FC918196
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: XRCC3_ARATH (DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana GN=XRCC3 PE=1 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 3.856e-39 Identity = 78/120 (65.00%), Postives = 90/120 (75.00%), Query Frame = 3 Query: 15 PQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSN-------DHNPCDYVFVQSVYSVDQL 353 P+NLL T K T GC I+D CL GGI C+S+TE+VAESG GKTQ CLQL+L QLP SHGGL+ SSLYLH+EFPFP RRLHQLSHTF SN + NPCD+VFVQ+V+SVD L Sbjct: 8 PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPISHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: XRCC3_BOVIN (DNA repair protein XRCC3 OS=Bos taurus GN=XRCC3 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 7.077e-17 Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 3 Query: 36 PLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQL 272 P ++ ++GCP++D L GG+P + ITEL S +GKTQ LQL L+ QLP HGGL A ++Y+ TE FP RRL QL Sbjct: 76 PEQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQLPPRHGGLGAGAVYVCTEDAFPSRRLQQL 154
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: XRCC3_HUMAN (DNA repair protein XRCC3 OS=Homo sapiens GN=XRCC3 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.059e-16 Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 3 Query: 36 PLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQL 272 P ++ ++GCP++D L GG+P + ITEL S +GKTQ LQL L+ Q P HGGL A ++Y+ TE FP +RL QL Sbjct: 76 PTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQL 154
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: XRCC3_MOUSE (DNA repair protein XRCC3 OS=Mus musculus GN=Xrcc3 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.973e-15 Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 3 Query: 36 PLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNP---------CDYVFVQSVYSVDQL 353 P ++ ++GCP++D+ LGGG+P IT L S +GKTQ LQL L+ Q P +GGL A ++Y+ TE FP +RL QL R P +++F++ VD L Sbjct: 76 PEQHQRLSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLALQLCLAVQFPRQYGGLEAGAVYICTEDAFPSKRLWQLIAQQRRLRTDAPEELIEKIRFSNHIFIEHAADVDTL 190
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: RADA_SULTO (DNA repair and recombination protein radA OS=Sulfolobus tokodaii GN=radA PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13 Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 3 Query: 39 LTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYVFVQSVYSVDQL 353 + T+K T G +D LGGGI ++TEL E GSGKTQ C QL+++ QLP GGL ++Y+ TE F R+ +S D + +++++ S Q+ Sbjct: 84 INTKKITTGSQALDGLLGGGIETRTMTELFGEFGSGKTQLCHQLSVNVQLPLEKGGLGGKAVYIDTEGTFRWERIEAMSKAIGLEPDSAMNNIYYMRAINSDHQM 188
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: RADA_AERPE (DNA repair and recombination protein radA OS=Aeropyrum pernix GN=radA PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13 Identity = 40/114 (35.09%), Postives = 61/114 (53.51%), Query Frame = 3 Query: 12 TPQNLLDNPLTTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYVFVQSVYSVDQL 353 T +L + +K T G +D LGGGI +ITEL E GSGKTQ C QL+++ QLP GGL ++Y+ TE F R+ Q++ D + +++++ S Q+ Sbjct: 72 TAYDLKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYVDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQI 185
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: RADA_PYRCJ (DNA repair and recombination protein radA OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=radA PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.747e-13 Identity = 38/99 (38.38%), Postives = 54/99 (54.55%), Query Frame = 3 Query: 51 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYVFVQSVYSVD 347 + + G +D LGGGI ++TE+V E GSGKTQ C QL + QLP GGL A ++Y+ TE F R+ Q++ R + + +F YS D Sbjct: 100 RISTGVRALDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEDRGGLGAKAIYIDTENTFRPERIMQIAKA-RGLDPDQALNNIFYARAYSAD 197
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: RADA_THENV (DNA repair and recombination protein radA OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=radA PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.200e-13 Identity = 38/102 (37.25%), Postives = 54/102 (52.94%), Query Frame = 3 Query: 42 TTEKCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYVFVQSVYSVD 347 T + + G +D LGGGI ++TE+ E GSGKTQ C QL + QLP GGL A ++Y+ TE F R+ Q++ R + + +F YS D Sbjct: 95 TIRRISTGVKALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKA-RGLDPDQALNNIFYARAYSSD 195
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: RADA_PYRAR (DNA repair and recombination protein radA OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=radA PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.097e-13 Identity = 38/99 (38.38%), Postives = 54/99 (54.55%), Query Frame = 3 Query: 51 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYVFVQSVYSVD 347 + + G +D LGGGI ++TE+V E GSGKTQ C QL + QLP GGL A ++Y+ TE F R+ Q++ R + + +F YS D Sbjct: 101 RISTGVRSLDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQMARA-RGLDPDQALNNIFYARAYSSD 198
BLAST of FC918196 vs. ExPASy Swiss-Prot
Match: RADA_PYRAE (DNA repair and recombination protein radA OS=Pyrobaculum aerophilum GN=radA PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.057e-12 Identity = 38/99 (38.38%), Postives = 53/99 (53.54%), Query Frame = 3 Query: 51 KCTVGCPIIDRCLGGGIPCNSITELVAESGSGKTQFCLQLTLSAQLPSSHGGLSASSLYLHTEFPFPMRRLHQLSHTFRPSNDHNPCDYVFVQSVYSVD 347 + + G +D LGGGI ++TE+V E GSGKTQ C QL + QLP GGL A ++Y+ TE F R+ Q++ R + +F YS D Sbjct: 101 RISTGVRSLDELLGGGIETRAVTEIVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKA-RGLDSDQALHNIFYARAYSSD 198 The following BLAST results are available for this feature:
BLAST of FC918196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC918196 ID=FC918196; Name=FC918196; organism=Citrus clementina; type=EST; length=353bpback to top |