FC918197

Overview
NameFC918197
Unique NameFC918197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length848
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918197 vs. ExPASy Swiss-Prot
Match: BH063_ARATH (Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.552e-23
Identity = 74/141 (52.48%), Postives = 87/141 (61.70%), Query Frame = 2
Query:  446 VGRESFKKRKADKVQNTKVAVEENTKDKRMKGS----AEEGDS--SKITEQXXXXXXXXXXXXXXXXXXXXXXXXXETSADTSKAS-EVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAG 847
            +G  +FKKRK D    TK   + N K K+M  +     EEG+   SKITEQ                           S D+SK + E++K DYIHVRARRGQATDSHS+AERVRREKISERMK+LQDLVPGC+KITGKAG
Sbjct:   86 LGTGNFKKRKFDT--ETK---DCNEKKKKMTMNRDDLVEEGEEEKSKITEQNNGSTKSIKKMKHKAKKEENNF-----SNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAG 216          
BLAST of FC918197 vs. ExPASy Swiss-Prot
Match: BH064_ARATH (Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 1.006e-22
Identity = 77/174 (44.25%), Postives = 95/174 (54.60%), Query Frame = 2
Query:  341 AISRTSSS--PPAVVPEAVDVKGKVS--VAALNEKVSAAVGRESFKKRKADKVQNTKVAVEENTKDKRMKGSAEEGDSSKITEQXXXXXXXXXXXXXXXXXXXXXXXXXETSADTSK-ASEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAG 847
            +ISRTSS    P    E +   G+ +  VA  N++      RE  K  K       K+ VE  T+   MKG +  G++   ++                           TS +TSK ASE QK DYIHVRARRGQATD HSLAER RREKIS++MKYLQD+VPGCNK+TGKAG
Sbjct:   91 SISRTSSCHMEPVDTMEVLLKTGEETRAVALKNKRKPEVKTREEQKTEK-------KIKVEAETESS-MKGKSNMGNTEASSD---------------------------TSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAG 229          
BLAST of FC918197 vs. ExPASy Swiss-Prot
Match: BEE2_ARATH (Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 47/61 (77.05%), Postives = 56/61 (91.80%), Query Frame = 2
Query:  665 ADTSKASEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAG 847
            ++T  +SE+QKPDYIHVRARRG+ATD HSLAER RREKIS++MK LQD+VPGCNK+TGKAG
Sbjct:  125 SNTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAG 185          
BLAST of FC918197 vs. ExPASy Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.740e-20
Identity = 66/138 (47.83%), Postives = 73/138 (52.90%), Query Frame = 2
Query:  455 ESFKKRKADKVQNTKVAV--------EENTKDKRMKGSAEEGDSSKITEQXXXXXXXXXXXXXXXXXXXXXXXXXETSADTSKASEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKA 844
            E  +KRK    QN+  AV        +E++  KR K S E GD +K                               S D  K       DYIHVRARRGQATDSHSLAERVRREKISERMK LQDLVPGCNK+TGKA
Sbjct:  202 ELSRKRKTKSKQNSPSAVSSSKEIEEKEDSDPKRCKKSEENGDKTK-------------------------------SIDPYK-------DYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKA 301          
BLAST of FC918197 vs. ExPASy Swiss-Prot
Match: BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.776e-19
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 2
Query:  677 KASEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKA 844
            ++S+  K  YIHVRARRGQAT+SHSLAERVRREKISERMK+LQDLVPGCNK+TGKA
Sbjct:  291 QSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKA 346          
BLAST of FC918197 vs. ExPASy Swiss-Prot
Match: BH078_ARATH (Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = 2
Query:  656 ETSADTSKASEVQKP----DYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKA 844
            E   + +K++  + P    DYIHVRARRGQATDSHSLAERVRREKI ERMK LQDLVPGCNK+TGKA
Sbjct:  278 EGEGEGNKSNNTKPPEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKA 344          
BLAST of FC918197 vs. ExPASy Swiss-Prot
Match: BH074_ARATH (Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 45/59 (76.27%), Postives = 54/59 (91.53%), Query Frame = 2
