame = 3
Query:   15 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSN-------DHNPCDYVFVQSVYSVDQL 353
            P+NLL    T  K T GC I+D CL GGI C+S+TE+VAESG GKTQ CLQL+L  QLP SHGGL+ SSLYLH+EFPFP RRLHQLSHTF  SN       + NPCD+VFVQ+V+SVD L
Sbjct:    8 PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPISHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127          
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: XRCC3_BOVIN (DNA repair protein XRCC3 OS=Bos taurus GN=XRCC3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.077e-17
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 3
Query:   36 PLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQL 272
            P   ++ ++GCP++D  L GG+P + ITEL   S +GKTQ  LQL L+ QLP  HGGL A ++Y+ TE  FP RRL QL
Sbjct:   76 PEQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQLPPRHGGLGAGAVYVCTEDAFPSRRLQQL 154          
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: XRCC3_HUMAN (DNA repair protein XRCC3 OS=Homo sapiens GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.059e-16
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 3
Query:   36 PLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQL 272
            P   ++ ++GCP++D  L GG+P + ITEL   S +GKTQ  LQL L+ Q P  HGGL A ++Y+ TE  FP +RL QL
Sbjct:   76 PTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQL 154          
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: XRCC3_MOUSE (DNA repair protein XRCC3 OS=Mus musculus GN=Xrcc3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.973e-15
Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 3
Query:   36 PLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNP---------CDYVFVQSVYSVDQL 353
            P   ++ ++GCP++D+ LGGG+P   IT L   S +GKTQ  LQL L+ Q P  +GGL A ++Y+ TE  FP +RL QL    R      P          +++F++    VD L
Sbjct:   76 PEQHQRLSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLALQLCLAVQFPRQYGGLEAGAVYICTEDAFPSKRLWQLIAQQRRLRTDAPEELIEKIRFSNHIFIEHAADVDTL 190          
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: RADA_SULTO (DNA repair and recombination protein radA OS=Sulfolobus tokodaii GN=radA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 3
Query:   39 LTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYVFVQSVYSVDQL 353
            + T+K T G   +D  LGGGI   ++TEL  E GSGKTQ C QL+++ QLP   GGL   ++Y+ TE  F   R+  +S       D    +  +++++ S  Q+
Sbjct:   84 INTKKITTGSQALDGLLGGGIETRTMTELFGEFGSGKTQLCHQLSVNVQLPLEKGGLGGKAVYIDTEGTFRWERIEAMSKAIGLEPDSAMNNIYYMRAINSDHQM 188          
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: RADA_AERPE (DNA repair and recombination protein radA OS=Aeropyrum pernix GN=radA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13
Identity = 40/114 (35.09%), Postives = 61/114 (53.51%), Query Frame = 3
Query:   12 TPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYVFVQSVYSVDQL 353
            T  +L    +  +K T G   +D  LGGGI   +ITEL  E GSGKTQ C QL+++ QLP   GGL   ++Y+ TE  F   R+ Q++       D    +  +++++ S  Q+
Sbjct:   72 TAYDLKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYVDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQI 185          
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: RADA_PYRCJ (DNA repair and recombination protein radA OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=radA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.747e-13
Identity = 38/99 (38.38%), Postives = 54/99 (54.55%), Query Frame = 3
Query:   51 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYVFVQSVYSVD 347
            + + G   +D  LGGGI   ++TE+V E GSGKTQ C QL +  QLP   GGL A ++Y+ TE  F   R+ Q++   R  +     + +F    YS D
Sbjct:  100 RISTGVRALDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEDRGGLGAKAIYIDTENTFRPERIMQIAKA-RGLDPDQALNNIFYARAYSAD 197          
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: RADA_THENV (DNA repair and recombination protein radA OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=radA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.200e-13
Identity = 38/102 (37.25%), Postives = 54/102 (52.94%), Query Frame = 3
Query:   42 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYVFVQSVYSVD 347
            T  + + G   +D  LGGGI   ++TE+  E GSGKTQ C QL +  QLP   GGL A ++Y+ TE  F   R+ Q++   R  +     + +F    YS D
Sbjct:   95 TIRRISTGVKALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKA-RGLDPDQALNNIFYARAYSSD 195          
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: RADA_PYRAR (DNA repair and recombination protein radA OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=radA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.097e-13
Identity = 38/99 (38.38%), Postives = 54/99 (54.55%), Query Frame = 3
Query:   51 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYVFVQSVYSVD 347
            + + G   +D  LGGGI   ++TE+V E GSGKTQ C QL +  QLP   GGL A ++Y+ TE  F   R+ Q++   R  +     + +F    YS D
Sbjct:  101 RISTGVRSLDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQMARA-RGLDPDQALNNIFYARAYSSD 198          
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: RADA_PYRAE (DNA repair and recombination protein radA OS=Pyrobaculum aerophilum GN=radA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.057e-12
Identity = 38/99 (38.38%), Postives = 53/99 (53.54%), Query Frame = 3
Query:   51 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYVFVQSVYSVD 347
            + + G   +D  LGGGI   ++TE+V E GSGKTQ C QL +  QLP   GGL A ++Y+ TE  F   R+ Q++   R  +       +F    YS D
Sbjct:  101 RISTGVRSLDELLGGGIETRAVTEIVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKA-RGLDSDQALHNIFYARAYSSD 198          
The following BLAST results are available for this feature:
BLAST of FC918196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
XRCC3_ARATH3.856e-3965.00DNA repair protein XRCC3 homolog OS=Arabidopsis th... [more]
XRCC3_BOVIN7.077e-1750.63DNA repair protein XRCC3 OS=Bos taurus GN=XRCC3 PE... [more]
XRCC3_HUMAN2.059e-1648.10DNA repair protein XRCC3 OS=Homo sapiens GN=XRCC3 ... [more]
XRCC3_MOUSE2.973e-1537.39DNA repair protein XRCC3 OS=Mus musculus GN=Xrcc3 ... [more]
RADA_SULTO3.635e-1336.19DNA repair and recombination protein radA OS=Sulfo... [more]
RADA_AERPE3.635e-1335.09DNA repair and recombination protein radA OS=Aerop... [more]
RADA_PYRCJ4.747e-1338.38DNA repair and recombination protein radA OS=Pyrob... [more]
RADA_THENV6.200e-1337.25DNA repair and recombination protein radA OS=Therm... [more]
RADA_PYRAR8.097e-1338.38DNA repair and recombination protein radA OS=Pyrob... [more]
RADA_PYRAE1.057e-1238.38DNA repair and recombination protein radA OS=Pyrob... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA1DD03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA1DD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918196 ID=FC918196; Name=FC918196; organism=Citrus clementina; type=EST; length=353bp
CTACACCTATGACACCACAAAATTTGCTCGACAACCCATTAACGACCGAA
AAGTGCACCGTGGGCTGCCCCATAATCGACCGTTGCCTTGGTGGCGGCAT
TCCCTGCAACTCGATAACGGAGCTGGTAGCCGAAAGCGGCTCCGGCAAGA
CCCAGTTCTGCCTCCAACTCACCCTCTCCGCCCAACTCCCCAGCTCCCAT
GGCGGCCTCTCCGCCTCTTCTCTCTATCTTCATACAGAATTCCCCTTTCC
CATGCGCCGCCTCCACCAACTCAGCCACACATTTCGGCCCTCCAACGACC
ATAACCCATGCGATTACGTATTTGTTCAGAGCGTCTATTCCGTGGACCAA
CTG
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