Query:  668 DTSKASEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKA 844
            ++S++ E  K +YIH+RARRGQAT+SHSLAERVRREKISERM+ LQ+LVPGCNKITGKA
Sbjct:  191 ESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKA 249          
BLAST of FC918197 vs. ExPASy Swiss-Prot
Match: BH077_ARATH (Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.151e-18
Identity = 48/59 (81.36%), Postives = 50/59 (84.75%), Query Frame = 2
Query:  668 DTSKASEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKA 844
            D +K  E  K DYIHVRARRGQATDSHSLAER RREKISERM  LQDLVPGCN+ITGKA
Sbjct:  177 DDAKPPEAPK-DYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKA 234          
BLAST of FC918197 vs. ExPASy Swiss-Prot
Match: BPE_ARATH (Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18
Identity = 46/62 (74.19%), Postives = 48/62 (77.42%), Query Frame = 2
Query:  659 TSADTSKASEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKA 844
            T  +  K       DYIHVRARRGQATDSHSLAER RREKISERMK LQDLVPGCNK+ GKA
Sbjct:  118 TETEQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKA 179          
BLAST of FC918197 vs. ExPASy Swiss-Prot
Match: BH076_ARATH (Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.349e-18
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 2
Query:  683 SEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKA 844
            S+  K  YIH+RARRGQAT+SHSLAERVRREKISERMK+LQDLVPGC+K+TGKA
Sbjct:  213 SDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKA 266          
The following BLAST results are available for this feature:
BLAST of FC918197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
BH063_ARATH1.552e-2352.48Transcription factor bHLH63 OS=Arabidopsis thalian... [more]
BH064_ARATH1.006e-2244.25Transcription factor bHLH64 OS=Arabidopsis thalian... [more]
BEE2_ARATH1.112e-2177.05Transcription factor BEE 2 OS=Arabidopsis thaliana... [more]
BH062_ARATH2.740e-2047.83Transcription factor bHLH62 OS=Arabidopsis thalian... [more]
BH049_ARATH1.776e-1982.14Transcription factor bHLH49 OS=Arabidopsis thalian... [more]
BH078_ARATH3.029e-1971.64Transcription factor bHLH78 OS=Arabidopsis thalian... [more]
BH074_ARATH3.956e-1976.27Transcription factor bHLH74 OS=Arabidopsis thalian... [more]
BH077_ARATH1.151e-1881.36Transcription factor bHLH77 OS=Arabidopsis thalian... [more]
BPE_ARATH1.503e-1874.19Transcription factor BPE OS=Arabidopsis thaliana G... [more]
BH076_ARATH3.349e-1881.48Transcription factor bHLH76 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA29CD02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29CD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918197 ID=FC918197; Name=FC918197; organism=Citrus clementina; type=EST; length=848bp
AGGGACGTTGCTGCCAGAGATGTTGCACTGTGCGGACATTACAGTACTTG
AGAGGCAACGTGCCCGCTTGAAATGGCAACAAGACCAGCTTCAGCAGCCG
CAGCAGCAGCAAGAGCTTCAACAACAACAACATCAAGAGCAGCAGCAGCA
GCAGCAGCAGGAAGTGCGTTACTTTAGTGAGTTGAGTCAGTTGATCAGCC
AGGGTTATGACGAGGGTGGCTTGATGATGGGGCAACAAGTGAAGCCCGAC
CCGGCTTTTGAAAACGGGTGGCCTGACTTGGGAAAGATTGTTGCCCCTGC
TGCCGGCTACGGATTTGGGCCTGGTTTTGAGGCCAGTTATGCCATTTCAA
GAACCTCTAGTTCCCCACCGGCGGTGGTGCCAGAGGCCGTGGATGTGAAG
GGGAAGGTGTCAGTGGCTGCTTTGAATGAGAAGGTGAGTGCTGCGGTTGG
AAGAGAAAGCTTCAAGAAGAGGAAAGCTGATAAGGTTCAAAACACAAAGG
TTGCTGTAGAAGAGAACACTAAAGACAAAAGGATGAAAGGATCAGCAGAA
GAGGGAGACTCATCAAAAATCACAGAGCAAAACAACAACAACAACAACAA
CAACAACAACAGAAGCAACAGCAATAATAATAATAATAAAAATAAAAATA
ATAAAGAAACTTCTGCTGATACTTCAAAGGCTTCTGAGGTTCAAAAGCCT
GATTACATCCATGTCCGGGCTCGCCGCGGCCAAGCTACTGATAGCCACAG
CTTAGCTGAAAGAGTGAGAAGGGAAAAAATCAGTGAAAGAATGAAGTATT
TGCAAGATTTAGTACCAGGATGCAACAAGATCACAGGGAAAGCTGGAA
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